Research graph
References from Genome-Wide Detection of DNA Lesions at Single-Base Resolution Using Glycosylase-Cleavage Ligation-Assisted Sequencing. Local targets link to admitted publications; unresolved targets remain external evidence.
Regulation of transposable elements by DNA modifications
10.1038/s41576-019-0106-6 · 2019 · External reference
5mC and 6mA DNA methylation in eukaryotic genomes
10.1016/j.tibs.2026.01.002 · 2026 · External reference
Single-Nucleotide Resolution Mapping of N(6)-Methyladenine in Genomic DNA
10.1021/acscentsci.3c00481 · 2023 · External reference
Whole-genome mapping of DNA hydroxymethylation at single-base resolution by double-stranded DNA deamination sequencing
10.31635/ccschem.025.202405023 · 2025 · External reference
Bisulfite-free whole-genome mapping of 5-methylcytosine at single-base resolution by NTD-seq
10.1007/s11427-024-2702-8 · 2025 · External reference
Quantitative analysis of N6-methyladenine at single-base resolution in mitochondrial DNA of hepatocellular carcinoma by deaminase-mediated sequencing
10.1016/j.cclet.2024.110747 · 2025 · External reference
Dynamic DNA methylation: In the right place at the right time
10.1126/science.aat6806 · 2018 · External reference
5-Hydroxymethylcytosine: the many faces of the sixth base of mammalian DNA
10.1039/d3cs00858d · 2024 · External reference
Multi-tissue profiling reveals disruptions in nucleic acid modification landscapes induced by the emerging environmental pollutant triclosan
10.1016/j.cclet.2026.112509 · 2026 · External reference
Mass spectrometry analysis reveals changes in patterns and correlations of nucleic acid epigenetic modifications in mouse tissues exposed to polystyrene microplastics
10.1016/j.cclet.2025.111546 · 2026 · External reference
Persistent organic pollutant perfluorooctanoic acid induces alterations in epigenetic modifications of DNA and RNA
10.1016/j.cclet.2025.110957 · 2025 · External reference
Glycosidase-Enabled Locus-Specific Detection of 8-Oxo-7,8-dihydroguanine in Genomes under Oxidative Stress
10.1021/acs.analchem.5c00632 · 2025 · External reference
Enzymatic Cleavage-Mediated Extension Stalling Enables Accurate Recognition and Quantification of Locus-Specific Uracil Modification in DNA
10.1021/acs.analchem.3c01410 · 2023 · External reference
DNA-protein cross-links between abasic DNA damage and mitochondrial transcription factor A (TFAM)
10.1093/nar/gkac1214 · 2023 · External reference
Reactive oxygen species (ROS) as pleiotropic physiological signalling agents
10.1038/s41580-020-0230-3 · 2020 · External reference
Construction of Bioluminescent Sensors for Label-Free, Template-Free, Separation-Free, and Sequence-Independent Detection of both Clustered and Isolated Damage in Genomic DNA
10.1021/acs.analchem.2c03134 · 2022 · External reference
Next-generation DNA damage sequencing
10.1039/d0cs00647e · 2020 · External reference
Nuclear Genomic Instability and Aging
10.1146/annurev-biochem-062917-012239 · 2018 · External reference
DNA damage and transcription stress
10.1016/j.molcel.2023.11.014 · 2024 · External reference
DNA Fragility and Repair: Some Personal Recollections
10.1146/annurev-biochem-071322-020214 · 2023 · External reference
Redox regulation of genome stability by effects on gene expression, epigenetic pathways and DNA damage/repair
10.1016/j.redox.2015.05.008 · 2015 · External reference
On the epigenetic role of guanosine oxidation
10.1016/j.redox.2019.101398 · 2020 · External reference
DNA damage and its links to neuronal aging and degeneration
10.1016/j.neuron.2024.12.001 · 2025 · External reference
Glycosylase Pretreatment with Chemical Labeling-Assisted HPLC-MS/MS: An Ultrasensitive and Reliable Strategy for Quantification of 8-Oxo-7,8-dihydro-2’-deoxyguanosine in Genomic DNA
10.1021/acs.analchem.4c04339 · 2025 · External reference
Liquid chromatography- mass spectrometry for analysis of DNA damages induced by environmental exposure
10.1016/j.trac.2019.115645 · 2019 · External reference
Mass Spectrometry-Based Quantitative Strategies for Assessing the Biological Consequences and Repair of DNA Adducts
10.1021/acs.accounts.5b00437 · 2016 · External reference
Detection of uracil within DNA using a sensitive labeling method for in vitro and cellular applications
10.1093/nar/gkv977 · 2016 · External reference
Sequencing the Mouse Genome for the Oxidatively Modified Base 8-Oxo-7,8-dihydroguanine by OG-Seq
10.1021/jacs.6b12604 · 2017 · External reference
DNA-Protein Cross-Linking Sequencing for Genome-Wide Mapping of Thymidine Glycol
10.1021/jacs.1c10490 · 2022 · External reference
An enzyme-mediated bioorthogonal labeling method for genome-wide mapping of 5-hydroxymethyluracil
10.1039/d1sc03812e · 2021 · External reference
UdgX-Mediated Uracil Sequencing at Single-Nucleotide Resolution
10.1021/jacs.1c11269 · 2022 · External reference
Base-Resolution Analysis of Deoxyuridine at the Genome Scale Based on the Artificial Incorporation Modified Nucleobase
10.1021/acscentsci.0c01504 · 2021 · External reference
Dual chemical labeling enables nucleotide-resolution mapping of DNA abasic sites and common alkylation damage in human mitochondrial DNA
10.1093/nar/gkad502 · 2023 · External reference
The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage
10.1093/nar/gkaa777 · 2020 · External reference
Emerging Roles of DNA Glycosylases and the Base Excision Repair Pathway
10.1016/j.tibs.2019.04.006 · 2019 · External reference
APE1 senses DNA single-strand breaks for repair and signaling
10.1093/nar/gkz1175 · 2020 · External reference
Covalent binding of uracil DNA glycosylase UdgX to abasic DNA upon uracil excision
10.1038/s41589-019-0289-3 · 2019 · External reference
Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing
10.1093/nar/gkac932 · 2022 · External reference
Genome-Wide Single-Nucleotide Resolution Mapping of DNA Damage by Dual Enzyme Cleavage-Assisted Sequencing
10.1021/acs.analchem.6c00913 · 2026 · External reference
cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing
10.1089/cmb.2017.0096 · 2017 · External reference
Genome Project Data Processing, S., The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
10.1016/j.molcel.2010.05.004 · 2010 · External reference
Uracil-DNA glycosylases-structural and functional perspectives on an essential family of DNA repair enzymes
10.1002/pro.2554 · 2014 · External reference
A unique uracil-DNA binding protein of the uracil DNA glycosylase superfamily
10.1093/nar/gkv854 · 2015 · External reference
Folate deficiency induces genomic uracil misincorporation and hypomethylation but does not increase DNA point mutations
10.1053/j.gastro.2008.10.016 · 2009 · External reference
Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA
10.1038/s41589-018-0065-9 · 2018 · External reference
Uracil-DNA glycosylases-structural and functional perspectives on an essential family of DNA repair enzymes
10.1002/pro.2554 · ExternalCitation · doi-reference
Bisulfite-free whole-genome mapping of 5-methylcytosine at single-base resolution by NTD-seq
10.1007/s11427-024-2702-8 · ExternalCitation · doi-reference
Quantitative analysis of N6-methyladenine at single-base resolution in mitochondrial DNA of hepatocellular carcinoma by deaminase-mediated sequencing
10.1016/j.cclet.2024.110747 · ExternalCitation · doi-reference
Persistent organic pollutant perfluorooctanoic acid induces alterations in epigenetic modifications of DNA and RNA
10.1016/j.cclet.2025.110957 · ExternalCitation · doi-reference
Mass spectrometry analysis reveals changes in patterns and correlations of nucleic acid epigenetic modifications in mouse tissues exposed to polystyrene microplastics
10.1016/j.cclet.2025.111546 · ExternalCitation · doi-reference
Multi-tissue profiling reveals disruptions in nucleic acid modification landscapes induced by the emerging environmental pollutant triclosan
10.1016/j.cclet.2026.112509 · ExternalCitation · doi-reference
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
10.1016/j.molcel.2010.05.004 · ExternalCitation · doi-reference
DNA damage and transcription stress
10.1016/j.molcel.2023.11.014 · ExternalCitation · doi-reference
DNA damage and its links to neuronal aging and degeneration
10.1016/j.neuron.2024.12.001 · ExternalCitation · doi-reference
Redox regulation of genome stability by effects on gene expression, epigenetic pathways and DNA damage/repair
10.1016/j.redox.2015.05.008 · ExternalCitation · doi-reference
On the epigenetic role of guanosine oxidation
10.1016/j.redox.2019.101398 · ExternalCitation · doi-reference
Emerging Roles of DNA Glycosylases and the Base Excision Repair Pathway
10.1016/j.tibs.2019.04.006 · ExternalCitation · doi-reference
5mC and 6mA DNA methylation in eukaryotic genomes
10.1016/j.tibs.2026.01.002 · ExternalCitation · doi-reference
Liquid chromatography- mass spectrometry for analysis of DNA damages induced by environmental exposure
10.1016/j.trac.2019.115645 · ExternalCitation · doi-reference
Mass Spectrometry-Based Quantitative Strategies for Assessing the Biological Consequences and Repair of DNA Adducts
10.1021/acs.accounts.5b00437 · ExternalCitation · doi-reference
Construction of Bioluminescent Sensors for Label-Free, Template-Free, Separation-Free, and Sequence-Independent Detection of both Clustered and Isolated Damage in Genomic DNA
10.1021/acs.analchem.2c03134 · ExternalCitation · doi-reference
Enzymatic Cleavage-Mediated Extension Stalling Enables Accurate Recognition and Quantification of Locus-Specific Uracil Modification in DNA
10.1021/acs.analchem.3c01410 · ExternalCitation · doi-reference
Glycosylase Pretreatment with Chemical Labeling-Assisted HPLC-MS/MS: An Ultrasensitive and Reliable Strategy for Quantification of 8-Oxo-7,8-dihydro-2’-deoxyguanosine in Genomic DNA
10.1021/acs.analchem.4c04339 · ExternalCitation · doi-reference
Glycosidase-Enabled Locus-Specific Detection of 8-Oxo-7,8-dihydroguanine in Genomes under Oxidative Stress
10.1021/acs.analchem.5c00632 · ExternalCitation · doi-reference
Genome-Wide Single-Nucleotide Resolution Mapping of DNA Damage by Dual Enzyme Cleavage-Assisted Sequencing
10.1021/acs.analchem.6c00913 · ExternalCitation · doi-reference
Base-Resolution Analysis of Deoxyuridine at the Genome Scale Based on the Artificial Incorporation Modified Nucleobase
10.1021/acscentsci.0c01504 · ExternalCitation · doi-reference
Single-Nucleotide Resolution Mapping of N(6)-Methyladenine in Genomic DNA
10.1021/acscentsci.3c00481 · ExternalCitation · doi-reference
DNA-Protein Cross-Linking Sequencing for Genome-Wide Mapping of Thymidine Glycol
10.1021/jacs.1c10490 · ExternalCitation · doi-reference
UdgX-Mediated Uracil Sequencing at Single-Nucleotide Resolution
10.1021/jacs.1c11269 · ExternalCitation · doi-reference
Sequencing the Mouse Genome for the Oxidatively Modified Base 8-Oxo-7,8-dihydroguanine by OG-Seq
10.1021/jacs.6b12604 · ExternalCitation · doi-reference
Regulation of transposable elements by DNA modifications
10.1038/s41576-019-0106-6 · ExternalCitation · doi-reference
Reactive oxygen species (ROS) as pleiotropic physiological signalling agents
10.1038/s41580-020-0230-3 · ExternalCitation · doi-reference
Genome-wide mapping reveals that deoxyuridine is enriched in the human centromeric DNA
10.1038/s41589-018-0065-9 · ExternalCitation · doi-reference
Covalent binding of uracil DNA glycosylase UdgX to abasic DNA upon uracil excision
10.1038/s41589-019-0289-3 · ExternalCitation · doi-reference
Next-generation DNA damage sequencing
10.1039/d0cs00647e · ExternalCitation · doi-reference
An enzyme-mediated bioorthogonal labeling method for genome-wide mapping of 5-hydroxymethyluracil
10.1039/d1sc03812e · ExternalCitation · doi-reference
5-Hydroxymethylcytosine: the many faces of the sixth base of mammalian DNA
10.1039/d3cs00858d · ExternalCitation · doi-reference
Folate deficiency induces genomic uracil misincorporation and hypomethylation but does not increase DNA point mutations
10.1053/j.gastro.2008.10.016 · ExternalCitation · doi-reference
cutPrimers: A New Tool for Accurate Cutting of Primers from Reads of Targeted Next Generation Sequencing
10.1089/cmb.2017.0096 · ExternalCitation · doi-reference
Genome Project Data Processing, S., The Sequence Alignment/Map format and SAMtools
10.1093/bioinformatics/btp352 · ExternalCitation · doi-reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · ExternalCitation · doi-reference
The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage
10.1093/nar/gkaa777 · ExternalCitation · doi-reference
DNA-protein cross-links between abasic DNA damage and mitochondrial transcription factor A (TFAM)
10.1093/nar/gkac1214 · ExternalCitation · doi-reference
Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing
10.1093/nar/gkac932 · ExternalCitation · doi-reference
Dual chemical labeling enables nucleotide-resolution mapping of DNA abasic sites and common alkylation damage in human mitochondrial DNA
10.1093/nar/gkad502 · ExternalCitation · doi-reference
A unique uracil-DNA binding protein of the uracil DNA glycosylase superfamily
10.1093/nar/gkv854 · ExternalCitation · doi-reference
Detection of uracil within DNA using a sensitive labeling method for in vitro and cellular applications
10.1093/nar/gkv977 · ExternalCitation · doi-reference
APE1 senses DNA single-strand breaks for repair and signaling
10.1093/nar/gkz1175 · ExternalCitation · doi-reference
Dynamic DNA methylation: In the right place at the right time
10.1126/science.aat6806 · ExternalCitation · doi-reference
Nuclear Genomic Instability and Aging
10.1146/annurev-biochem-062917-012239 · ExternalCitation · doi-reference
DNA Fragility and Repair: Some Personal Recollections
10.1146/annurev-biochem-071322-020214 · ExternalCitation · doi-reference
Whole-genome mapping of DNA hydroxymethylation at single-base resolution by double-stranded DNA deamination sequencing
10.31635/ccschem.025.202405023 · ExternalCitation · doi-reference
