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References from Coolsecture: an easy-to-use and improved framework for cross-species Hi-C contact map comparison. Local targets link to admitted publications; unresolved targets remain external evidence.
How Hi-C ignited the era of 3D genome biology
10.1038/s41576-023-00583-z · 2023 · External reference
Co-opted transposons help perpetuate conserved higher-order chromosomal structures
10.1186/s13059-019-1916-8 · 2020 · External reference
Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments
10.1016/j.cels.2016.07.002 · 2016 · External reference
A TAD skeptic: is 3D genome topology conserved?
10.1016/j.tig.2020.10.009 · 2021 · External reference
Evolutionary stability of topologically associating domains is associated with conserved gene regulation
10.1186/s12915-018-0556-x · 2018 · External reference
Comparative 3D genome architecture in vertebrates
10.1186/s12915-022-01301-7 · 2022 · External reference
New strategies to improve minimap2 alignment accuracy
10.1093/bioinformatics/btab705 · 2021 · External reference
MUMmer4: a fast and versatile genome alignment system
10.1371/journal.pcbi.1005944 · 2018 · External reference
InterSecture—a computational tool for interspecies comparison of genome architecture
10.1093/bioinformatics/btz415 · 2019 · External reference
The relationship between genome structure and function
10.1038/s41576-020-00303-x · 2021 · External reference
HiC-pro: an optimized and flexible pipeline for Hi-C data processing
10.1186/s13059-015-0831-x · 2015 · External reference
The role of chromosome domains in shaping the functional genome
10.1016/j.cell.2015.02.040 · 2015 · External reference
Altered chromatin architecture and gene expression during polyploidization and domestication of soybean
10.1093/plcell/koab081 · 2021 · External reference
Evolutionary dynamics of 3D genome architecture following polyploidization in cotton
10.1038/s41477-017-0096-3 · 2018 · External reference
Three-dimensional genome structures of single mammalian sperm
10.1038/s41467-025-59055-z · 2025 · External reference
An integrative 3D-genome database for plants
10.1016/j.xplc.2025.101346 · 2025 · External reference
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
10.1101/gr.220640.117 · 2017 · External reference
