References

A review of wheat diseases—a field perspective

10.1111/mpp.12618 · 2018 · External reference

Decoding Rhizoctonia spp. in-depth genomic analysis, pathogenic mechanisms, and host interactions

10.1186/s42483-024-00297-y · 2025 · External reference

Fungicide resistance management: maximizing the effective life of plant protection products

10.1111/ppa.13467 · 2022 · External reference

Genetic control of compatibility in crosses between wheat and its wild or cultivated relatives

10.1111/pbi.13784 · 2022 · External reference

Streptomyces and their specialised metabolites for phytopathogen control—comparative in vitro and in planta metabolic approaches

10.3389/fpls.2023.1151912 · 2023 · External reference

Harnessing microbial volatile organic compounds for crop protection: scientific discovery, bridging ecological function and on-farm application

10.1111/1751-7915.70313 · 2026 · External reference

Biological control of plant diseases—what has been achieved and what is the direction?

10.1111/ppa.13555 · 2022 · External reference

Mode of action of microbial biological control agents against plant diseases: relevance beyond efficacy

10.3389/fpls.2019.00845 · 2019 · External reference

Does in vitro selection of biocontrol agents guarantee success in planta? A study case of wheat protection against Fusarium seedling blight by soil bacteria

10.1371/journal.pone.0225655 · 2019 · External reference

Soil microbial ecology through the lens of metatranscriptomics

10.1007/s42832-023-0217-z · 2023 · External reference

Exploring plant disease ecology through meta-omics: current insights and future perspectives

10.1007/978-981-95-2294-1_6 · 2025 · External reference

Defining the wheat microbiome: towards microbiome-facilitated crop production

10.1016/j.csbj.2021.01.045 · 2021 · External reference

Plant-driven assembly of disease-suppressive soil microbiomes

10.1146/annurev-phyto-021622-100127 · 2024 · External reference

Structure and functions of the bacterial microbiota of plants

10.1146/annurev-arplant-050312-120106 · 2013 · External reference

Influence of plant genotype and soil on the wheat rhizosphere microbiome: evidences for a core microbiome across eight African and European soils

10.1093/femsec/fiaa067 · 2020 · External reference

Changes in structure and assembly of a species-rich soil natural community with contrasting nutrient availability upon establishment of a plant-beneficial Pseudomonas in the wheat rhizosphere

10.1186/s40168-023-01660-5 · 2023 · External reference

Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil

10.1016/j.soilbio.2018.07.022 · 2018 · External reference

Endophytic microbes: biodiversity, plant growth-promoting mechanisms and potential applications for agricultural sustainability

10.1007/s10482-020-01429-y · 2020 · External reference

Endophytic fungi: biological control and induced resistance to phytopathogens and abiotic stresses

10.3390/pathogens10050570 · 2021 · External reference

Structure, variation, and assembly of the root-associated microbiomes of rice

10.1073/pnas.1414592112 · 2015 · External reference

Wheat dwarfing influences selection of the rhizosphere microbiome

10.1038/s41598-020-58402-y · 2020 · External reference

The plant endosphere world—bacterial life within plants

10.1111/1462-2920.15240 · 2021 · External reference

Eight years in the soil: temporal dynamics of wheat-associated bacterial communities under dryland and irrigated conditions

10.1094/pbiomes-02-24-0028-r · 2025 · External reference

Microbial life in the phyllosphere

10.1038/nrmicro2910 · 2012 · External reference

Analysis of stored wheat grain-associated microbiota reveals biocontrol activity among microorganisms against mycotoxigenic fungi

10.3390/jof7090781 · 2021 · External reference

From seed to seed: the role of microbial inheritance in the assembly of the plant microbiome

10.1016/j.tim.2022.10.009 · 2023 · External reference

The contribution of beneficial wheat seed fungal communities beyond disease-causing fungi: advancing heritable mycobiome-based plant breeding

10.1111/1758-2229.70004 · 2024 · External reference

The microbial community composition changes rapidly in the early stages of decomposition of wheat residue

10.1016/j.soilbio.2010.11.015 · 2011 · External reference

The role of tillage practices in wheat straw decomposition and shaping the associated microbial communities in Endocalcaric–Epigleyic Cambisol soil

10.1007/s00374-024-01879-w · 2025 · External reference

Delving into the soil and phytomicrobiome for disease suppression: a case study for the control of Fusarium head blight of cereals

10.1016/j.scitotenv.2025.178655 · 2025 · External reference

Microbiomes and pathogen survival in crop residues, an ecotone between plant and soil

10.1094/pbiomes-02-19-0010-rvw · 2019 · External reference

Biocontrol of cereal crop diseases using streptomycetes

10.3390/pathogens8020078 · 2019 · External reference

Emerging microbial biocontrol strategies for plant pathogens

10.1016/j.plantsci.2017.11.012 · 2018 · External reference

Mechanistic insights for microbiome application in plant disease resistance

10.1111/mpp.70233 · 2026 · External reference

Biocontrol of plant diseases by Bacillus spp

10.1016/j.pmpp.2023.102048 · 2023 · External reference

Trichoderma as biological control agent: scope and prospects to improve efficacy

10.1007/s11274-021-03058-7 · 2021 · External reference

Sustainable agriculture: rare-actinomycetes to the rescue

10.3390/agronomy13030666 · 2023 · External reference

Sustainable microbial solutions for managing fungal threats in wheat: progress and future directions

10.1007/s11274-025-04286-x · 2025 · External reference

APD6: the antimicrobial peptide database is expanded to promote research and development by deploying an unprecedented information pipeline

10.1093/nar/gkaf860 · 2026 · External reference

Peptides in plant–microbe interactions: functional diversity and pharmacological applications

10.1016/j.tcsw.2025.100145 · 2025 · External reference

Plenty is no plague: Streptomyces symbiosis with crops

10.1016/j.tplants.2016.10.008 · 2017 · External reference

Antifungal peptides produced by actinomycetes and their biological activities against plant diseases

10.1038/s41429-020-0287-4 · 2020 · External reference

Antifungal and insecticidal potential of chitinases: a credible choice for the eco-friendly farming

10.1016/j.bcab.2019.101289 · 2019 · External reference

Mycoparasitism as a mechanism of Trichoderma-mediated suppression of plant diseases

10.1016/j.fbr.2021.11.004 · 2022 · External reference

Biocontrol efficacy of Trichoderma isolates for tan spot of wheat in Argentina

10.1016/s0261-2194(03)00143-1 · 2003 · External reference

Overexpression of chitinase in the endophyte Phomopsis liquidambaris enhances wheat resistance to Fusarium graminearum

10.1016/j.fgb.2021.103650 · 2022 · External reference

Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition

10.7554/elife.71900 · 2021 · External reference

Accumulation of Pseudomonas-derived 2,4-diacetylphloroglucinol on wheat seedling roots is influenced by host cultivar

10.1016/j.biocontrol.2008.03.013 · 2008 · External reference

Streptomyces endophytes promote host health and enhance growth across plant species

10.1128/aem.01053-20 · 2020 · External reference

Effects of validamycin in controlling Fusarium head blight caused by Fusarium graminearum: inhibition of DON biosynthesis and induction of host resistance

10.1016/j.pestbp.2018.11.012 · 2019 · External reference

Wheat microbiome bacteria can reduce virulence of a plant pathogenic fungus by altering histone acetylation

10.1038/s41467-018-05683-7 · 2018 · External reference

Phenazine-1-carboxamide from Streptomyces suppresses Phytophthora nicotianae via CDC48-targeted mitochondrial disruption

10.1111/pce.70383 · 2026 · External reference

A mass spectrometry-based strategy for investigating volatile molecular interactions in microbial consortia: unveiling a Fusarium-specific induction of an antifungal compound

10.3389/fmicb.2024.1417919 · 2025 · External reference

NRPS gene dynamics in the wheat rhizoplane show increased proportion of viscosin NRPS genes of importance for root colonization during drought

10.1128/msphere.00852-24 · 2025 · External reference

Seasonal activities of the phyllosphere microbiome of perennial crops

10.1038/s41467-023-36515-y · 2023 · External reference

Diversity and distribution of biosynthetic gene clusters in agricultural soil microbiomes

10.1128/msystems.01263-23 · 2024 · External reference

Crop root bacterial and viral genomes reveal unexplored species and microbiome patterns

10.1016/j.cell.2025.02.013 · 2025 · External reference

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

10.1126/science.aaw9285 · 2019 · External reference

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

10.1038/s41564-018-0200-0 · 2018 · External reference

Predicting competition and substrate preferences for targeted microbiome alteration

10.1016/j.cell.2026.03.036 · 2026 · External reference

Carbon substrates utilization determine antagonistic fungal–fungal interactions among root-associated fungi

10.3389/fmicb.2025.1645107 · 2025 · External reference

Meeting the demand for crop production: the challenge of yield decline in crops grown in short rotations

10.1111/j.1469-185x.2011.00184.x · 2012 · External reference

Role of 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp. in the defense of plant roots

10.1055/s-2006-924473 · 2007 · External reference

Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness

10.1186/s40793-023-00529-2 · 2023 · External reference

Comparative metatranscriptomics of wheat rhizosphere microbiomes in disease suppressive and non-suppressive soils for Rhizoctonia solani AG8

10.3389/fmicb.2018.00859 · 2018 · External reference

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

10.1126/science.1203980 · 2011 · External reference

Plant pathogen effector proteins as manipulators of host microbiomes?

10.1111/mpp.12628 · 2018 · External reference

A highly polymorphic effector protein promotes fungal virulence through suppression of plant-associated Actinobacteria

10.1111/nph.18576 · 2023 · External reference

Microbiome manipulation by a soil-borne fungal plant pathogen using effector proteins

10.1038/s41477-020-00799-5 · 2020 · External reference

Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici

10.1111/nph.14786 · 2018 · External reference

A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition

10.1038/s41467-020-15633-x · 2020 · External reference

Metagenomic next-generation sequencing (mNGS) data reveal the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

10.1094/pbiomes-02-22-0008-fi · 2023 · External reference

Co-inoculation of Trichoderma gamsii A5MH and Trichoderma harzianum Tr906 in wheat suppresses in planta abundance of the crown rot pathogen Fusarium pseudograminearum and impacts the rhizosphere soil fungal microbiome

10.1016/j.biocontrol.2021.104809 · 2022 · External reference

Decoding wheat endosphere–rhizosphere microbiomes in Rhizoctonia solani–infested soils challenged by Streptomyces biocontrol agents

10.3389/fpls.2019.01038 · 2019 · External reference

The wheat microbiome under four management strategies, and potential for endophytes in disease protection

10.1094/pbiomes-05-17-0023-r · 2017 · External reference

Fungal effectors and plant susceptibility

10.1146/annurev-arplant-043014-114623 · 2015 · External reference

Crop rotation and fungicides impact microbial biomass, diversity and enzyme activities in the wheat rhizosphere

10.3389/fagro.2024.1455448 · 2024 · External reference

The microbiome of continuous wheat rotations: minor shifts in bacterial and archaeal communities but a source for functionally active plant-beneficial bacteria

10.1094/pbiomes-05-24-0054-r · 2025 · External reference

Mycoviruses and their ecological impacts on fungi

10.1016/j.virol.2025.110562 · 2025 · External reference

Fusarium Graminearum virus-1 strain FgV1-SD4 infection eliminates mycotoxin deoxynivalenol synthesis by Fusarium graminearum in FHB

10.3390/microorganisms10081484 · 2022 · External reference

Meta-analysis approach to assess effect of tillage on microbial biomass and enzyme activities

10.1016/j.soilbio.2016.03.011 · 2016 · External reference

Harnessing the benefits of soil biology in conservation agriculture

2019 · External reference

Unraveling microbiomes and functions associated with strategic tillage, stubble, and fertilizer management

10.1016/j.agee.2021.107686 · 2022 · External reference

Impact of agricultural inputs on soil organisms—a review

10.1071/sr05125 · 2006 · External reference

Structural effect of pesticides on rhizosphere microbiome

10.1111/1462-2920.70172 · 2025 · External reference

Pesticide residues alter taxonomic and functional biodiversity in soils

10.1038/s41586-025-09991-z · 2026 · External reference

Plant-soil-microbiome interactions: mechanisms, advances, and challenges in sustainable agriculture and healthy agroecosystems

10.3389/fmicb.2026.1762743 · 2026 · External reference

Soil microbial community fragmentation reveals indirect effects of fungicide exposure mediated by biotic interactions between microorganisms

10.1016/j.jhazmat.2024.134231 · 2024 · External reference

Microbiome modulation for sustainable crop production and climate resilience

10.1093/sumbio/qvag032 · 2026 · External reference

Biotic stress-induced changes in root exudation confer plant stress tolerance by altering rhizospheric microbial community

10.3389/fpls.2023.1132824 · 2023 · External reference

Wheat root exudates modulate rhizosphere microbiome assembly and Rhizoctonia solani AG8 DNA abundance in two contrasting soils

10.1016/j.rhisph.2026.101450 · 2026 · External reference

Developing actinobacterial endophytes as biocontrol products for Fusarium pseudograminearum in wheat

10.3389/fbioe.2021.691770 · 2021 · External reference

Multi-omic investigation identifies key antifungal biochemistry during fermentation of a Streptomyces biological control agent

10.1016/j.micres.2024.128032 · 2025 · External reference

A foliar spray made from two Streptomyces spp suppresses Sclerotinia stem rot on canola and inhibits other fungal pathogens

10.1016/j.biocontrol.2025.105793 · 2025 · External reference

Genomic and untargeted metabolomic analysis of secondary metabolites in the Streptomyces griseoaurantiacus strain MH191 shows media-based dependency for the production of bioactive compounds with potential antifungal activity

10.1021/acs.jafc.4c04989 · 2024 · External reference

Bioprotectants for the suppression of Ascochyta rabiei infection and inoculum production on chickpea (Cicer arietinum)

10.1016/j.biocontrol.2025.105950 · 2026 · External reference

A plant stress-responsive bioreporter coupled with transcriptomic analysis allows rapid screening for biocontrols of necrotrophic fungal pathogens

10.3389/fmolb.2021.708530 · 2021 · External reference

Actinobacteria warfare against the plant pathogen Sclerotinia sclerotiorum: 2,4,6-trimethylpyridine identified as a bacterial derived volatile with antifungal activity

10.1111/1751-7915.70082 · 2025 · External reference