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References from Protocol for correlating in vivo calcium imaging with spatial transcriptomics in the mouse brain. Local targets link to admitted publications; unresolved targets remain external evidence.
A Scalable Cross-Modal Workflow for Linking In Vivo Neural Activity to Neuronal Cell Types via Spatial Gene Profiling
2026 · External reference
The molecular cytoarchitecture of the adult mouse brain
10.1038/s41586-023-06818-7 · 2023 · External reference
Spatial atlas of the mouse central nervous system at molecular resolution
10.1038/s41586-023-06569-5 · 2023 · External reference
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
10.1038/s41586-023-06812-z · 2023 · External reference
Molecularly defined and spatially resolved cell atlas of the whole mouse brain
10.1038/s41586-023-06808-9 · 2023 · External reference
EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization
10.1016/j.cell.2021.11.024 · 2021 · External reference
Imaging in vivo: watching the brain in action
10.1038/nrn2338 · 2008 · External reference
Multimodal mapping of cell types and projections in the central nucleus of the amygdala
2023 · External reference
Visualizing cellular and tissue ultrastructure using Ten-fold Robust Expansion Microscopy (TREx)
2022 · External reference
Transcardiac Perfusion of the Mouse for Brain Tissue Dissection and Fixation
10.21769/bioprotoc.3988 · 2021 · External reference
Unresolved reference
2016 · External reference
Extracting large-scale neural activity with Suite2p
2026 · External reference
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust
10.1242/dev.165753 · 2018 · External reference
Genetic strategies to access activated neurons
10.1016/j.conb.2017.05.014 · 2017 · External reference
Multiple convergent hypothalamus-brainstem circuits drive defensive behavior
10.1038/s41593-020-0655-1 · 2020 · External reference
Transcriptomic neuron types vary topographically in function and morphology
10.1038/s41586-024-08518-2 · 2025 · External reference
Whole-Brain Co-Mapping of Gene Expression and Neuronal Activity at Cellular Resolution in Behaving Zebrafish
2026 · External reference
Multiplex Detection of Gene Expression in the Intact Drosophila Brain Using Expansion-Assisted Iterative Fluorescence In Situ Hybridization
10.3791/67656 · 2025 · External reference
