Research graph
References from Non-Equilibrium Dynamics of the Time-Dependent Excitonic Coupling in Fluorescent Protein Dimers. Local targets link to admitted publications; unresolved targets remain external evidence.
Unresolved reference
1965 · External reference
Unresolved reference
2004 · External reference
Intermolecular energy migration and fluorescence
1948 · External reference
10.1007/978-1-4899-5169-4
10.1007/978-1-4899-5169-4 · 1971 · External reference
Unresolved reference
2006 · External reference
The role of quantum decoherence in FRET
10.1016/j.bpj.2018.01.010 · 2018 · External reference
VenusA206 dimers behave coherently at room temperature
10.1016/j.bpj.2019.04.014 · 2019 · External reference
The effect of permanent dipoles on dark states in molecular dimers
10.1088/1367-2630/ae2a61 · 2025 · External reference
10.1142/3609
10.1142/3609 · 2000 · External reference
How Proteins Trigger Excitation Energy Transfer in the FMO Complex of Green Sulfur Bacteria
10.1529/biophysj.105.079483 · 2006 · External reference
Calculation of Couplings and Energy-Transfer Pathways between the Pigments of LH2 by the ab Initio Transition Density Cube Method
10.1021/jp9811171 · 1998 · External reference
Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: Reduced hierarchy equation approach
10.1063/1.3155372 · 2009 · External reference
Long-range resonance energy transfer in molecular systems
10.1146/annurev.physchem.54.011002.103746 · 2003 · External reference
Förster Resonance Energy Transfer between Fluorescent Proteins: Efficient Transition Charge-Based Study
10.1021/acs.jpcc.7b00833 · 2017 · External reference
Theory of FRET “Spectroscopic Ruler” for Short Distances: Application to Polyproline
10.1021/acs.jpcb.7b09535 · 2018 · External reference
Polarizable continuum models
10.1002/wcms.1086 · 2012 · External reference
Dexter energy transfer pathways
10.1073/pnas.1517189113 · 2016 · External reference
The electronic couplings in electron transfer and excitation energy transfer
10.1021/ar800153f · 2009 · External reference
Intermolecular Coulomb Couplings from Ab Initio Electrostatic Potentials: Application to Optical Transitions of Strongly Coupled Pigments in Photosynthetic Antennae and Reaction Centers
10.1021/jp0615398 · 2006 · External reference
Nature does not rely on long-lived electronic quantum coherence for photosynthetic energy transfer
10.1073/pnas.1702261114 · 2017 · External reference
A short introduction to the Lindblad master equation
10.1063/1.5115323 · 2020 · External reference
Excitonic Coupling and Photon Antibunching in Venus Yellow Fluorescent Protein Dimers: A Lindblad Master Equation Approach
2025 · External reference
Unresolved reference
2002 · External reference
Pymol: An open-source molecular graphics tool
2002 · External reference
The ORCA quantum chemistry program package
10.1063/5.0004608 · 2020 · External reference
Software update: The ORCA program system-Version 5.0
10.1002/wcms.1606 · 2022 · External reference
A new method for excited states: Similarity transformed equation-of-motion coupled-cluster theory
10.1063/1.474000 · 1997 · External reference
A near-linear scaling equation of motion coupled cluster method for ionized states
10.1063/1.5029470 · 2018 · External reference
A domain-based local pair natural orbital implementation of the equation of motion coupled cluster method for electron attached states
10.1063/1.5089637 · 2019 · External reference
Towards a pair natural orbital coupled cluster method for excited states
10.1063/1.4958734 · 2016 · External reference
A noniterative perturbative triples correction for the spin-flipping and spin-conserving equation-of-motion coupled-cluster methods with single and double substitutions
10.1063/1.3013087 · 2008 · External reference
others Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package
10.1063/5.0055522 · 2021 · External reference
The Two-Photon Polarization Ratio Explains Unusual Shape of the Two-Photon Absorption Spectra of Dyes and Detects Weak Excitonic Coupling in Fluorescent Protein Dimers
10.1021/acs.jpca.6c02663 · 2026 · External reference
Anomalous photophysical behaviors attributed to excitonic coupling in fluorescent proteins
10.1016/j.bpj.2025.10.022 · 2025 · External reference
The Protein Data Bank
10.1093/nar/28.1.235 · 2000 · External reference
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
10.1371/journal.pcbi.1005659 · 2017 · External reference
Unresolved reference
2014 · External reference
Thirty years of density functional theory in computational chemistry: an overview and extensive assessment of 200 density functionals
10.1080/00268976.2017.1333644 · 2017 · External reference
An efficient and near linear scaling pair natural orbital based local coupled cluster method
10.1063/1.4773581 · 2013 · External reference
Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy
10.1039/b508541a · 2005 · External reference
Property-optimized Gaussian basis sets for molecular response calculations
10.1063/1.3484283 · 2010 · External reference
10.1145/2833157.2833162
10.1145/2833157.2833162 · External reference
PyCUDA and PyOpenCL: A scripting-based approach to GPU run-time code generation
10.1016/j.parco.2011.09.001 · 2012 · External reference
Unraveling the role of thermal fluctuations on the exciton structure of the cryptophyte PC612 and PC645 photosynthetic antenna complexes
10.3389/fmolb.2023.1268278 · 2023 · External reference
Development of Electron-Proton Density Functionals for Multicomponent Density Functional Theory
10.1103/physrevlett.101.153001 · 2008 · External reference
Quantum dynamics of excited state proton transfer in green fluorescent protein
10.1063/5.0188834 · 2024 · External reference
Unresolved reference
External reference
Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation
10.1021/ct800526s · 2009 · External reference
TeraChem: A graphical processing unit-accelerated electronic structure package for large-scale ab initio molecular dynamics
10.1002/wcms.1494 · 2021 · External reference
Polarizable continuum models
10.1002/wcms.1086 · ExternalCitation · doi-reference
TeraChem: A graphical processing unit-accelerated electronic structure package for large-scale ab initio molecular dynamics
10.1002/wcms.1494 · ExternalCitation · doi-reference
Software update: The ORCA program system-Version 5.0
10.1002/wcms.1606 · ExternalCitation · doi-reference
10.1007/978-1-4899-5169-4
10.1007/978-1-4899-5169-4 · ExternalCitation · doi-reference
The role of quantum decoherence in FRET
10.1016/j.bpj.2018.01.010 · ExternalCitation · doi-reference
VenusA206 dimers behave coherently at room temperature
10.1016/j.bpj.2019.04.014 · ExternalCitation · doi-reference
Anomalous photophysical behaviors attributed to excitonic coupling in fluorescent proteins
10.1016/j.bpj.2025.10.022 · ExternalCitation · doi-reference
PyCUDA and PyOpenCL: A scripting-based approach to GPU run-time code generation
10.1016/j.parco.2011.09.001 · ExternalCitation · doi-reference
The Two-Photon Polarization Ratio Explains Unusual Shape of the Two-Photon Absorption Spectra of Dyes and Detects Weak Excitonic Coupling in Fluorescent Protein Dimers
10.1021/acs.jpca.6c02663 · ExternalCitation · doi-reference
Theory of FRET “Spectroscopic Ruler” for Short Distances: Application to Polyproline
10.1021/acs.jpcb.7b09535 · ExternalCitation · doi-reference
Förster Resonance Energy Transfer between Fluorescent Proteins: Efficient Transition Charge-Based Study
10.1021/acs.jpcc.7b00833 · ExternalCitation · doi-reference
The electronic couplings in electron transfer and excitation energy transfer
10.1021/ar800153f · ExternalCitation · doi-reference
Quantum Chemistry on Graphical Processing Units. 2. Direct Self-Consistent-Field Implementation
10.1021/ct800526s · ExternalCitation · doi-reference
Intermolecular Coulomb Couplings from Ab Initio Electrostatic Potentials: Application to Optical Transitions of Strongly Coupled Pigments in Photosynthetic Antennae and Reaction Centers
10.1021/jp0615398 · ExternalCitation · doi-reference
Calculation of Couplings and Energy-Transfer Pathways between the Pigments of LH2 by the ab Initio Transition Density Cube Method
10.1021/jp9811171 · ExternalCitation · doi-reference
Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy
10.1039/b508541a · ExternalCitation · doi-reference
A noniterative perturbative triples correction for the spin-flipping and spin-conserving equation-of-motion coupled-cluster methods with single and double substitutions
10.1063/1.3013087 · ExternalCitation · doi-reference
Unified treatment of quantum coherent and incoherent hopping dynamics in electronic energy transfer: Reduced hierarchy equation approach
10.1063/1.3155372 · ExternalCitation · doi-reference
Property-optimized Gaussian basis sets for molecular response calculations
10.1063/1.3484283 · ExternalCitation · doi-reference
A new method for excited states: Similarity transformed equation-of-motion coupled-cluster theory
10.1063/1.474000 · ExternalCitation · doi-reference
An efficient and near linear scaling pair natural orbital based local coupled cluster method
10.1063/1.4773581 · ExternalCitation · doi-reference
Towards a pair natural orbital coupled cluster method for excited states
10.1063/1.4958734 · ExternalCitation · doi-reference
A near-linear scaling equation of motion coupled cluster method for ionized states
10.1063/1.5029470 · ExternalCitation · doi-reference
A domain-based local pair natural orbital implementation of the equation of motion coupled cluster method for electron attached states
10.1063/1.5089637 · ExternalCitation · doi-reference
A short introduction to the Lindblad master equation
10.1063/1.5115323 · ExternalCitation · doi-reference
The ORCA quantum chemistry program package
10.1063/5.0004608 · ExternalCitation · doi-reference
others Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package
10.1063/5.0055522 · ExternalCitation · doi-reference
Quantum dynamics of excited state proton transfer in green fluorescent protein
10.1063/5.0188834 · ExternalCitation · doi-reference
Dexter energy transfer pathways
10.1073/pnas.1517189113 · ExternalCitation · doi-reference
Nature does not rely on long-lived electronic quantum coherence for photosynthetic energy transfer
10.1073/pnas.1702261114 · ExternalCitation · doi-reference
Thirty years of density functional theory in computational chemistry: an overview and extensive assessment of 200 density functionals
10.1080/00268976.2017.1333644 · ExternalCitation · doi-reference
The effect of permanent dipoles on dark states in molecular dimers
10.1088/1367-2630/ae2a61 · ExternalCitation · doi-reference
The Protein Data Bank
10.1093/nar/28.1.235 · ExternalCitation · doi-reference
Development of Electron-Proton Density Functionals for Multicomponent Density Functional Theory
10.1103/physrevlett.101.153001 · ExternalCitation · doi-reference
10.1142/3609
10.1142/3609 · ExternalCitation · doi-reference
10.1145/2833157.2833162
10.1145/2833157.2833162 · ExternalCitation · doi-reference
Long-range resonance energy transfer in molecular systems
10.1146/annurev.physchem.54.011002.103746 · ExternalCitation · doi-reference
OpenMM 7: Rapid development of high performance algorithms for molecular dynamics
10.1371/journal.pcbi.1005659 · ExternalCitation · doi-reference
How Proteins Trigger Excitation Energy Transfer in the FMO Complex of Green Sulfur Bacteria
10.1529/biophysj.105.079483 · ExternalCitation · doi-reference
Unraveling the role of thermal fluctuations on the exciton structure of the cryptophyte PC612 and PC645 photosynthetic antenna complexes
10.3389/fmolb.2023.1268278 · ExternalCitation · doi-reference
