References

Controlling Electroosmosis in Nanopores without Altering the Nanopore Sensing Region

10.1002/adma.202401761 · ExternalCitation · doi-reference

Identification of Oligosaccharide Isomers Using Electrostatically Asymmetric OmpF Nanopore

10.1002/anie.202422118 · ExternalCitation · doi-reference

Nanopore-Based High-Resolution Detection of Multiple Post-Translational Modifications in Protein

10.1002/anie.202423801 · ExternalCitation · doi-reference

T232K/K238Q Aerolysin Nanopore for Mapping Adjacent Phosphorylation Sites of a Single Tau Peptide

10.1002/smtd.202000014 · ExternalCitation · doi-reference

Peptide Translocation through the Mesoscopic Channel: Binding Kinetics at the Single Molecule Level

10.1007/s00249-012-0885-6 · ExternalCitation · doi-reference

Visual Molecular Dynamics

10.1016/0263-7855(96)00018-5 · ExternalCitation · doi-reference

ROSETTA3: an Object-Oriented Software Suite for the Simulation and Design of Macromolecules

10.1016/b978-0-12-381270-4.00019-6 · ExternalCitation · doi-reference

CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes

10.1016/j.bpj.2009.04.013 · ExternalCitation · doi-reference

Residue Ionization and Ion Transport through OmpF Channels

10.1016/s0006-3495(03)74788-2 · ExternalCitation · doi-reference

Ions and Counterions in a Biological Channel: a Molecular Dynamics Simulation of OmpF Porin from Escherichia Coli in an Explicit Membrane with 1 M KCl Aqueous Salt Solution

10.1016/s0022-2836(02)00380-7 · ExternalCitation · doi-reference

Ion Permeation and Selectivity of OmpF Porin: a Theoretical Study Based on Molecular Dynamics, Brownian Dynamics, and Continuum Electrodiffusion Theory

10.1016/s0022-2836(02)00778-7 · ExternalCitation · doi-reference

Validity of Approximated Expressions for Electro-Osmotic Flow in Nanopores Evaluated by Continuum Electrohydrodynamics and Atomistic Simulations

10.1017/flo.2025.10020 · ExternalCitation · doi-reference

Accurate Data Process for Nanopore Analysis

10.1021/ac5028758 · ExternalCitation · doi-reference

Single-Molecule Observation of Selenoenzyme Intermediates in a Semisynthetic Seleno-α-Hemolysin Nanoreactor

10.1021/acs.analchem.2c01204 · ExternalCitation · doi-reference

MOSAIC: a Modular Single-Molecule Analysis Interface for Decoding Multistate Nanopore Data

10.1021/acs.analchem.6b03725 · ExternalCitation · doi-reference

Conformational Dynamics of Loop L3 in OmpF: Implications Toward Antibiotic Translocation and Voltage Gating

10.1021/acs.jcim.2c01108 · ExternalCitation · doi-reference

Antibiotic Charge Profile Determines the Extent of L3 Dynamics in OmpF: an Expedited Passage for Molecules with a Positive Charge

10.1021/acs.jpcb.3c04557 · ExternalCitation · doi-reference

Electroosmotic Trap Against the Electrophoretic Force Near a Protein Nanopore Reveals Peptide Dynamics During Capture and Translocation

10.1021/acsami.6b03697 · ExternalCitation · doi-reference

Analytical Model for Particle Capture in Nanopores Elucidates Competition Among Electrophoresis, Electroosmosis, and Dielectrophoresis

10.1021/acsnano.0c06981 · ExternalCitation · doi-reference

Geometrically Induced Selectivity and Unidirectional Electroosmosis in Uncharged Nanopores

10.1021/acsnano.1c03017 · ExternalCitation · doi-reference

Identification of Conformational Variants for Bradykinin Biomarker Peptides from a Biofluid Using a Nanopore and Machine Learning

10.1021/acsnano.3c08433 · ExternalCitation · doi-reference

Electro-Osmotic Flow Generation via a Sticky Ion Action

10.1021/acsnano.4c00829 · ExternalCitation · doi-reference

Dynamics and Energy Contributions for Transport of Unfolded Pertactin through a Protein Nanopore

10.1021/acsnano.5b03053 · ExternalCitation · doi-reference

P-LINCS: a Parallel Linear Constraint Solver for Molecular Simulation

10.1021/ct700200b · ExternalCitation · doi-reference

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

10.1021/ct700301q · ExternalCitation · doi-reference

Improved Treatment of the Protein Backbone in Empirical Force Fields

10.1021/ja036959e · ExternalCitation · doi-reference

A Structural Study of Ion Permeation in OmpF Porin from Anomalous X-Ray Diffraction and Molecular Dynamics Simulations

10.1021/ja407783a · ExternalCitation · doi-reference

Transmembrane Epitope Delivery by Passive Protein Threading through the Pores of the OmpF Porin Trimer

10.1021/jacs.0c02362 · ExternalCitation · doi-reference

Identification of Single Amino Acid Chiral and Positional Isomers Using an Electrostatically Asymmetric Nanopore

10.1021/jacs.2c03923 · ExternalCitation · doi-reference

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

10.1021/jp101759q · ExternalCitation · doi-reference

Pulling Peptides Across Nanochannels: Resolving Peptide Binding and Translocation through the Hetero-Oligomeric Channel from Nocardia Farcinica

10.1021/nn303900y · ExternalCitation · doi-reference

Unfoldase-Mediated Protein Translocation through an α-Hemolysin Nanopore

10.1038/nbt.2503 · ExternalCitation · doi-reference

Three Decades of Nanopore Sequencing

10.1038/nbt.3423 · ExternalCitation · doi-reference

Designing Antimicrobial Peptides: Form Follows Function

10.1038/nrd3591 · ExternalCitation · doi-reference

Single-Molecule Fingerprinting of Protein-Drug Interaction Using a Funneled Biological Nanopore

10.1038/s41467-023-37098-4 · ExternalCitation · doi-reference

Nanopore-Based Technologies Beyond DNA Sequencing

10.1038/s41565-022-01193-2 · ExternalCitation · doi-reference

Single-Molecule Sensing Inside Stereo-And Regio-Defined Hetero-Nanopores

10.1038/s41565-024-01721-2 · ExternalCitation · doi-reference

Electrical Recognition of the Twenty Proteinogenic Amino Acids Using an Aerolysin Nanopore

10.1038/s41587-019-0345-2 · ExternalCitation · doi-reference

Unambiguous Discrimination of All 20 Proteinogenic Amino Acids and Their Modifications by Nanopore

10.1038/s41592-023-02021-8 · ExternalCitation · doi-reference

An Engineered Third Electrostatic Constriction of Aerolysin to Manipulate Heterogeneously Charged Peptide Transport

10.1039/d1sc06459b · ExternalCitation · doi-reference

High-Throughput Single Biomarker Identification Using Droplet Nanopore

10.1039/d3sc06795e · ExternalCitation · doi-reference

Early Versus Delayed, Provisional Eptifibatide in Acute Coronary Syndromes

10.1056/nejmoa0901316 · ExternalCitation · doi-reference

Polymer Capture by Electro-Osmotic Flow of Oppositely Charged Nanopores

10.1063/1.2723088 · ExternalCitation · doi-reference

A Smooth Particle Mesh Ewald Method

10.1063/1.470117 · ExternalCitation · doi-reference

Characterization of Individual Polynucleotide Molecules Using a Membrane Channel

10.1073/pnas.93.24.13770 · ExternalCitation · doi-reference

Electroosmosis in Nanopores: Computational Methods and Technological Applications

10.1080/23746149.2022.2036638 · ExternalCitation · doi-reference

Coupling Site-Directed Mutagenesis with High-Level Expression: Large Scale Production of Mutant Porins from E. Coli

10.1111/j.1574-6968.1998.tb13027.x · ExternalCitation · doi-reference

Intrinsically Disordered Protein Threads through the Bacterial Outer-Membrane Porin OmpF

10.1126/science.1237864 · ExternalCitation · doi-reference

Bioinformatic and Computational Biophysics Tools for Nanopore Engineering: a Review from Standard Approaches to Machine Learning Advancements

10.1186/s12951-026-04225-4 · ExternalCitation · doi-reference

Anniversary Review: Octreotide, 40 Years Later

10.1530/eje-19-0074 · ExternalCitation · doi-reference