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References from From Single Injection to Dual Insights: Integrating EAD and CID Acquisition for Spectral Library Generation and EAD–CID Spectral Matching. Local targets link to admitted publications; unresolved targets remain external evidence.
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Charting the Undiscovered Metabolome with Synthetic Multiplexing, Ver. 1
10.1101/2025.11.18.689170 · 2025 · External reference
Discovery of Metabolites Prevails amid In-Source Fragmentation
10.1038/s42255-025-01239-4 · 2025 · External reference
Ion/Neutral, Ion/Electron, Ion/Photon, and Ion/Ion Interactions in Tandem Mass Spectrometry: Do We Need Them All? Are They Enough?
10.1007/s13361-010-0004-9 · 2011 · External reference
Deep-Lipidotyping by Mass Spectrometry: Recent Technical Advances and Applications
10.1016/j.jlr.2022.100219 · 2022 · External reference
Dissociation of Biomolecules by an Intense Low-Energy Electron Beam in a High Sensitivity Time-of-Flight Mass Spectrometer
10.1021/jasms.0c00425 · 2021 · External reference
Electron Impact Excitation of Ions from Organics on Singly Protonated Peptides with and without Post-Translational Modifications
10.1021/jasms.2c00146 · 2022 · External reference
Qualitative flexibility combined with quantitative power
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Differentiation of Steroid Isomers via Derivatization and Electron-Activated Dissociation Tandem Mass Spectrometry
10.1007/s00216-025-06258-4 · 2026 · External reference
Quantitative and qualitative analysis of steroids by high-resolution mass spectrometry. Sensitive quantification and structural elucidation of steroids using the ZenoTOF 7600 system
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Improved Metabolite Characterization by Liquid Chromatography - Tandem Mass Spectrometry through Electron Impact Type Fragments from Adduct Ions
10.1016/j.aca.2021.338207 · 2021 · External reference
General Screening and Multiple Dissociation Methods for Complementary LC-MS Analysis of Pesticides in Beverages: Potential and Pitfalls
10.1021/acs.analchem.5c01831 · 2025 · External reference
Near-Complete Structural Characterization of Phosphatidylcholines Using Electron Impact Excitation of Ions from Organics
10.1021/acs.analchem.5b01460 · 2015 · External reference
In-Depth Sphingomyelin Characterization Using Electron Impact Excitation of Ions from Organics and Mass Spectrometry
10.1194/jlr.m067199 · 2016 · External reference
Structural Identification of Triacylglycerol Isomers Using Electron Impact Excitation of Ions from Organics (EIEIO)
10.1194/jlr.m070177 · 2016 · External reference
Quantitative Structural Multiclass Lipidomics Using Differential Mobility: Electron Impact Excitation of Ions from Organics (EIEIO) Mass Spectrometry
10.1194/jlr.d083261 · 2018 · External reference
MS-DIAL 5 Multimodal Mass Spectrometry Data Mining Unveils Lipidome Complexities
10.1038/s41467-024-54137-w · 2024 · External reference
Structural Annotation of Acylcarnitines Detected in SRM 1950 Using Collision-Induced Dissociation and Electron-Induced Dissociation
10.1007/s00216-025-06234-y · 2026 · External reference
Confident Structural Annotation of Bile Acid Isomers Combining Electron-Activated Dissociation or Ion Mobility with High-Resolution Mass Spectrometry in Metabolomics
10.1021/acsomega.5c12361 · 2026 · External reference
Development of a Branched Radio-Frequency Ion Trap for Electron Based Dissociation and Related Applications
10.5702/massspectrometry.a0058 · 2017 · External reference
A Novel Ion Trap That Enables High Duty Cycle and Wide m/z Range on an Orthogonal Injection TOF Mass Spectrometer
10.1016/j.jasms.2009.03.018 · 2009 · External reference
A W-Geometry Ortho-TOF MS with High Resolution and Up to 100% Duty Cycle for MS/MS
10.1007/s13361-017-1742-8 · 2017 · External reference
Resolving Lipid Isomers up to the Double Bond Position Level Using Reversed-Phase Chromatography, EAD Fragmentation, and High-Resolution Mass Spectrometry: Application to Pancreatic Cancer
10.1016/j.aca.2026.345225 · 2026 · External reference
Single-Cell Lipidomics: Performance Evaluation across Four Liquid Chromatography Mass Spectrometry (LC-MS) Systems
10.1039/d5an00851d · 2025 · External reference
Optimisation of Electron-Induced Dissociation Parameters for Molecular Annotation of Glycerides and Phospholipids in Fast LC-MS
10.1039/d5an00567a · 2025 · External reference
MultiMS2: A curated multi-modal, multi-energy spectral library for metabolomics
10.1093/gigascience/giag069 · 2026 · External reference
MultiMS2 spectral library - MGF and processing workflow
10.5281/zenodo.17417089 · External reference
CIeaD: A Complementary CID and EAD Mass Spectral Library for Phytochemicals
10.1021/jasms.5c00329 · 2026 · External reference
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Sharing and Community Curation of Mass Spectrometry Data with Global Natural Products Social Molecular Networking
10.1038/nbt.3597 · 2016 · External reference
GNPS Dashboard: Collaborative Exploration of Mass Spectrometry Data in the Web Browser
10.1038/s41592-021-01339-5 · 2022 · External reference
PubChem 2025 Update
10.1093/nar/gkae1059 · 2025 · External reference
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ChEBI in 2016: Improved Services and an Expanding Collection of Metabolites
10.1093/nar/gkv1031 · 2016 · External reference
A Cross-Platform Toolkit for Mass Spectrometry and Proteomics
10.1038/nbt.2377 · 2012 · External reference
CentroidR: Repository to Centroid Profile Spectra
10.5281/zenodo.17250307 · 2025 · External reference
Integrative Analysis of Multimodal Mass Spectrometry Data in MZmine 3
10.1038/s41587-023-01690-2 · 2023 · External reference
MSnLib: Efficient Generation of Open Multi-Stage Fragmentation Mass Spectral Libraries
10.1038/s41592-025-02813-0 · 2025 · External reference
Matchms - Processing and Similarity Evaluation of Mass Spectrometry Data
10.21105/joss.02411 · 2020 · External reference
Reproducible MS/MS Library Cleaning Pipeline in Matchms
10.1186/s13321-024-00878-1 · 2024 · External reference
Mass Spectrometry Searches Using MASST
10.1038/s41587-019-0375-9 · 2020 · External reference
Fast Mass Spectrometry Search and Clustering of Untargeted Metabolomics Data
10.1038/s41587-023-01985-4 · 2024 · External reference
Protocol for Community-Created Public MS/MS Reference Spectra within the Global Natural Products Social Molecular Networking Infrastructure
10.1002/rcm.8725 · 2020 · External reference
Untargeted data-dependent acquisition (DDA) metabolomics analysis using the ZenoTOF 7600 system. Source, compound and experimental parameters to perform DDA experiments using collision-induced dissociation
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Identification of Small Molecules Using Accurate Mass MS/MS Search
10.1002/mas.21535 · 2018 · External reference
Electron-Ion Reaction-Based Dissociation: A Powerful Ion Activation Method for the Elucidation of Natural Product Structures
10.1002/mas.21563 · 2018 · External reference
From a Single Steroid to the Steroidome: Trends and Analytical Challenges
10.1016/j.jsbmb.2020.105797 · 2021 · External reference
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Clinical Perspectives in Congenital Adrenal Hyperplasia Due to 11β-Hydroxylase Deficiency
10.1007/s12020-016-1189-x · 2017 · External reference
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Identifying Small Molecules via High Resolution Mass Spectrometry: Communicating Confidence
10.1021/es5002105 · 2014 · External reference
MS/MS Mass Spectrometry Filtering Tree for Bile Acid Regio- and Stereoisomer Annotation
10.1021/acs.analchem.5c05677 · 2026 · External reference
Integrative Data Science in Mass Spectrometry: Connecting Molecular Structures with Diverse Mass Spectrometry Fragmentation Behaviours
10.26434/chemrxiv-2025-3hf5c · 2026 · External reference
CID-EAD-UVPD MS/MS Spectra of Pesticides
10.26037/yareta:idzwd42n4feaddt7fydqefavve · External reference
Enabling Pan-Repository Reanalysis for Big Data Science of Public Metabolomics Data
10.1038/s41467-025-60067-y · 2025 · External reference
The Underappreciated Diversity of Bile Acid Modifications
10.1016/j.cell.2024.02.019 · 2024 · External reference
The Microbiome Diversifies Long- to Short-Chain Fatty Acid-Derived N-Acyl Lipids
10.1016/j.cell.2025.05.015 · 2025 · External reference
Longitudinal Fragment Profiles Based on Multi-Collision Energy Tandem Mass Spectra Improve the Accuracy of Metabolite Identification in Untargeted Metabolomics
10.1021/acs.analchem.5c01414 · 2025 · External reference
Landscape of Steroid Dynamics in Pregnancy: Insights From the Maternal-Placental-Fetal Unit and Placental Models
10.1016/j.mcpro.2025.100976 · 2025 · External reference
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Pregnenolone Production in Pregnancy
10.1016/0002-9378(71)90466-2 · 1971 · External reference
Taxonomically Informed Scoring Enhances Confidence in Natural Products Annotation
10.3389/fpls.2019.01329 · 2019 · External reference
Steroid 11β-Ol Dehydrogenase in Human Placenta
10.1038/187777a0 · 1960 · External reference
Interconversion of Cortisol and Cortisone by 11β-Hydroxysteroid Dehydrogenases Type 1 and 2 in the Perfused Human Placenta
10.1053/plac.1998.0352 · 1999 · External reference
Sexual Dimorphism in Lipidomic Changes in Maternal Blood and Placenta Associated with Obesity and Gestational Diabetes: A Discovery Study
10.1016/j.placenta.2024.12.002 · 2025 · External reference
Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics
10.1021/acs.jproteome.9b00640 · 2020 · External reference
Bottom-Up Structural Analysis for Natural Products by Identifying Fragment Ions Resulted from Gas Phase Collision-Induced C-C Bond Fission
10.1021/acs.analchem.5c01211 · 2025 · External reference
Structure-Centric Searching Enables Global Mapping of the Public Metabolome
10.1038/s41587-026-03082-8 · 2026 · External reference
