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References from DLMDA pre-amplification preserves genome-wide copy-number profiles in FFPE samples despite reduced detection sensitivity. Local targets link to admitted publications; unresolved targets remain external evidence.
Whole genome sequencing in clinical practice
10.1186/s12920-024-01795-w · 2024 · External reference
DNA copy number variation: Main characteristics, evolutionary significance, and pathological aspects
10.1016/j.bj.2021.02.003 · 2021 · External reference
Single nucleotide polymorphisms and cancer susceptibility
10.18632/oncotarget.22372 · 2017 · External reference
Are whole-exome and whole-genome sequencing approaches cost-effective? A systematic review of the literature
2018 · External reference
The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge
2015 · External reference
The Cancer Genome Atlas Pan-Cancer analysis project
10.1038/ng.2764 · 2013 · External reference
A critical spotlight on the paradigms of FFPE-DNA sequencing
10.1093/nar/gkad519 · 2023 · External reference
Sequence artifacts in DNA from formalin-fixed tissues: causes and strategies for minimization
10.1373/clinchem.2014.223040 · 2015 · External reference
Recent advances and application of whole genome amplification in molecular diagnosis and medicine
10.1002/mco2.116 · 2022 · External reference
Whole Genome Amplification in Preimplantation Genetic Testing in the Era of Massively Parallel Sequencing
10.3390/ijms23094819 · 2022 · External reference
Comprehensive human genome amplification using multiple displacement amplification
10.1073/pnas.082089499 · 2002 · External reference
Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel
10.1101/gr.1949704 · 2004 · External reference
Impact of whole genome amplification on analysis of copy number variants
10.1093/nar/gkn378 · 2008 · External reference
Whole genome amplification for array comparative genomic hybridization using DNA extracted from formalin-fixed, paraffin-embedded histological sections
10.2353/jmoldx.2009.080143 · 2009 · External reference
Histopathological factors affecting the extraction of high quality genomic DNA from tissue sections for next-generation sequencing
2019 · External reference
Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics
10.18632/oncotarget.4671 · 2015 · External reference
Fast and accurate short read alignment with Burrows-Wheeler transform
10.1093/bioinformatics/btp324 · 2009 · External reference
The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
Unresolved reference
External reference
Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer
10.1101/gr.137570.112 · 2012 · External reference
Unresolved reference
External reference
10.1002/0471142727.mb1513s105
10.1002/0471142727.mb1513s105 · External reference
Enhanced sequencing coverage with digital droplet multiple displacement amplification
10.1093/nar/gkv1493 · 2016 · External reference
Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis
10.1186/s40168-016-0197-7 · 2016 · External reference
A selected pre-amplification strategy for genetic analysis using limited DNA targets
10.1515/cclm.2009.067 · 2009 · External reference
Systematic comparison of two whole-genome amplification methods for targeted next-generation sequencing using frozen and FFPE normal and cancer tissues
10.1038/s41598-017-04419-9 · 2017 · External reference
A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods
10.1371/journal.pone.0105585 · 2014 · External reference
Mechanism of chimera formation during the Multiple Displacement Amplification reaction
10.1186/1472-6750-7-19 · 2007 · External reference
Unresolved reference
2008 · External reference
Whole-genome multiple displacement amplification from single cells
10.1038/nprot.2006.326 · 2006 · External reference
Whole genome amplification and real-time PCR in forensic casework
10.1186/1471-2164-10-159 · 2009 · External reference
Impact of whole-genome amplification on the reliability of pre-transfer cattle embryo breeding value estimates
10.1186/1471-2164-15-889 · 2014 · External reference
The Performance of Whole Genome Amplification Methods and Next-Generation Sequencing for Pre-Implantation Genetic Diagnosis of Chromosomal Abnormalities
10.1016/j.jgg.2015.03.001 · 2015 · External reference
Novel Double Factor PGT strategy analyzing blastocyst stage embryos in a single NGS procedure
10.1371/journal.pone.0205692 · 2018 · External reference
Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues
10.1186/1471-2164-7-312 · 2006 · External reference
DNA amplification method tolerant to sample degradation
10.1101/gr.2813404 · 2004 · External reference
Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue
10.1186/s13073-016-0375-z · 2016 · External reference
Shallow whole genome sequencing for robust copy number profiling of formalin-fixed paraffin-embedded breast cancers
10.1016/j.yexmp.2018.03.006 · 2018 · External reference
