Research graph
References from MonoXtract: A Deep Learning Framework for Extracting Transmembrane Protein Dynamics from Single-Color Single-Molecule Imaging. Local targets link to admitted publications; unresolved targets remain external evidence.
Structure and dynamics of GPCR signaling complexes
10.1038/s41594-017-0011-7 · 2018 · External reference
Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase
10.1038/nature08145 · 2009 · External reference
Protein insertion into the inner membrane of mitochondria: routes and mechanisms
10.1002/2211-5463.13806 · 2024 · External reference
Mechanisms of Tail-Anchored Membrane Protein Targeting and Insertion
10.1146/annurev-cellbio-100616-060839 · 2017 · External reference
Fluorescence imaging of large-scale neural ensemble dynamics
10.1016/j.cell.2021.12.007 · 2022 · External reference
Fluorescence imaging of pathophysiological microenvironments
10.1039/d1cs00083g · 2021 · External reference
Super-resolution fluorescence imaging of extracellular environments
10.1016/j.saa.2021.119767 · 2021 · External reference
Advanced fluorescence imaging of in situ protein aggregation
10.1088/1478-3975/ab694e · 2020 · External reference
Single-molecule fluorescence imaging in living cells
10.1146/annurev-physchem-040412-110127 · 2013 · External reference
Emergence and impact of theranostic-nanoformulation of triple therapeutics for combination cancer therapy
10.1002/smmd.20230035 · 2024 · External reference
Studies of protein folding and dynamics using single molecule fluorescence spectroscopy
10.1039/c3cp55219e · 2014 · External reference
Single Molecule FRET: A Powerful Tool to Study Intrinsically Disordered Proteins
10.3390/biom8040140 · 2018 · External reference
Single-molecule four-color FRET
10.1002/anie.201005402 · 2010 · External reference
Self-limiting multimerization of α-synuclein on membrane and its implication in Parkinson’s diseases
10.1126/sciadv.ado4893 · 2024 · External reference
Single-molecule visualization of dynamic transitions of pore-forming peptides among multiple transmembrane positions
10.1038/ncomms12906 · 2016 · External reference
Single-molecular surface-induced fluorescence attenuation based on thermal reduced graphene oxide
10.7498/aps.72.20230450 · 2023 · External reference
Axial Colocalization of Single Molecules with Nanometer Accuracy Using Metal-Induced Energy Transfer
10.1021/acs.nanolett.8b00425 · 2018 · External reference
Graphene- and metal-induced energy transfer for single-molecule imaging and live-cell nanoscopy with (sub)-nanometer axial resolution
10.1038/s41596-021-00558-6 · 2021 · External reference
Single-molecule dynamic structural biology with vertically arranged DNA on a fluorescence microscope
10.1038/s41592-024-02498-x · 2025 · External reference
Detection of tBid Oligomerization and Membrane Permeabilization by Graphene-Based Single-Molecule Surface-Induced Fluorescence Attenuation
10.1021/acs.nanolett.9b02223 · 2019 · External reference
Detecting Single-Molecule Dynamics on Lipid Membranes with Quenchers-in-a-Liposome FRET
10.1002/anie.201813888 · 2019 · External reference
Subnanometer-Precision Measurements of Transmembrane Motions of Biomolecules in Plasma Membranes Using Quenchers in Extracellular Environment
10.1021/acs.nanolett.0c03941 · 2021 · External reference
Ultra-stable organic fluorophores for single-molecule research
10.1039/c3cs60237k · 2014 · External reference
Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging
10.1146/annurev-physchem-032210-103340 · 2012 · External reference
Surface Preparation for Single-Molecule Fluorescence Imaging in Organic Solvents
10.1021/acs.langmuir.2c02828 · 2022 · External reference
Deep Learning Assisted Plasmonic Dark-Field Microscopy for Super-Resolution Label-Free Imaging
10.1021/acs.nanolett.4c04399 · 2024 · External reference
Automated High-Throughput Atomic Force Microscopy Single-Cell Nanomechanical Assay Enabled by Deep Learning-Based Optical Image Recognition
10.1021/acs.nanolett.4c03861 · 2024 · External reference
iMAX FRET (Information Maximized FRET) for Multipoint Single-Molecule Structural Analysis
10.1021/acs.nanolett.4c00447 · 2024 · External reference
Seeing and Feeling DNA Methylation: Single-Molecule Biophysics Meets Machine Learning
10.1021/acs.nanolett.5c06488 · 2026 · External reference
Caspase-1 and Gasdermin D afford the optimal targets with distinct switching strategies in NLRP1b inflammasome-induced cell death
10.34133/2022/9838341 · 2022 · External reference
Decoding necrosome assembly: harmonizing signal amplification and attenuation through optimal RIP3 stoichiometry
10.1038/s41467-025-67098-5 · 2026 · External reference
MacAma: Multi-AI Agent as Co-Scientist for Automated Meta-Analysis
10.1002/smmd.70045 · 2026 · External reference
Analysis of spatiotemporal dynamic patterns of gene expressionduring mouse embryonic development based on Moran’s I and spatial transcriptomics
10.1088/1674-1056/ade427 · 2025 · External reference
Incoherent feedforward loop dominates the robustness and tunability of necroptosis biphasic, emergent, and coexistent dynamics
10.1016/j.fmre.2024.02.009 · 2026 · External reference
Deep Learning in Digital Breast Tomosynthesis: Current Status, Challenges and Future Trends
10.1002/mco2.70247 · 2025 · External reference
Deep learning-driven protein structure prediction and design: Key model developments by Nobel laureates and multi-domain applications
10.1063/5.0273394 · 2026 · External reference
E-SegNet: E-shaped Structure Networks for Accurate 2D and 3D Medical Image Segmentation
10.34133/research.0869 · 2025 · External reference
Ilastik: interactive machine learning for (bio) image analysis
10.1038/s41592-019-0582-9 · 2019 · External reference
In silico labeling: predicting fluorescent labels in unlabeled images
10.1016/j.cell.2018.03.040 · 2018 · External reference
U-Net: deep learning for cell counting, detection, and morphometry
10.1038/s41592-018-0261-2 · 2019 · External reference
Excitation-multiplexed multicolor superresolution imaging with fm-STORM and fm-DNA-PAINT
10.1073/pnas.1804725115 · 2018 · External reference
Automated Stoichiometry Analysis of Single-Molecule Fluorescence Imaging Traces via Deep Learning
10.1021/jacs.9b00688 · 2019 · External reference
DeepFRET, a software for rapid and automated single-molecule FRET data classification using deep learning
10.7554/elife.60404 · 2020 · External reference
The smfBox is an open-source platform for single-molecule FRET
10.1038/s41467-020-19468-4 · 2020 · External reference
Automatic classification and segmentation of single-molecule fluorescence time traces with deep learning
10.1038/s41467-020-19673-1 · 2020 · External reference
Real-time analysis of nanoscale dynamics in membrane protein insertion via single-molecule imaging
10.52601/bpr.2024.240024 · 2024 · External reference
Deep-LASI: deep-learning assisted, single-molecule imaging analysis of multi-color DNA origami structures
10.1038/s41467-023-42272-9 · 2023 · External reference
Vitae: Vision transformer advanced by exploring intrinsic inductive bias
2021 · External reference
In Tokens-to-token vit: Training vision transformers from scratch on imagenet
2021 · External reference
Single-Molecule Monitoring of Membrane Association of the Necroptosis Executioner MLKL with Discernible Anchoring and Insertion Dynamics
10.1021/acs.nanolett.2c05062 · 2023 · External reference
The Role of Cathelicidin LL-37 in Cancer Development
10.1007/s00005-015-0359-5 · 2016 · External reference
The perpendicular orientation of amphotericin B methyl ester in hydrated lipid bilayers supports the barrel-stave model
10.1021/acs.biochem.9b00180 · 2019 · External reference
Mechanism of lipid bilayer disruption by the human antimicrobial peptide, LL-37
10.1021/bi0273563 · 2003 · External reference
NMR structure of the cathelicidin-derived human antimicrobial peptide LL-37 in dodecylphosphocholine micelles
10.1021/bi702036s · 2008 · External reference
Interaction of LL-37 human cathelicidin peptide with a model microbial-like lipid membrane
10.1016/j.bioelechem.2021.107842 · 2021 · External reference
The Human Cathelicidin Antimicrobial Peptide LL-37 as a Potential Treatment for Polymicrobial Infected Wounds
10.3389/fimmu.2013.00143 · 2013 · External reference
Protein insertion into the inner membrane of mitochondria: routes and mechanisms
10.1002/2211-5463.13806 · ExternalCitation · doi-reference
Single-molecule four-color FRET
10.1002/anie.201005402 · ExternalCitation · doi-reference
Detecting Single-Molecule Dynamics on Lipid Membranes with Quenchers-in-a-Liposome FRET
10.1002/anie.201813888 · ExternalCitation · doi-reference
Deep Learning in Digital Breast Tomosynthesis: Current Status, Challenges and Future Trends
10.1002/mco2.70247 · ExternalCitation · doi-reference
Emergence and impact of theranostic-nanoformulation of triple therapeutics for combination cancer therapy
10.1002/smmd.20230035 · ExternalCitation · doi-reference
MacAma: Multi-AI Agent as Co-Scientist for Automated Meta-Analysis
10.1002/smmd.70045 · ExternalCitation · doi-reference
The Role of Cathelicidin LL-37 in Cancer Development
10.1007/s00005-015-0359-5 · ExternalCitation · doi-reference
Interaction of LL-37 human cathelicidin peptide with a model microbial-like lipid membrane
10.1016/j.bioelechem.2021.107842 · ExternalCitation · doi-reference
In silico labeling: predicting fluorescent labels in unlabeled images
10.1016/j.cell.2018.03.040 · ExternalCitation · doi-reference
Fluorescence imaging of large-scale neural ensemble dynamics
10.1016/j.cell.2021.12.007 · ExternalCitation · doi-reference
Incoherent feedforward loop dominates the robustness and tunability of necroptosis biphasic, emergent, and coexistent dynamics
10.1016/j.fmre.2024.02.009 · ExternalCitation · doi-reference
Super-resolution fluorescence imaging of extracellular environments
10.1016/j.saa.2021.119767 · ExternalCitation · doi-reference
The perpendicular orientation of amphotericin B methyl ester in hydrated lipid bilayers supports the barrel-stave model
10.1021/acs.biochem.9b00180 · ExternalCitation · doi-reference
Surface Preparation for Single-Molecule Fluorescence Imaging in Organic Solvents
10.1021/acs.langmuir.2c02828 · ExternalCitation · doi-reference
Subnanometer-Precision Measurements of Transmembrane Motions of Biomolecules in Plasma Membranes Using Quenchers in Extracellular Environment
10.1021/acs.nanolett.0c03941 · ExternalCitation · doi-reference
Single-Molecule Monitoring of Membrane Association of the Necroptosis Executioner MLKL with Discernible Anchoring and Insertion Dynamics
10.1021/acs.nanolett.2c05062 · ExternalCitation · doi-reference
iMAX FRET (Information Maximized FRET) for Multipoint Single-Molecule Structural Analysis
10.1021/acs.nanolett.4c00447 · ExternalCitation · doi-reference
Automated High-Throughput Atomic Force Microscopy Single-Cell Nanomechanical Assay Enabled by Deep Learning-Based Optical Image Recognition
10.1021/acs.nanolett.4c03861 · ExternalCitation · doi-reference
Deep Learning Assisted Plasmonic Dark-Field Microscopy for Super-Resolution Label-Free Imaging
10.1021/acs.nanolett.4c04399 · ExternalCitation · doi-reference
Seeing and Feeling DNA Methylation: Single-Molecule Biophysics Meets Machine Learning
10.1021/acs.nanolett.5c06488 · ExternalCitation · doi-reference
Axial Colocalization of Single Molecules with Nanometer Accuracy Using Metal-Induced Energy Transfer
10.1021/acs.nanolett.8b00425 · ExternalCitation · doi-reference
Detection of tBid Oligomerization and Membrane Permeabilization by Graphene-Based Single-Molecule Surface-Induced Fluorescence Attenuation
10.1021/acs.nanolett.9b02223 · ExternalCitation · doi-reference
Mechanism of lipid bilayer disruption by the human antimicrobial peptide, LL-37
10.1021/bi0273563 · ExternalCitation · doi-reference
NMR structure of the cathelicidin-derived human antimicrobial peptide LL-37 in dodecylphosphocholine micelles
10.1021/bi702036s · ExternalCitation · doi-reference
Automated Stoichiometry Analysis of Single-Molecule Fluorescence Imaging Traces via Deep Learning
10.1021/jacs.9b00688 · ExternalCitation · doi-reference
Torque generation and elastic power transmission in the rotary F(O)F(1)-ATPase
10.1038/nature08145 · ExternalCitation · doi-reference
Single-molecule visualization of dynamic transitions of pore-forming peptides among multiple transmembrane positions
10.1038/ncomms12906 · ExternalCitation · doi-reference
The smfBox is an open-source platform for single-molecule FRET
10.1038/s41467-020-19468-4 · ExternalCitation · doi-reference
Automatic classification and segmentation of single-molecule fluorescence time traces with deep learning
10.1038/s41467-020-19673-1 · ExternalCitation · doi-reference
Deep-LASI: deep-learning assisted, single-molecule imaging analysis of multi-color DNA origami structures
10.1038/s41467-023-42272-9 · ExternalCitation · doi-reference
Decoding necrosome assembly: harmonizing signal amplification and attenuation through optimal RIP3 stoichiometry
10.1038/s41467-025-67098-5 · ExternalCitation · doi-reference
U-Net: deep learning for cell counting, detection, and morphometry
10.1038/s41592-018-0261-2 · ExternalCitation · doi-reference
Ilastik: interactive machine learning for (bio) image analysis
10.1038/s41592-019-0582-9 · ExternalCitation · doi-reference
Single-molecule dynamic structural biology with vertically arranged DNA on a fluorescence microscope
10.1038/s41592-024-02498-x · ExternalCitation · doi-reference
Structure and dynamics of GPCR signaling complexes
10.1038/s41594-017-0011-7 · ExternalCitation · doi-reference
Graphene- and metal-induced energy transfer for single-molecule imaging and live-cell nanoscopy with (sub)-nanometer axial resolution
10.1038/s41596-021-00558-6 · ExternalCitation · doi-reference
Studies of protein folding and dynamics using single molecule fluorescence spectroscopy
10.1039/c3cp55219e · ExternalCitation · doi-reference
Ultra-stable organic fluorophores for single-molecule research
10.1039/c3cs60237k · ExternalCitation · doi-reference
Fluorescence imaging of pathophysiological microenvironments
10.1039/d1cs00083g · ExternalCitation · doi-reference
Deep learning-driven protein structure prediction and design: Key model developments by Nobel laureates and multi-domain applications
10.1063/5.0273394 · ExternalCitation · doi-reference
Excitation-multiplexed multicolor superresolution imaging with fm-STORM and fm-DNA-PAINT
10.1073/pnas.1804725115 · ExternalCitation · doi-reference
Advanced fluorescence imaging of in situ protein aggregation
10.1088/1478-3975/ab694e · ExternalCitation · doi-reference
Analysis of spatiotemporal dynamic patterns of gene expressionduring mouse embryonic development based on Moran’s I and spatial transcriptomics
10.1088/1674-1056/ade427 · ExternalCitation · doi-reference
Self-limiting multimerization of α-synuclein on membrane and its implication in Parkinson’s diseases
10.1126/sciadv.ado4893 · ExternalCitation · doi-reference
Mechanisms of Tail-Anchored Membrane Protein Targeting and Insertion
10.1146/annurev-cellbio-100616-060839 · ExternalCitation · doi-reference
Photophysics of fluorescent probes for single-molecule biophysics and super-resolution imaging
10.1146/annurev-physchem-032210-103340 · ExternalCitation · doi-reference
Single-molecule fluorescence imaging in living cells
10.1146/annurev-physchem-040412-110127 · ExternalCitation · doi-reference
The Human Cathelicidin Antimicrobial Peptide LL-37 as a Potential Treatment for Polymicrobial Infected Wounds
10.3389/fimmu.2013.00143 · ExternalCitation · doi-reference
Single Molecule FRET: A Powerful Tool to Study Intrinsically Disordered Proteins
10.3390/biom8040140 · ExternalCitation · doi-reference
Caspase-1 and Gasdermin D afford the optimal targets with distinct switching strategies in NLRP1b inflammasome-induced cell death
10.34133/2022/9838341 · ExternalCitation · doi-reference
E-SegNet: E-shaped Structure Networks for Accurate 2D and 3D Medical Image Segmentation
10.34133/research.0869 · ExternalCitation · doi-reference
Real-time analysis of nanoscale dynamics in membrane protein insertion via single-molecule imaging
10.52601/bpr.2024.240024 · ExternalCitation · doi-reference
Single-molecular surface-induced fluorescence attenuation based on thermal reduced graphene oxide
10.7498/aps.72.20230450 · ExternalCitation · doi-reference
DeepFRET, a software for rapid and automated single-molecule FRET data classification using deep learning
10.7554/elife.60404 · ExternalCitation · doi-reference
