Research graph
References from Protocol for cyclic DNA-damaging treatments to generate high mutational burden in the human A549 cell line. Local targets link to admitted publications; unresolved targets remain external evidence.
Five dominant amino acid substitution signatures shape tumour immunity
10.1038/s44320-026-00193-x · 2026 · External reference
A Compendium of Mutational Signatures of Environmental Agents
10.1016/j.cell.2019.03.001 · 2019 · External reference
The UCSC Genome Browser database: 2026 update
10.1093/nar/gkaf1250 · 2026 · External reference
The ENCODE Blacklist: Identification of Problematic Regions of the Genome
10.1038/s41598-019-45839-z · 2019 · External reference
A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies
10.1038/s43018-020-0027-5 · 2020 · External reference
The repertoire of mutational signatures in human cancer
10.1038/s41586-020-1943-3 · 2020 · External reference
Fast and accurate short read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp324 · 2009 · External reference
Sambamba: fast processing of NGS alignment formats
10.1093/bioinformatics/btv098 · 2015 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut
10.1186/s12859-017-1492-4 · 2017 · External reference
Unresolved reference
2021 · External reference
Orchestrating high-throughput genomic analysis with Bioconductor
10.1038/nmeth.3252 · 2015 · External reference
Software for computing and annotating genomic ranges
10.1371/journal.pcbi.1003118 · 2013 · External reference
rtracklayer: an R package for interfacing with genome browsers
10.1093/bioinformatics/btp328 · 2009 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
MutationalPatterns: the one stop shop for the analysis of mutational processes
10.1186/s12864-022-08357-3 · 2022 · External reference
Unresolved reference
External reference
Unresolved reference
2016 · External reference
Unresolved reference
External reference
Unresolved reference
External reference
A Compendium of Mutational Signatures of Environmental Agents
10.1016/j.cell.2019.03.001 · ExternalCitation · doi-reference
Orchestrating high-throughput genomic analysis with Bioconductor
10.1038/nmeth.3252 · ExternalCitation · doi-reference
The repertoire of mutational signatures in human cancer
10.1038/s41586-020-1943-3 · ExternalCitation · doi-reference
The ENCODE Blacklist: Identification of Problematic Regions of the Genome
10.1038/s41598-019-45839-z · ExternalCitation · doi-reference
A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies
10.1038/s43018-020-0027-5 · ExternalCitation · doi-reference
Five dominant amino acid substitution signatures shape tumour immunity
10.1038/s44320-026-00193-x · ExternalCitation · doi-reference
Fast and accurate short read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp324 · ExternalCitation · doi-reference
rtracklayer: an R package for interfacing with genome browsers
10.1093/bioinformatics/btp328 · ExternalCitation · doi-reference
Sambamba: fast processing of NGS alignment formats
10.1093/bioinformatics/btv098 · ExternalCitation · doi-reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · ExternalCitation · doi-reference
The UCSC Genome Browser database: 2026 update
10.1093/nar/gkaf1250 · ExternalCitation · doi-reference
Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut
10.1186/s12859-017-1492-4 · ExternalCitation · doi-reference
MutationalPatterns: the one stop shop for the analysis of mutational processes
10.1186/s12864-022-08357-3 · ExternalCitation · doi-reference
Software for computing and annotating genomic ranges
10.1371/journal.pcbi.1003118 · ExternalCitation · doi-reference
