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References from Steering sequence generation in protein language models through Iterative Lookback Monte Carlo Sampling. Local targets link to admitted publications; unresolved targets remain external evidence.
Accurate structure prediction of biomolecular interactions with alphafold 3
10.1038/s41586-024-07487-w · 2024 · External reference
Scaling unlocks broader generation and deeper functional understanding of proteins
10.52202/085713-1536 · 2025 · External reference
Functional alignment of protein language models via reinforcement learning
10.1101/2025.05.02.651993 · 2025 · External reference
Integrating experimental feedback improves generative models for biological sequences
10.1093/nar/gkaf832 · 2025 · External reference
Controllable protein design via autoregressive direct coupling analysis conditioned on principal components
10.1371/journal.pcbi.1013996 · 2026 · External reference
Prottrans: toward understanding the language of life through self-supervised learning
10.1109/tpami.2021.3095381 · 2022 · External reference
A generative language model decodes contextual constraints on codon choice for mRNA design
10.1101/2025.05.13.653614 · 2025 · External reference
Designing molecular RNA switches with restricted boltzmann machines
10.1038/s41467-025-66265-y · 2025 · External reference
Understanding temperature tuning in energy-based models
2025 · External reference
Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria
10.1006/jmbi.2001.4718 · 2001 · External reference
Biological insights from structures of two-component proteins
10.1146/annurev.micro.091208.073214 · 2009 · External reference
Rewarding the unlikely: lifting GRPO beyond distribution sharpening
10.18653/v1/2025.emnlp-main.1298 · 2025 · External reference
Efficient evolution of human antibodies from general protein language models
10.1038/s41587-023-01763-2 · 2024 · External reference
Diversity and evenness: a unifying notation and its consequences
10.2307/1934352 · 1973 · External reference
The curious case of neural text degeneration
2019 · External reference
Reasoning with sampling: your base model is smarter than you think
2025 · External reference
Koconovel: annotated dataset of character coreference in korean novels
2024 · External reference
Exploring the space of self-reproducing ribozymes using generative models
10.1038/s41467-025-63151-5 · 2025 · External reference
Evolutionary-scale prediction of atomic-level protein structure with a language model
10.1126/science.ade2574 · 2023 · External reference
Large language models generate functional protein sequences across diverse families
10.1038/s41587-022-01618-2 · 2023 · External reference
Pfam: the protein families database in 2021
10.1093/nar/gkaa913 · 2021 · External reference
Infernal 1.1: 100-fold faster RNA homology searches
10.1093/bioinformatics/btt509 · 2013 · External reference
Progen2: exploring the boundaries of protein language models
10.1016/j.cels.2023.10.002 · 2023 · External reference
Temstapro: protein thermostability prediction using sequence representations from protein language models
10.1093/bioinformatics/btae157 · 2024 · External reference
Language models are unsupervised multitask learners
2019 · External reference
An evolution-based model for designing chorismate mutase enzymes
10.1126/science.aba3304 · 2020 · External reference
Outcome-based exploration for LLM reasoning
2025 · External reference
Guiding generative models for protein design: prompting, steering and aligning
2025 · External reference
Uniprot: the universal protein knowledgebase in 2025
10.1093/nar/gkae1010 · 2025 · External reference
Fudge: controlled text generation with future discriminators
10.18653/v1/2021.naacl-main.276 · 2021 · External reference
Protein and DNA sequence determinants of thermophilic adaptation
10.1371/journal.pcbi.0030005 · 2007 · External reference