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References from Regulatory-prior-guided attention preserves biological structure during unpaired single-cell RNA–ATAC integration. Local targets link to admitted publications; unresolved targets remain external evidence.
Scenic: single-cell regulatory network inference and clustering
10.1038/nmeth.4463 · 2017 · External reference
MultiVI: deep generative model for the integration of multimodal data
10.1038/s41592-023-01909-9 · 2023 · External reference
Metagenes and molecular pattern discovery using matrix factorization
10.1073/pnas.0308531101 · 2004 · External reference
A unified computational framework for single-cell data integration with optimal transport
10.1038/s41467-022-35094-8 · 2022 · External reference
10.1038/s41592-024-02201-0
10.1038/s41592-024-02201-0 · External reference
Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
10.1038/s41587-022-01284-4 · 2022 · External reference
Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
10.1126/science.aab1601 · 2015 · External reference
Unresolved reference
2015 · External reference
Cobolt: integrative analysis of multimodal single-cell sequencing data
10.1186/s13059-021-02556-z · 2021 · External reference
Graph peak caller: calling chip-seq peaks on graph-based reference genomes
10.1371/journal.pcbi.1006731 · 2019 · External reference
Multimap: dimensionality reduction and integration of multimodal data
10.1186/s13059-021-02565-y · 2021 · External reference
Natural language processing (nlp) in management research: a literature review
10.1080/23270012.2020.1756939 · 2020 · External reference
Benchmarking atlas-level data integration in single-cell genomics
10.1038/s41592-021-01336-8 · 2022 · External reference
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
10.1016/j.molcel.2018.06.044 · 2018 · External reference
The effects of anti-cd3/cd28 coated beads and il-2 on expanded t cell for immunotherapy
10.17219/acem/35771 · 2016 · External reference
Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells
10.1038/s41587-021-00927-2 · 2021 · External reference
An expanded registry of candidate cis-regulatory elements
10.1038/s41586-025-09909-9 · 2026 · External reference
Single-cell chromatin state analysis with signac
10.1038/s41592-021-01282-5 · 2021 · External reference
Single-cell multi-omic integration compares and contrasts features of brain cell identity
10.1016/j.cell.2019.05.006 · 2019 · External reference
Scalex: online single-cell data integration through projecting heterogeneous datasets into a common latent space
10.1038/s41467-022-33758-z · 2022 · External reference