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References from Multi-omic analysis reveals maturation programs in human pluripotent stem cell-derived cardiomyocytes during long-term culture. Local targets link to admitted publications; unresolved targets remain external evidence.
Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease
10.1016/j.stem.2022.03.003 · 2022 · External reference
Metabolic maturation increases susceptibility to hypoxia-induced damage in human iPSC-derived cardiomyocytes
10.1093/stcltm/szac061 · 2022 · External reference
Modeling effects of immunosuppressive drugs on human hearts using induced pluripotent stem cell–derived cardiac organoids and single-cell RNA sequencing
10.1161/circulationaha.121.054317 · 2022 · External reference
Cross-site reliability of human induced pluripotent stem cell-derived cardiomyocyte based safety assays using microelectrode arrays: results from a blinded CiPA pilot study
10.1093/toxsci/kfy110 · 2018 · External reference
Allogeneic transplantation of iPS cell-derived cardiomyocytes regenerates primate hearts
10.1038/nature19815 · 2016 · External reference
Chemically defined generation of human cardiomyocytes
10.1038/nmeth.2999 · 2014 · External reference
Directed cardiomyocyte differentiation from human pluripotent stem cells by modulating Wnt/β-catenin signaling under fully defined conditions
10.1038/nprot.2012.150 · 2013 · External reference
Functional cardiomyocytes derived from human induced pluripotent stem cells
10.1161/circresaha.108.192237 · 2009 · External reference
Multifactorial approaches to enhance maturation of human iPSC-derived cardiomyocytes
10.1016/j.molliq.2023.122668 · 2023 · External reference
hiPSC-CM monolayer maturation state determines drug responsiveness in high throughput pro-arrhythmia screen
10.1038/s41598-017-13590-y · 2017 · External reference
Cellular heterogeneity of pluripotent stem cell-derived cardiomyocyte grafts is mechanistically linked to treatable arrhythmias
10.1038/s44161-023-00419-3 · 2024 · External reference
In vitro matured human pluripotent stem cell–derived cardiomyocytes form grafts with enhanced structure and function in injured hearts
10.1161/circulationaha.121.053563 · 2022 · External reference
Cardiomyocyte maturation: advances in knowledge and implications for regenerative medicine
10.1038/s41569-019-0331-x · 2020 · External reference
Naturally engineered maturation of cardiomyocytes
10.3389/fcell.2017.00050 · 2017 · External reference
Ultrastructural maturation of human-induced pluripotent stem cell-derived cardiomyocytes in a long-term culture
10.1253/circj.cj-12-0987 · 2013 · External reference
Human plasma-like medium enhances structural and metabolic maturation of human pluripotent stem cell-derived cardiomyocytes
2026 · External reference
Acquisition of a quantitative, stoichiometrically conserved ratiometric marker of maturation status in stem cell-derived cardiac myocytes
10.1016/j.stemcr.2014.07.012 · 2014 · External reference
Electrophysiological and calcium-handling development during long-term culture of human-induced pluripotent stem cell-derived cardiomyocytes
10.1007/s00395-022-00973-0 · 2023 · External reference
Fatty acids enhance the maturation of cardiomyocytes derived from human pluripotent stem cells
10.1016/j.stemcr.2019.08.013 · 2019 · External reference
Changes in creatine transporter function during cardiac maturation in the rat
10.1186/1471-213x-10-70 · 2010 · External reference
Rod-shaped micropatterning enhances the electrophysiological maturation of cardiomyocytes derived from human induced pluripotent stem cells
10.1016/j.stemcr.2024.08.005 · 2024 · External reference
Comprehensive promotion of iPSC-CM maturation by integrating metabolic medium with nanopatterning and electrostimulation
10.1038/s41467-025-58044-6 · 2025 · External reference
Mechanical stress conditioning and electrical stimulation promote contractility and force maturation of induced pluripotent stem cell-derived human cardiac tissue
10.1161/circulationaha.114.014998 · 2016 · External reference
Afterload promotes maturation of human induced pluripotent stem cell derived cardiomyocytes in engineered heart tissues
10.1016/j.yjmcc.2018.03.016 · 2018 · External reference
A tissue-engineered scale model of the heart ventricle
10.1038/s41551-018-0271-5 · 2018 · External reference
Advanced maturation of human cardiac tissue grown from pluripotent stem cells
10.1038/s41586-018-0016-3 · 2018 · External reference
Advanced physiological maturation of human iPSC-derived cardiomyocytes using an algorithm-directed optimization of defined media components
10.1038/s41467-026-70550-9 · 2026 · External reference
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
10.1038/s41598-021-94732-1 · 2021 · External reference
Mature human induced pluripotent stem cell-derived cardiomyocytes promote angiogenesis through alpha-B crystallin
10.1186/s13287-023-03468-4 · 2023 · External reference
Structural and functional maturation of cardiomyocytes derived from human pluripotent stem cells
10.1089/scd.2012.0490 · 2013 · External reference
The impact of in vitro cell culture duration on the maturation of human cardiomyocytes derived from induced pluripotent stem cells of myogenic origin
10.1177/0963689718779346 · 2018 · External reference
Longitudinal metabolic profiling of cardiomyocytes derived from human-induced pluripotent stem cells
10.1007/s00395-020-0796-0 · 2020 · External reference
Mitochondrial maturation in human pluripotent stem cell derived cardiomyocytes
10.1155/2017/5153625 · 2017 · External reference
Human pluripotent stem cell-derived cardiomyocytes: genome-wide expression profiling of long-term in vitro maturation in comparison to human heart tissue
10.1016/j.gdata.2015.03.008 · 2015 · External reference
Label-free method to monitor metabolism during long-term culture of human pluripotent stem cell derived cardiomyocytes
2025 · External reference
Metabolomics identifies metabolic markers of maturation in human pluripotent stem cell-derived cardiomyocytes
10.7150/thno.19390 · 2017 · External reference
Proteasome-dependent regulation of distinct metabolic states during long-term culture of human iPSC-derived cardiomyocytes
10.1161/circresaha.118.313973 · 2019 · External reference
An unbiased proteomics method to assess the maturation of human pluripotent stem cell–derived cardiomyocytes
10.1161/circresaha.119.315305 · 2019 · External reference
Time-regulated transcripts with the potential to modulate human pluripotent stem cell-derived cardiomyocyte differentiation
10.1186/s13287-022-03138-x · 2022 · External reference
Proteomic analysis reveals temporal changes in protein expression in human induced pluripotent stem cell-derived cardiomyocytes in vitro
10.1089/scd.2018.0210 · 2019 · External reference
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
10.1038/s41598-021-94732-1 · 2021 · External reference
Multiomics method enabled by sequential metabolomics and proteomics for human pluripotent stem-cell-derived cardiomyocytes
10.1021/acs.jproteome.1c00611 · 2021 · External reference
Deep phenotyping of human induced pluripotent stem cell–derived atrial and ventricular cardiomyocytes
10.1172/jci.insight.99941 · 2018 · External reference
Monitoring the maturation of the sarcomere network: a super-resolution microscopy-based approach
10.1007/s00018-022-04196-3 · 2022 · External reference
Robust cardiomyocyte differentiation from human pluripotent stem cells via temporal modulation of canonical Wnt signaling
10.1073/pnas.1200250109 · 2012 · External reference
Determining cell type abundance and expression from bulk tissues with digital cytometry
10.1038/s41587-019-0114-2 · 2019 · External reference
Software tool for automatic quantification of sarcomere length and organization in fixed and live 2D and 3D muscle cell cultures in vitro
10.1002/cpz1.462 · 2022 · External reference
limma powers differential expression analyses for RNA-sequencing and microarray studies
10.1093/nar/gkv007 · 2015 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation
10.1093/nar/gkae253 · 2024 · External reference
MetaboAnalystR 4.0: a unified LC-MS workflow for global metabolomics
10.1038/s41467-024-48009-6 · 2024 · External reference
HMDB 4.0: the human metabolome database for 2018
10.1093/nar/gkx1089 · 2018 · External reference
Phosphatidylglycerol incorporates into cardiolipin to improve mitochondrial activity and inhibits inflammation
10.1038/s41598-018-23190-z · 2018 · External reference
Short- and long-term roles of phosphatidylinositol 4,5-bisphosphate PIP2 on Cav3.1- and Cav3.2-T-type calcium channel current
10.1016/j.pathophys.2018.12.001 · 2019 · External reference
Phosphatidylinositol-bisphosphate regulates intercellular coupling in cardiac myocytes
10.1007/s00424-008-0538-x · 2008 · External reference
Protective action of l-carnitine on cardiac mitochondrial function and structure against fatty acid stress
10.1016/j.bbrc.2011.07.039 · 2011 · External reference
Glucose inhibits cardiac muscle maturation through nucleotide biosynthesis
10.7554/elife.29330 · 2017 · External reference
Distinct carbon sources affect structural and functional maturation of cardiomyocytes derived from human pluripotent stem cells
10.1038/s41598-017-08713-4 · 2017 · External reference
Metabolic reprogramming enhances oxidative stress resistance in differentiating cardiomyocytes
10.1038/s41598-026-35263-5 · 2026 · External reference
clusterProfiler 4.0: a universal enrichment tool for interpreting omics data, the
2021 · External reference
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
10.1093/nar/gkad841 · 2023 · External reference
A critical role for estrogen-related receptor signaling in cardiac maturation
10.1161/circresaha.119.316100 · 2020 · External reference
ERRγ enhances cardiac maturation with T-tubule formation in human iPSC-derived cardiomyocytes
10.1038/s41467-021-23816-3 · 2021 · External reference
Sequential notch activation regulates ventricular chamber development
10.1038/ncb3280 · 2016 · External reference
A Mesp1-dependent developmental breakpoint in transcriptional and epigenomic specification of early cardiac precursors
10.1242/dev.201229 · 2023 · External reference
Maturation of human induced pluripotent stem cell-derived cardiomyocytes promoted by Brachyury priming
10.1038/s41598-025-97676-y · 2025 · External reference
EBF2 determines and maintains brown adipocyte identity
10.1016/j.cmet.2013.01.015 · 2013 · External reference
Transcriptional control of preadipocyte determination by Zfp423
10.1038/nature08816 · 2010 · External reference
Dual inhibition of MAPK and PI3K/AKT pathways enhances maturation of human iPSC-derived cardiomyocytes
10.1016/j.stemcr.2022.07.003 · 2022 · External reference
Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory
10.1038/s41467-019-09483-5 · 2019 · External reference
Regulation of postnatal cardiomyocyte maturation by an RNA splicing regulator RBFox1
10.1161/circulationaha.122.061602 · 2023 · External reference
Inhibition of TGF-β/Smad3 signaling disrupts cardiomyocyte cell cycle progression and epithelial–mesenchymal transition-like response during ventricle regeneration
2021 · External reference
FOXA1/2 depletion drives global reprogramming of differentiation state and metabolism in a human liver cell line and inhibits differentiation of human stem cell-derived hepatic progenitor cells
10.1096/fj.202101506rrr · 2023 · External reference
HNF4A and HNF1A exhibit tissue specific target gene regulation in pancreatic beta cells and hepatocytes
10.1038/s41467-024-48647-w · 2024 · External reference
Expression and regulation of C/EBPα in normal myelopoiesis and in malignant transformation
10.1182/blood-2016-09-687822 · 2017 · External reference
PRDM14: a unique regulator for pluripotency and epigenetic reprogramming
10.1016/j.tibs.2014.04.003 · 2014 · External reference
Cardiomyocyte expression of PPARγ leads to cardiac dysfunction in mice
10.1172/jci30335 · 2007 · External reference
Trajectory reconstruction identifies dysregulation of perinatal maturation programs in pluripotent stem cell-derived cardiomyocytes
10.1016/j.celrep.2023.112330 · 2023 · External reference
AP-1 activation mediates post-natal cardiomyocyte maturation
2022 · External reference
Postnatal state transition of cardiomyocyte as a primary step in heart maturation
10.1007/s13238-022-00908-4 · 2022 · External reference
In vivo CRISPR/Cas9-mediated screen reveals a critical function of TFDP1 and E2F4 transcription factors in hematopoiesis
10.1038/s41375-024-02357-w · 2024 · External reference
Gene expression across mammalian organ development
10.1038/s41586-019-1338-5 · 2019 · External reference
Platform-Agnostic CellNet (PACNet) enables cross-study meta-analysis of cell fate engineering protocols
10.1101/2022.09.07.506886 · 2022 · External reference
Determination of the human cardiomyocyte mRNA and miRNA differentiation network by fine-scale profiling
10.1089/scd.2011.0357 · 2012 · External reference
Physiological calcium combined with electrical pacing accelerates maturation of human engineered heart tissue
10.1016/j.stemcr.2022.07.006 · 2022 · External reference
Metabolic maturation media improve physiological function of human iPSC-derived cardiomyocytes
10.1016/j.celrep.2020.107925 · 2020 · External reference
MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
10.1186/s13059-020-02015-1 · 2020 · External reference
Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
10.1038/s41592-021-01343-9 · 2022 · External reference
Myc requires distinct E2F activities to induce S phase and apoptosis
10.1016/s1097-2765(01)00275-1 · 2001 · External reference
Functional screening in human cardiac organoids reveals a metabolic mechanism for cardiomyocyte cell cycle arrest
10.1073/pnas.1707316114 · 2017 · External reference
Wnt activation and reduced cell-cell contact synergistically induce massive expansion of functional human iPSC-derived cardiomyocytes
10.1016/j.stem.2020.06.001 · 2020 · External reference
Temporal control of the WNT signaling pathway during cardiac differentiation impacts upon the maturation state of human pluripotent stem cell derived cardiomyocytes
10.3389/fmolb.2022.714008 · 2022 · External reference
A conserved HH-Gli1-Mycn network regulates heart regeneration from newt to human
10.1038/s41467-018-06617-z · 2018 · External reference
The HH-GLI2-CKS1B network regulates the proliferation-to-maturation transition of cardiomyocytes
10.1093/stcltm/szae032 · 2024 · External reference
Genome-wide transcriptomics analysis identifies sox7 and sox18 as specifically regulated by gata4 in cardiomyogenesis
10.1016/j.ydbio.2017.11.017 · 2018 · External reference
SOX7 and SOX18 are essential for cardiogenesis in Xenopus
10.1002/dvdy.20565 · 2005 · External reference
HAND factors regulate cardiac lineage commitment and differentiation from human pluripotent stem cells
10.1186/s13287-024-03649-9 · 2024 · External reference
Tbx5 maintains atrial identity in post-natal cardiomyocytes by regulating an atrial-specific enhancer network
10.1038/s44161-023-00334-7 · 2023 · External reference
The role of Tbx20 in cardiovascular development and function
2021 · External reference
Tbx20 regulates a genetic program essential to adult mouse cardiomyocyte function
10.1172/jci59472 · 2011 · External reference
Conserved roles of GATA4 and its target gene TBX2 in regulation of human cardiogenesis
10.1242/bio.062553 · 2026 · External reference
FOG-2, a cofactor for GATA transcription factors, is essential for heart morphogenesis and development of coronary vessels from epicardium
10.1016/s0092-8674(00)80885-5 · 2000 · External reference
Fog2 is critical for cardiac function and maintenance of coronary vasculature in the adult mouse heart
10.1172/jci38723 · 2009 · External reference
Meox2/Tcf15 heterodimers program the heart capillary endothelium for cardiac fatty acid uptake
10.1161/circulationaha.114.013721 · 2015 · External reference
MYCL promotes the progression of triple-negative breast cancer by activating the JAK/STAT3 pathway
10.3892/or.2022.8418 · 2022 · External reference
Disturbed calcium handling in the heart of the collagen VI knockout rat
10.1016/j.bpj.2023.11.2784 · 2024 · External reference
Differential expression of immunomodulatory galectin-1 in peripheral leukocytes and adult tissues and its cytosolic organization in striated muscle
10.1093/glycob/cwp203 · 2010 · External reference
The role of Sfrp and DKK proteins in cardiomyocyte development
2021 · External reference
Fibroblast growth factor 12 attenuated cardiac remodeling via suppressing oxidative stress
10.1016/j.peptides.2022.170786 · 2022 · External reference
Lipoprotein lipase is produced by cardiac myocytes rather than interstitial cells in human myocardium
10.1161/01.atv.14.9.1445 · 1994 · External reference
Small heat shock protein 20 (HspB6) in cardiac hypertrophy and failure
10.1016/j.yjmcc.2010.09.013 · 2011 · External reference
Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes
10.1073/pnas.1424042112 · 2015 · External reference
CPNE5 overexpression inhibits cardiomyocytes apoptosis by promoting the degradation of FAS receptor
10.1016/j.isci.2025.113302 · 2025 · External reference
multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data
10.1186/s12859-020-03910-x · 2020 · External reference
Integrin stimulation by collagen I at the progenitor stage accelerates maturation of human iPSC-derived cardiomyocytes
10.1016/j.yjmcc.2025.02.009 · 2025 · External reference
Slit–Robo signalling in heart development
10.1093/cvr/cvy061 · 2018 · External reference
RNA splicing controls organ-wide maturation of postnatal heart in mice
10.1016/j.devcel.2024.09.018 · 2025 · External reference
Cardiomyocyte maturation
10.1161/circresaha.119.315862 · 2020 · External reference
The developmental transcriptome of the human heart
10.1038/s41598-018-33837-6 · 2018 · External reference
The differences in the developmental stages of the cardiomyocytes and endothelial cells in human and mouse embryos at the single-cell level
2024 · External reference
Comparative gene expression analysis of mouse and human cardiac maturation
10.1016/j.gpb.2016.04.004 · 2016 · External reference
Adult human heart extracellular matrix improves human iPSC-CM function via mitochondrial and metabolic maturation
10.1093/stmcls/sxaf005 · 2025 · External reference
Cardiac fibroblasts regulate myocardial proliferation through β1 integrin signaling
10.1016/j.devcel.2008.12.007 · 2009 · External reference
Human induced pluripotent stem cell-derived cardiac progenitor cells in phenotypic screening: a transforming growth factor- β type 1 receptor kinase inhibitor induces efficient cardiac differentiation
10.5966/sctm.2015-0114 · 2016 · External reference
Novel method of differentiating human induced pluripotent stem cells to mature cardiomyocytes via Sfrp2
10.1038/s41598-023-31144-3 · 2023 · External reference
Sonic Hedgehog signaling regulates the optimal differentiation pace from early-stage mesoderm to cardiogenic mesoderm in mice
10.1111/dgd.12955 · 2025 · External reference
Hedgehog signaling activates a mammalian heterochronic gene regulatory network controlling differentiation timing across lineages
10.1016/j.devcel.2022.08.009 · 2022 · External reference
Bulk cell density and Wnt/TGFbeta signalling regulate mesendodermal patterning of human pluripotent stem cells
10.1038/ncomms13602 · 2016 · External reference
Enhanced cardiomyogenesis of human embryonic stem cells by a small molecular inhibitor of p38 MAPK
10.1111/j.1432-0436.2007.00236.x · 2008 · External reference
Small molecule-mediated TGF-β type II receptor degradation promotes cardiomyogenesis in embryonic stem cells
10.1016/j.stem.2012.04.025 · 2012 · External reference
Targeting HIF-1α in combination with PPARα activation and postnatal factors promotes the metabolic maturation of human induced pluripotent stem cell-derived cardiomyocytes
10.1016/j.yjmcc.2019.05.003 · 2019 · External reference
PGC1/PPAR drive cardiomyocyte maturation at single cell level via YAP1 and SF3B2
10.1038/s41467-021-21957-z · 2021 · External reference
PPARdelta activation induces metabolic and contractile maturation of human pluripotent stem cell-derived cardiomyocytes
10.1016/j.stem.2022.02.011 · 2022 · External reference
PER2 controls lipid metabolism by direct regulation of PPARγ
10.1016/j.cmet.2010.10.005 · 2010 · External reference
BMAL1 regulates mitochondrial fission and mitophagy through mitochondrial protein BNIP3 and is critical in the development of dilated cardiomyopathy
10.1007/s13238-020-00713-x · 2020 · External reference
The nuclear receptor ERR cooperates with the cardiogenic factor GATA4 to orchestrate cardiomyocyte maturation
10.1038/s41467-022-29733-3 · 2022 · External reference
Epigenetic priming of human pluripotent stem cell-derived cardiac progenitor cells accelerates cardiomyocyte maturation
10.1002/stem.3021 · 2019 · External reference
Signal transducer and transcriptional activation 1 protects against pressure overload-induced cardiac hypertrophy
10.1096/fj.202000325rrr · 2021 · External reference
Protections of transcription factor BACH2 and natural product myricetin against pathological cardiac hypertrophy and dysfunction
10.3389/fphys.2022.971424 · 2022 · External reference
TGF-β mediates early angiogenesis and latent fibrosis in an Emilin1-deficient mouse model of aortic valve disease
10.1242/dmm.015255 · 2014 · External reference
Lipoprotein lipase (LpL) on the surface of cardiomyocytes increases lipid uptake and produces a cardiomyopathy
10.1172/jci16751 · 2003 · External reference
Sfrp5 identifies murine cardiac progenitors for all myocardial structures except for the right ventricle
10.1038/ncomms14664 · 2017 · External reference
Advanced physiological maturation of human iPSC-derived cardiomyocytes using an algorithm-directed optimization of defined media components
10.1038/s41467-026-70550-9 · 2026 · External reference
AMPK activator-treated human cardiac spheres enhance maturation and enable pathological modeling
10.1186/s13287-023-03554-7 · 2023 · External reference
Cardiac differentiation roadmap for analysis of plasticity and balanced lineage commitment
10.1016/j.stemcr.2025.102422 · 2025 · External reference
Single-cell multi-modal integrative analyses highlight functional dynamic gene regulatory networks directing human cardiac development
10.1016/j.xgen.2024.100680 · 2024 · External reference
Single-cell RNA sequencing reveals maturation trajectory in human pluripotent stem cell-derived cardiomyocytes in engineered tissues
10.1016/j.isci.2023.106302 · 2023 · External reference
Single-cell RNA-sequencing and optical electrophysiology of human induced pluripotent stem cell-derived cardiomyocytes reveal discordance between cardiac subtype-associated gene expression patterns and electrophysiological phenotypes
10.1089/scd.2019.0030 · 2019 · External reference
Single-cell transcriptomic analysis of cardiac differentiation from human PSCs reveals HOPX-dependent cardiomyocyte maturation
10.1016/j.stem.2018.09.009 · 2018 · External reference
Physiological calcium combined with electrical pacing accelerates maturation of human engineered heart tissue
10.1016/j.stemcr.2022.07.006 · 2022 · External reference
Enhancing human pluripotent stem cell differentiation to cardiomyocytes through cardiac progenitor reseeding and cryopreservation
10.1016/j.isci.2025.112452 · 2025 · External reference
Ultrahigh-resolution mass spectrometry-based platform for plasma metabolomics applied to type 2 diabetes research
10.1021/acs.jproteome.0c00510 · 2021 · External reference
Accounting for the multiple natures of missing values in label-free quantitative proteomics data sets to compare imputation strategies
10.1021/acs.jproteome.5b00981 · 2016 · External reference
Centering, scaling, and transformations: improving the biological information content of metabolomics data
10.1186/1471-2164-7-142 · 2006 · External reference
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
10.1038/nprot.2011.335 · 2011 · External reference
A photocleavable surfactant for top-down proteomics
10.1038/s41592-019-0391-1 · 2019 · External reference
Online parallel accumulation-serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer
10.1074/mcp.tir118.000900 · 2018 · External reference
MaxQuant software for ion mobility enhanced shotgun proteomics
10.1074/mcp.tir119.001720 · 2020 · External reference
DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics
10.1093/bioinformatics/btw580 · 2017 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2014 · External reference
Recount3: summaries and queries for large-scale RNA-seq expression and splicing
10.1186/s13059-021-02533-6 · 2021 · External reference
The Molecular Signatures Database (MSigDB) hallmark gene set collection
10.1016/j.cels.2015.12.004 · 2015 · External reference
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
10.1093/nar/30.1.207 · 2002 · External reference
PRIDE: the proteomics identifications database
10.1002/pmic.200401303 · 2005 · External reference