Research graph
References from HLA-DRB1 Polymorphisms Modulate the Dynamic Compatibility between the Presentation of EBNA1400–413 and MBP85–99. Local targets link to admitted publications; unresolved targets remain external evidence.
Diagnosis of Multiple Sclerosis: 2017 Revisions of the McDonald Criteria
10.1016/s1474-4422(17)30470-2 · 2018 · External reference
Multiple Sclerosis
10.1016/s0140-6736(23)01473-3 · 2024 · External reference
Epidemiology of Multiple Sclerosis: Global, Regional, National and Sub-National-Level Estimates and Future Projections
10.1007/s44197-025-00353-6 · 2025 · External reference
The Genetics of Multiple Sclerosis: From 0 to 200 in 50 Years
10.1016/j.tig.2017.09.004 · 2017 · External reference
Association of the HLA-DRB1*15 Allele Group and the DRB1*1501 and DRB1*1503 Alleles with Multiple Sclerosis in White and Mulatto Samples from Brazil
10.1016/j.jneuroim.2007.06.009 · 2007 · External reference
Uncoupling the Roles of HLA-DRB1 and HLA-DRB5 Genes in Multiple Sclerosis
10.4049/jimmunol.181.8.5473 · 2008 · External reference
The Immunogenetics of Multiple Sclerosis: A Comprehensive Review
10.1016/j.jaut.2015.06.010 · 2015 · External reference
Epstein–Barr Virus as a Leading Cause of Multiple Sclerosis: Mechanisms and Implications
10.1038/s41582-023-00775-5 · 2023 · External reference
Longitudinal Analysis Reveals High Prevalence of Epstein-Barr Virus Associated with Multiple Sclerosis
10.1126/science.abj8222 · 2022 · External reference
T Cells Implicate Epstein–Barr Virus in Multiple Sclerosis Pathogenesis
10.1038/s41582-024-00939-x · 2024 · External reference
Environmental Risk Factors for Multiple Sclerosis: A Comprehensive Systematic Review and Meta-Analysis
10.1007/s00415-025-13248-0 · 2025 · External reference
MHC Class II Presentation in Autoimmunity
10.3390/cells12020314 · 2023 · External reference
Present Yourself! By MHC Class I and MHC Class II Molecules
10.1016/j.it.2016.08.010 · 2016 · External reference
MHC-II Dynamics Are Maintained in HLA-DR Allotypes to Ensure Catalyzed Peptide Exchange
10.1038/s41589-023-01316-3 · 2023 · External reference
Multiple Sclerosis: Doubling down on MHC
10.1016/j.tig.2021.04.012 · 2021 · External reference
Structural Insights Into HLA-DM Mediated MHC II Peptide Exchange
2011 · External reference
Molecular Determinants Regulating the Plasticity of the MHC Class II Immunopeptidome
10.3389/fimmu.2022.878271 · 2022 · External reference
Major Histocompatibility Complex (MHC) Class I and Class II Proteins: Impact of Polymorphism on Antigen Presentation
10.1016/j.coi.2021.04.009 · 2021 · External reference
The Involvement of HLA Class II Alleles in Multiple Sclerosis: A Systematic Review with Meta-Analysis
10.1155/2019/1409069 · 2019 · External reference
Crystal Structure of HLA-DR2 (DRA*0101, DRB1*1501) Complexed with a Peptide from Human Myelin Basic Protein
10.1084/jem.188.8.1511 · 1998 · External reference
Molecular Mechanisms for Contribution of MHC Molecules to Autoimmune Diseases
10.1016/j.coi.2014.08.005 · 2014 · External reference
Myelin Basic Protein–Specific T Lymphocytes in Multiple Sclerosis and Controls: Precursor Frequency, Fine Specificity, and Cytotoxicity
10.1002/ana.410320305 · 1992 · External reference
Citrullination of Myelin Basic Protein Induces a Th17-Cell Response in Healthy Individuals and Enhances the Presentation of MBP85-99 in Patients with Multiple Sclerosis
10.1016/j.jaut.2023.103092 · 2023 · External reference
A Myelin Basic Protein Peptide Is Recognized by Cytotoxic T Cells in the Context of Four HLA-DR Types Associated with Multiple Sclerosis
10.1084/jem.173.1.19 · 1991 · External reference
Multiple Sclerosis and Myelin Basic Protein: Insights into Protein Disorder and Disease
10.1007/s00726-021-03111-7 · 2022 · External reference
Myelin Autoreactivity in Multiple Sclerosis: Recognition of Myelin Basic Protein in the Context of HLA-DR2 Products by T Lymphocytes of Multiple-Sclerosis Patients and Healthy Donors
10.1073/pnas.87.20.7968 · 1990 · External reference
Protective Allele for Multiple Sclerosis HLA-DRB1*01:01 Provides Kinetic Discrimination of Myelin and Exogenous Antigenic Peptides
10.3389/fimmu.2019.03088 · 2020 · External reference
Epstein Barr Virus and Mycobacterium Avium Subsp. Paratuberculosis Peptides Are Recognized in Sera and Cerebrospinal Fluid of MS Patients
10.1038/srep22401 · 2016 · External reference
Epstein-Barr Virus and Mycobacterium Avium Subsp. Paratuberculosis Peptides Are Cross Recognized by Anti-Myelin Basic Protein Antibodies in Multiple Sclerosis Patients
10.1016/j.jneuroim.2014.02.013 · 2014 · External reference
Epstein-Barr Virus Nuclear Antigen-1 B-Cell Epitopes in Multiple Sclerosis Twins
10.1177/1352458511410515 · 2011 · External reference
Early Identification of Individuals at Risk for Multiple Sclerosis by Quantification of EBNA-1381-452-Specific Antibody Titers
10.1038/s41467-025-61751-9 · 2025 · External reference
Molecular Mimicry as an Inducing Trigger for CNS Autoimmune Demyelinating Disease
10.1111/j.1600-065x.2011.01076.x · 2012 · External reference
The Role of Epstein–Barr Virus Molecular Mimicry in Various Autoimmune Diseases
10.1111/sji.70016 · 2025 · External reference
Molecular Mimicry as a Mechanism of Autoimmune Disease
10.1007/s12016-011-8294-7 · 2012 · External reference
Immunopathology of Multiple Sclerosis
10.1038/nri3871 · 2015 · External reference
Antibody Cross-Reactivity in Auto-Immune Diseases
10.3390/ijms241713609 · 2023 · External reference
Attenuated Immune Control of Epstein–Barr Virus in Humanized Mice Is Associated with the Multiple Sclerosis Risk Factor HLA-DR15
10.1002/eji.202048655 · 2021 · External reference
EBV Infection and HLA-DR15 Jointly Drive Multiple Sclerosis by Myelin Peptide Presentation
10.1016/j.cell.2025.12.046 · 2026 · External reference
A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism
10.1074/jbc.m114.563502 · 2014 · External reference
Moving beyond Static Snapshots: Protein Dynamics and the Protein Data Bank
10.1016/j.jbc.2021.100749 · 2021 · External reference
Role of Computational Methods in Going beyond X-Ray Crystallography to Explore Protein Structure and Dynamics
10.3390/ijms19113401 · 2018 · External reference
Structural and Dynamical Insights on HLA-DR2 Complexes That Confer Susceptibility to Multiple Sclerosis in Sardinia: A Molecular Dynamics Simulation Study
10.1371/journal.pone.0059711 · 2013 · External reference
Molecular Insights from Conformational Ensembles via Machine Learning
10.1016/j.bpj.2019.12.016 · 2020 · External reference
Unsupervised and Supervised AI on Molecular Dynamics Simulations Reveals Complex Characteristics of HLA-A2-Peptide Immunogenicity
10.1093/bib/bbad504 · 2023 · External reference
Comparative Protein Modelling by Satisfaction of Spatial Restraints
10.1006/jmbi.1993.1626 · 1993 · External reference
Comparative Protein Structure Modeling Using MODELLER
10.1002/cpbi.3 · 2016 · External reference
UniProt: The Universal Protein Knowledgebase in 2023
10.1093/nar/gkac1052 · 2023 · External reference
Unconventional Topology of Self Peptide-Major Histocompatibility Complex Binding by a Human Autoimmune T Cell Receptor
10.1038/ni1187 · 2005 · External reference
AlphaFold Protein Structure Database in 2024: Providing Structure Coverage for over 214 Million Protein Sequences
10.1093/nar/gkad1011 · 2024 · External reference
AlphaFold Protein Structure Database: Massively Expanding the Structural Coverage of Protein-Sequence Space with High-Accuracy Models
10.1093/nar/gkab1061 · 2022 · External reference
UCSF Chimera - A Visualization System for Exploratory Research and Analysis
10.1002/jcc.20084 · 2004 · External reference
Modeling of Loops in Protein Structures
10.1110/ps.9.9.1753 · 2000 · External reference
The IPD-IMGT/HLA Database
10.1093/nar/gkac1011 · 2023 · External reference
GalaxyPepDock: A Protein-Peptide Docking Tool Based on Interaction Similarity and Energy Optimization
10.1093/nar/gkv495 · 2015 · External reference
Multiple Roles of the Invariant Chain in MHC Class II Function
10.1016/s0167-4889(01)00166-5 · 2002 · External reference
CHARMM-GUI: A Web-Based Graphical User Interface for CHARMM
10.1002/jcc.20945 · 2008 · External reference
CHARMM-GUI Membrane Builder toward Realistic Biological Membrane Simulations
10.1002/jcc.23702 · 2014 · External reference
OPM Database and PPM Web Server: Resources for Positioning of Proteins in Membranes
10.1093/nar/gkr703 · 2012 · External reference
Mammalian Lipids: Structure, Synthesis and Function
10.1042/ebc20200067 · 2021 · External reference
Mimicking the Mammalian Plasma Membrane: An Overview of Lipid Membrane Models for Biophysical Studies
10.3390/biomimetics6010003 · 2021 · External reference
Cholesterol Accumulation on Dendritic Cells Reverses Chronic Hepatitis B Virus Infection-Induced Dysfunction
10.1038/s41423-022-00939-1 · 2022 · External reference
Comparison of Simple Potential Functions for Simulating Liquid Water
10.1063/1.445869 · 1983 · External reference
CHARMM36m: An Improved Force Field for Folded and Intrinsically Disordered Proteins
10.1038/nmeth.4067 · 2017 · External reference
GROMACS: Fast, Flexible, and Free
10.1002/jcc.20291 · 2005 · External reference
A Computer Simulation Method for the Calculation of Equilibrium Constants for the Formation of Physical Clusters of Molecules: Application to Small Water Clusters
10.1063/1.442716 · 1982 · External reference
Ewald Summation Techniques in Perspective: A Survey
10.1016/0010-4655(96)00016-1 · 1996 · External reference
LINCS: A Linear Constraint Solver for Molecular Simulations
10.1002/(sici)1096-987x(199709)18:12<1463::aid-jcc4>3.0.co;2-h · 1997 · External reference
Molecular Dynamics with Coupling to an External Bath
10.1063/1.448118 · 1984 · External reference
A Molecular Dynamics Method for Simulations in the Canonical Ensemble
10.1080/00268978400101201 · 1984 · External reference
Canonical Dynamics: Equilibrium Phase-Space Distributions
10.1103/physreva.31.1695 · 1985 · External reference
Polymorphic Transitions in Single Crystals: A New Molecular Dynamics Method
10.1063/1.328693 · 1981 · External reference
MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
10.1002/jcc.21787 · 2011 · External reference
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
10.25080/majora-629e541a-00e · 2016 · External reference
LiPyphilic: A Python Toolkit for the Analysis of Lipid Membrane Simulations
10.1021/acs.jctc.1c00447 · 2021 · External reference
On the Calculation of Acyl Chain Order Parameters from Lipid Simulations
10.1021/acs.jctc.7b00643 · 2017 · External reference
Shedding Light on the Structural Properties of Lipid Bilayers Using Molecular Dynamics Simulation: A Review Study
10.1039/c8ra08441f · 2019 · External reference
VMD: Visual Molecular Dynamics
10.1016/0263-7855(96)00018-5 · 1996 · External reference
The MM/PBSA and MM/GBSA Methods to Estimate Ligand-Binding Affinities
10.1517/17460441.2015.1032936 · 2015 · External reference
Gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS
10.1021/acs.jctc.1c00645 · 2021 · External reference
Perspective: Identification of Collective Variables and Metastable States of Protein Dynamics
10.1063/1.5049637 · 2018 · External reference
Structural Study of Cell Attachment Peptide Derived from Laminin by Molecular Dynamics Simulation
10.1371/journal.pone.0149474 · 2016 · External reference
Random Forests
10.1023/a:1010933404324 · 2001 · External reference
Class II HLA-Peptide Binding Prediction Using Structural Principles
10.1016/j.humimm.2008.12.012 · 2009 · External reference
The Interpretation of Protein Structures: Estimation of Static Accessibility
10.1016/0022-2836(71)90324-x · 1971 · External reference
Environment and Exposure to Solvent of Protein Atoms. Lysozyme and Insulin
10.1016/0022-2836(73)90011-9 · 1973 · External reference
Quantum Chemical Analysis of MHC-Peptide Interactions for Vaccine Design
10.2174/138955710791572488 · 2010 · External reference
A Naturally Selected Aβ T Cell Receptor Binds HLA-DQ2Molecules without Co-Contacting the Presented Peptide
10.1038/s41467-025-58690-w · 2025 · External reference
How a Single T Cell Receptor Recognizes Both Self and Foreign MHC
10.1016/j.cell.2007.01.048 · 2007 · External reference
A Functional Hot Spot for Antigen Recognition in a Superagonist TCR/MHC Complex
10.1016/s1074-7613(00)80178-8 · 2000 · External reference
Structural Basis of Plasticity in T Cell Receptor Recognition of a Self Peptide-MHC Antigen
10.1126/science.279.5354.1166 · 1998 · External reference
Crystal Structure of a T Cell Receptor Bound to an Allogeneic MHC Molecule
10.1038/79728 · 2000 · External reference
How TCRs Bind MHCs, Peptides, and Coreceptors
10.1146/annurev.immunol.23.021704.115658 · 2006 · External reference
Crossreactivity of a Human Autoimmune TCR Is Dominated by a Single TCR Loop
10.1038/ncomms3623 · 2013 · External reference
Conformational Melding Permits a Conserved Binding Geometry in TCR Recognition of Foreign and Self Molecular Mimics
10.4049/jimmunol.1003150 · 2011 · External reference
Ensemble Molecular Mimicry Correlates with Antibody Cross-Reactivity in Proteome-Wide Studies
10.3389/fimmu.2026.1749369 · 2026 · External reference
The Kinetic Stability of MHC Class II:Peptide Complexes Is a Key Parameter That Dictates Immunodominance
10.1016/j.immuni.2005.05.009 · 2005 · External reference
Fine-Mapping the Genetic Association of the Major Histocompatibility Complex in Multiple Sclerosis: HLA and Non-HLA Effects
10.1371/journal.pgen.1003926 · 2013 · External reference
HLA-DR Beta Chain Residue 86 Controls DR Alpha Beta Dimer Stability
10.1002/eji.1830230624 · 1993 · External reference
Dominant Protection from HLA-Linked Autoimmunity by Antigen-Specific Regulatory T Cells
10.1038/nature22329 · 2017 · External reference
Binding of Myelin Basic Protein Peptides to Human Histocompatibility Leukocyte Antigen Class II Molecules and Their Recognition by T Cells from Multiple Sclerosis Patients
10.1172/jci116242 · 1993 · External reference
LINCS: A Linear Constraint Solver for Molecular Simulations
10.1002/(sici)1096-987x(199709)18:12<1463::aid-jcc4>3.0.co;2-h · ExternalCitation · doi-reference
Myelin Basic Protein–Specific T Lymphocytes in Multiple Sclerosis and Controls: Precursor Frequency, Fine Specificity, and Cytotoxicity
10.1002/ana.410320305 · ExternalCitation · doi-reference
Comparative Protein Structure Modeling Using MODELLER
10.1002/cpbi.3 · ExternalCitation · doi-reference
HLA-DR Beta Chain Residue 86 Controls DR Alpha Beta Dimer Stability
10.1002/eji.1830230624 · ExternalCitation · doi-reference
Attenuated Immune Control of Epstein–Barr Virus in Humanized Mice Is Associated with the Multiple Sclerosis Risk Factor HLA-DR15
10.1002/eji.202048655 · ExternalCitation · doi-reference
UCSF Chimera - A Visualization System for Exploratory Research and Analysis
10.1002/jcc.20084 · ExternalCitation · doi-reference
GROMACS: Fast, Flexible, and Free
10.1002/jcc.20291 · ExternalCitation · doi-reference
CHARMM-GUI: A Web-Based Graphical User Interface for CHARMM
10.1002/jcc.20945 · ExternalCitation · doi-reference
MDAnalysis: A Toolkit for the Analysis of Molecular Dynamics Simulations
10.1002/jcc.21787 · ExternalCitation · doi-reference
CHARMM-GUI Membrane Builder toward Realistic Biological Membrane Simulations
10.1002/jcc.23702 · ExternalCitation · doi-reference
Comparative Protein Modelling by Satisfaction of Spatial Restraints
10.1006/jmbi.1993.1626 · ExternalCitation · doi-reference
Environmental Risk Factors for Multiple Sclerosis: A Comprehensive Systematic Review and Meta-Analysis
10.1007/s00415-025-13248-0 · ExternalCitation · doi-reference
Multiple Sclerosis and Myelin Basic Protein: Insights into Protein Disorder and Disease
10.1007/s00726-021-03111-7 · ExternalCitation · doi-reference
Molecular Mimicry as a Mechanism of Autoimmune Disease
10.1007/s12016-011-8294-7 · ExternalCitation · doi-reference
Epidemiology of Multiple Sclerosis: Global, Regional, National and Sub-National-Level Estimates and Future Projections
10.1007/s44197-025-00353-6 · ExternalCitation · doi-reference
Ewald Summation Techniques in Perspective: A Survey
10.1016/0010-4655(96)00016-1 · ExternalCitation · doi-reference
The Interpretation of Protein Structures: Estimation of Static Accessibility
10.1016/0022-2836(71)90324-x · ExternalCitation · doi-reference
Environment and Exposure to Solvent of Protein Atoms. Lysozyme and Insulin
10.1016/0022-2836(73)90011-9 · ExternalCitation · doi-reference
VMD: Visual Molecular Dynamics
10.1016/0263-7855(96)00018-5 · ExternalCitation · doi-reference
Molecular Insights from Conformational Ensembles via Machine Learning
10.1016/j.bpj.2019.12.016 · ExternalCitation · doi-reference
How a Single T Cell Receptor Recognizes Both Self and Foreign MHC
10.1016/j.cell.2007.01.048 · ExternalCitation · doi-reference
EBV Infection and HLA-DR15 Jointly Drive Multiple Sclerosis by Myelin Peptide Presentation
10.1016/j.cell.2025.12.046 · ExternalCitation · doi-reference
Molecular Mechanisms for Contribution of MHC Molecules to Autoimmune Diseases
10.1016/j.coi.2014.08.005 · ExternalCitation · doi-reference
Major Histocompatibility Complex (MHC) Class I and Class II Proteins: Impact of Polymorphism on Antigen Presentation
10.1016/j.coi.2021.04.009 · ExternalCitation · doi-reference
Class II HLA-Peptide Binding Prediction Using Structural Principles
10.1016/j.humimm.2008.12.012 · ExternalCitation · doi-reference
The Kinetic Stability of MHC Class II:Peptide Complexes Is a Key Parameter That Dictates Immunodominance
10.1016/j.immuni.2005.05.009 · ExternalCitation · doi-reference
Present Yourself! By MHC Class I and MHC Class II Molecules
10.1016/j.it.2016.08.010 · ExternalCitation · doi-reference
The Immunogenetics of Multiple Sclerosis: A Comprehensive Review
10.1016/j.jaut.2015.06.010 · ExternalCitation · doi-reference
Citrullination of Myelin Basic Protein Induces a Th17-Cell Response in Healthy Individuals and Enhances the Presentation of MBP85-99 in Patients with Multiple Sclerosis
10.1016/j.jaut.2023.103092 · ExternalCitation · doi-reference
Moving beyond Static Snapshots: Protein Dynamics and the Protein Data Bank
10.1016/j.jbc.2021.100749 · ExternalCitation · doi-reference
Association of the HLA-DRB1*15 Allele Group and the DRB1*1501 and DRB1*1503 Alleles with Multiple Sclerosis in White and Mulatto Samples from Brazil
10.1016/j.jneuroim.2007.06.009 · ExternalCitation · doi-reference
Epstein-Barr Virus and Mycobacterium Avium Subsp. Paratuberculosis Peptides Are Cross Recognized by Anti-Myelin Basic Protein Antibodies in Multiple Sclerosis Patients
10.1016/j.jneuroim.2014.02.013 · ExternalCitation · doi-reference
The Genetics of Multiple Sclerosis: From 0 to 200 in 50 Years
10.1016/j.tig.2017.09.004 · ExternalCitation · doi-reference
Multiple Sclerosis: Doubling down on MHC
10.1016/j.tig.2021.04.012 · ExternalCitation · doi-reference
Multiple Sclerosis
10.1016/s0140-6736(23)01473-3 · ExternalCitation · doi-reference
Multiple Roles of the Invariant Chain in MHC Class II Function
10.1016/s0167-4889(01)00166-5 · ExternalCitation · doi-reference
A Functional Hot Spot for Antigen Recognition in a Superagonist TCR/MHC Complex
10.1016/s1074-7613(00)80178-8 · ExternalCitation · doi-reference
Diagnosis of Multiple Sclerosis: 2017 Revisions of the McDonald Criteria
10.1016/s1474-4422(17)30470-2 · ExternalCitation · doi-reference
LiPyphilic: A Python Toolkit for the Analysis of Lipid Membrane Simulations
10.1021/acs.jctc.1c00447 · ExternalCitation · doi-reference
Gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS
10.1021/acs.jctc.1c00645 · ExternalCitation · doi-reference
On the Calculation of Acyl Chain Order Parameters from Lipid Simulations
10.1021/acs.jctc.7b00643 · ExternalCitation · doi-reference
Random Forests
10.1023/a:1010933404324 · ExternalCitation · doi-reference
Crystal Structure of a T Cell Receptor Bound to an Allogeneic MHC Molecule
10.1038/79728 · ExternalCitation · doi-reference
Dominant Protection from HLA-Linked Autoimmunity by Antigen-Specific Regulatory T Cells
10.1038/nature22329 · ExternalCitation · doi-reference
Crossreactivity of a Human Autoimmune TCR Is Dominated by a Single TCR Loop
10.1038/ncomms3623 · ExternalCitation · doi-reference
Unconventional Topology of Self Peptide-Major Histocompatibility Complex Binding by a Human Autoimmune T Cell Receptor
10.1038/ni1187 · ExternalCitation · doi-reference
CHARMM36m: An Improved Force Field for Folded and Intrinsically Disordered Proteins
10.1038/nmeth.4067 · ExternalCitation · doi-reference
Immunopathology of Multiple Sclerosis
10.1038/nri3871 · ExternalCitation · doi-reference
Cholesterol Accumulation on Dendritic Cells Reverses Chronic Hepatitis B Virus Infection-Induced Dysfunction
10.1038/s41423-022-00939-1 · ExternalCitation · doi-reference
A Naturally Selected Aβ T Cell Receptor Binds HLA-DQ2Molecules without Co-Contacting the Presented Peptide
10.1038/s41467-025-58690-w · ExternalCitation · doi-reference
Early Identification of Individuals at Risk for Multiple Sclerosis by Quantification of EBNA-1381-452-Specific Antibody Titers
10.1038/s41467-025-61751-9 · ExternalCitation · doi-reference
Epstein–Barr Virus as a Leading Cause of Multiple Sclerosis: Mechanisms and Implications
10.1038/s41582-023-00775-5 · ExternalCitation · doi-reference
T Cells Implicate Epstein–Barr Virus in Multiple Sclerosis Pathogenesis
10.1038/s41582-024-00939-x · ExternalCitation · doi-reference
MHC-II Dynamics Are Maintained in HLA-DR Allotypes to Ensure Catalyzed Peptide Exchange
10.1038/s41589-023-01316-3 · ExternalCitation · doi-reference
Epstein Barr Virus and Mycobacterium Avium Subsp. Paratuberculosis Peptides Are Recognized in Sera and Cerebrospinal Fluid of MS Patients
10.1038/srep22401 · ExternalCitation · doi-reference
Shedding Light on the Structural Properties of Lipid Bilayers Using Molecular Dynamics Simulation: A Review Study
10.1039/c8ra08441f · ExternalCitation · doi-reference
Mammalian Lipids: Structure, Synthesis and Function
10.1042/ebc20200067 · ExternalCitation · doi-reference
Polymorphic Transitions in Single Crystals: A New Molecular Dynamics Method
10.1063/1.328693 · ExternalCitation · doi-reference
A Computer Simulation Method for the Calculation of Equilibrium Constants for the Formation of Physical Clusters of Molecules: Application to Small Water Clusters
10.1063/1.442716 · ExternalCitation · doi-reference
Comparison of Simple Potential Functions for Simulating Liquid Water
10.1063/1.445869 · ExternalCitation · doi-reference
Molecular Dynamics with Coupling to an External Bath
10.1063/1.448118 · ExternalCitation · doi-reference
Perspective: Identification of Collective Variables and Metastable States of Protein Dynamics
10.1063/1.5049637 · ExternalCitation · doi-reference
Myelin Autoreactivity in Multiple Sclerosis: Recognition of Myelin Basic Protein in the Context of HLA-DR2 Products by T Lymphocytes of Multiple-Sclerosis Patients and Healthy Donors
10.1073/pnas.87.20.7968 · ExternalCitation · doi-reference
A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism
10.1074/jbc.m114.563502 · ExternalCitation · doi-reference
A Molecular Dynamics Method for Simulations in the Canonical Ensemble
10.1080/00268978400101201 · ExternalCitation · doi-reference
A Myelin Basic Protein Peptide Is Recognized by Cytotoxic T Cells in the Context of Four HLA-DR Types Associated with Multiple Sclerosis
10.1084/jem.173.1.19 · ExternalCitation · doi-reference
Crystal Structure of HLA-DR2 (DRA*0101, DRB1*1501) Complexed with a Peptide from Human Myelin Basic Protein
10.1084/jem.188.8.1511 · ExternalCitation · doi-reference
Unsupervised and Supervised AI on Molecular Dynamics Simulations Reveals Complex Characteristics of HLA-A2-Peptide Immunogenicity
10.1093/bib/bbad504 · ExternalCitation · doi-reference
AlphaFold Protein Structure Database: Massively Expanding the Structural Coverage of Protein-Sequence Space with High-Accuracy Models
10.1093/nar/gkab1061 · ExternalCitation · doi-reference
The IPD-IMGT/HLA Database
10.1093/nar/gkac1011 · ExternalCitation · doi-reference
UniProt: The Universal Protein Knowledgebase in 2023
10.1093/nar/gkac1052 · ExternalCitation · doi-reference
AlphaFold Protein Structure Database in 2024: Providing Structure Coverage for over 214 Million Protein Sequences
10.1093/nar/gkad1011 · ExternalCitation · doi-reference
OPM Database and PPM Web Server: Resources for Positioning of Proteins in Membranes
10.1093/nar/gkr703 · ExternalCitation · doi-reference
GalaxyPepDock: A Protein-Peptide Docking Tool Based on Interaction Similarity and Energy Optimization
10.1093/nar/gkv495 · ExternalCitation · doi-reference
Canonical Dynamics: Equilibrium Phase-Space Distributions
10.1103/physreva.31.1695 · ExternalCitation · doi-reference
Modeling of Loops in Protein Structures
10.1110/ps.9.9.1753 · ExternalCitation · doi-reference
Molecular Mimicry as an Inducing Trigger for CNS Autoimmune Demyelinating Disease
10.1111/j.1600-065x.2011.01076.x · ExternalCitation · doi-reference
The Role of Epstein–Barr Virus Molecular Mimicry in Various Autoimmune Diseases
10.1111/sji.70016 · ExternalCitation · doi-reference
Structural Basis of Plasticity in T Cell Receptor Recognition of a Self Peptide-MHC Antigen
10.1126/science.279.5354.1166 · ExternalCitation · doi-reference
Longitudinal Analysis Reveals High Prevalence of Epstein-Barr Virus Associated with Multiple Sclerosis
10.1126/science.abj8222 · ExternalCitation · doi-reference
How TCRs Bind MHCs, Peptides, and Coreceptors
10.1146/annurev.immunol.23.021704.115658 · ExternalCitation · doi-reference
The Involvement of HLA Class II Alleles in Multiple Sclerosis: A Systematic Review with Meta-Analysis
10.1155/2019/1409069 · ExternalCitation · doi-reference
Binding of Myelin Basic Protein Peptides to Human Histocompatibility Leukocyte Antigen Class II Molecules and Their Recognition by T Cells from Multiple Sclerosis Patients
10.1172/jci116242 · ExternalCitation · doi-reference
Epstein-Barr Virus Nuclear Antigen-1 B-Cell Epitopes in Multiple Sclerosis Twins
10.1177/1352458511410515 · ExternalCitation · doi-reference
Fine-Mapping the Genetic Association of the Major Histocompatibility Complex in Multiple Sclerosis: HLA and Non-HLA Effects
10.1371/journal.pgen.1003926 · ExternalCitation · doi-reference
Structural and Dynamical Insights on HLA-DR2 Complexes That Confer Susceptibility to Multiple Sclerosis in Sardinia: A Molecular Dynamics Simulation Study
10.1371/journal.pone.0059711 · ExternalCitation · doi-reference
Structural Study of Cell Attachment Peptide Derived from Laminin by Molecular Dynamics Simulation
10.1371/journal.pone.0149474 · ExternalCitation · doi-reference
The MM/PBSA and MM/GBSA Methods to Estimate Ligand-Binding Affinities
10.1517/17460441.2015.1032936 · ExternalCitation · doi-reference
Quantum Chemical Analysis of MHC-Peptide Interactions for Vaccine Design
10.2174/138955710791572488 · ExternalCitation · doi-reference
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
10.25080/majora-629e541a-00e · ExternalCitation · doi-reference
Protective Allele for Multiple Sclerosis HLA-DRB1*01:01 Provides Kinetic Discrimination of Myelin and Exogenous Antigenic Peptides
10.3389/fimmu.2019.03088 · ExternalCitation · doi-reference
Molecular Determinants Regulating the Plasticity of the MHC Class II Immunopeptidome
10.3389/fimmu.2022.878271 · ExternalCitation · doi-reference
Ensemble Molecular Mimicry Correlates with Antibody Cross-Reactivity in Proteome-Wide Studies
10.3389/fimmu.2026.1749369 · ExternalCitation · doi-reference
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