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References from Variation in microbial and plant associations across wild bee families, functional groups, and urban environments. Local targets link to admitted publications; unresolved targets remain external evidence.
UNITE QIIME release for Fungi 2
10.15156/bio/2938080 · 2023 · External reference
Fungal communities decline with urbanization—more in air than in soil
10.1038/s41396-020-0732-1 · 2020 · External reference
Basic local alignment search tool
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
Land-use change alters specialist bee diet and drives body size declines
10.1007/s10980-024-01893-1 · 2024 · External reference
Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila)
2024 · External reference
Supporting bees in cities: how bees are influenced by local and landscape features
10.3390/insects12020128 · 2021 · External reference
Bee-plant interaction and community response along an urbanization gradient
10.1093/jue/juad006 · 2023 · External reference
Fitting linear mixed-effects models using lme4
10.18637/jss.v067.i01 · 2015 · External reference
Unraveling the effect of soil moisture on microbial diversity and enzymatic activity in agricultural soils
10.3390/microorganisms13061245 · 2025 · External reference
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
10.1038/s41587-019-02099 · 2019 · External reference
A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont
10.1186/s42523-023-00248-6 · 2023 · External reference
Functional traits of wild bees in response to urbanization
10.1007/s10841-023-00528-1 · 2024 · External reference
Testing the efficacy of DNA barcodes for identifying the vascular plants of Canada
10.1371/journal.pone.0169515 · 2017 · External reference
VASCAN, the database of vascular plants of Canada
2010 · External reference
Floral cues of non-host plants attract oligoletic Chelostoma rapunculi bees
10.3389/fevo.2021.682960 · 2021 · External reference
Metagenomic analysis of the honey bee queen microbiome reveals low bacterial diversity and Caudoviricetes phages
10.1128/msystems.01182-23 · 2024 · External reference
DADA2: high-resolution sample inference from Illumina amplicon data
10.1038/nmeth.3869 · 2016 · External reference
The evolution of floral sonication, a pollen foraging behavior used by bees (Anthophila)
10.1111/evo.13446 · 2018 · External reference
Integrative population genetics and metagenomics reveals urbanization increases pathogen loads and decreases connectivity in a wild bee
10.1111/gcb.16757 · 2023 · External reference
Acetic acid bacteria, newly emerging symbionts of insects
10.1128/aem.01336-10 · 2010 · External reference
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
10.1101/221499 · 2017 · External reference
agricolae: statistical procedures for agricultural research
2023 · External reference
Bacterial communities of indoor surface of stingless bee nests
10.1371/journal.pone.0252933 · 2021 · External reference
Diverse diets with consistent core microbiome in wild bee pollen provisions
10.3390/insects11080499 · 2020 · External reference
Microbes make the meal: oligolectic bees require microbes within their host pollen to thrive
10.1111/een.12926 · 2020 · External reference
a detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data
10.1186/s12863-022-01067-5 · 2022 · External reference
The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions
10.1128/mbio.02164-15 · 2016 · External reference
The gut microbiome of solitary bees is mainly affected by pathogen assemblage and partially by land use
10.1186/s40793-023-00494-w · 2023 · External reference
Urbanisation reduced body size but potentially improved flight performance in bees and wasps
10.1016/j.baae.2023.11.010 · 2024 · External reference
Does urbanization favour exotic bee species? Implications for the conservation of native bees in cities
10.1098/rsbl.2019.0574 · 2019 · External reference
Extensive screen for bacterial endosymbionts reveals taxon-specific distribution patterns among bees (Hymenoptera, Anthophila)
10.1093/femsec/fiv047 · 2015 · External reference
Why 70/30 or 80/20 relation between training and testing sets: a pedagogical explanation
2018 · External reference
A checklist of the bees (Hymenoptera: apoidea) of Manitoba, Canada
10.4039/tce.2022.45 · 2023 · External reference
25 years of serving the community with ribosomal RNA gene reference databases and tools
10.1016/j.jbiotec.2017.06.1198 · 2017 · External reference
Hunting for healthy microbiomes: determining the core microbiomes of Ceratina, Megalopta, and Apis bees and how they associate with microbes in bee collected pollen
10.1007/s10592-017-0937-7 · 2017 · External reference
Bee foraging ranges and their relationship to body size
10.1007/s00442-007-0752-9 · 2007 · External reference
Extensive loss of forage diversity in social bees owing to flower constancy in simulated environments
10.1098/rspb.2024.1036 · 2024 · External reference
PAST: paleontological statistics software package for education and data analysis
2001 · External reference
Thermal niches of specialized gut symbionts: the case of social bees
10.1098/rspb.2020.1480 · 2021 · External reference
The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms
10.1007/s00248-023-02304-9 · 2023 · External reference
Molecular phylogeny and evolution of the maple powdery mildew (Sawadaea, Erysiphaceae) inferred from nuclear rDNA sequences
10.1017/s0953756205003527 · 2005 · External reference
Bumble bee gut microbial community structure differs between species and commercial suppliers, but metabolic potential remains largely consistent
10.1128/aem.02036-24 · 2025 · External reference
Changes in the bacteriome of honey bees associated with the parasite Varroa destructor, and pathogens Nosema and Lotmaria passim
10.1007/s00248-016-0869-7 · 2017 · External reference
Ectomycorrhizal fungal communities in urban parks are similar to those in natural forests but shaped by vegetation and park age
10.1128/aem.01797-17 · 2017 · External reference
Investigating bee dietary preferences along a gradient of floral resources: how does resource use align with resource availability?
10.1111/1744-7917.12785 · 2021 · External reference
Overview of bee pollination and its economic value for crop production
10.3390/insects12080688 · 2021 · External reference
Dynamic microbiome evolution in social bees
10.1126/sciadv.1600513 · 2017 · External reference
Gut microbial communities of social bees
10.1038/nrmicro.2016.43 · 2016 · External reference
Building predictive models in R using the caret package
10.18637/jss.v028.i05 · 2008 · External reference
Classification and regression by randomForest
2002 · External reference
Building height matters: nesting activity of bees and wasps on vegetated roofs
10.1080/15659801.2015.1052635 · 2015 · External reference
CUTADAPT removes adapter sequences from high-throughput sequencing reads
10.14806/ej.17.1.200 · 2011 · External reference
Direct and indirect effects of land use on floral resources and flower-visiting insects across an urban landscape
10.1111/j.1600-0706.2012.20229.x · 2012 · External reference
Characterization of pollen and bacterial community composition in brood provisions of a small carpenter bee
10.1111/mec.13608 · 2016 · External reference
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
10.1371/journal.pone.0061217 · 2013 · External reference
Agricultural intensification shapes community composition and parasite prevalence of native but not introduced bumble bees
10.1016/j.baae.2026.06.008 · 2026 · External reference
Flowers with poricidal anthers and their complex interaction networks—disentangling legitimate pollinators and illegitimate visitors
10.1111/1365-2435.13204 · 2018 · External reference
Major benefits of guarding behavior in subsocial bees: implications for social evolution
10.1002/ece3.2387 · 2016 · External reference
Bees of the eastern United States V1. North Carolina Agricultural Experiment Station Technical
1960 · External reference
Bees of the eastern United States V2. North Carolina Agricultural Experiment Station Technical
1962 · External reference
The honeybee microbiota and its impact on health and disease
10.1038/s41579-023-00990-3 · 2024 · External reference
Divergent microbiome signatures between managed and wild honey bee (Apis mellifera) populations in South Texas
10.1128/spectrum.03394-25 · 2026 · External reference
NatureServe network biodiversity location data accessed through NatureServe Explorer [web application]
2025 · External reference
The effects of urban land use gradients on wild bee microbiomes
10.3389/fmicb.2022.992660 · 2022 · External reference
Microbiome and floral associations of a wild bee using biodiversity survey collections
10.1111/1462-2920.16657 · 2024 · External reference
FSA: simple fisheries stock assessment methods
2023 · External reference
Package ‘vegan’. Community Ecology Package version 2.5-7
2020 · External reference
Toward a functional trait approach to bee ecology
10.1002/ece3.70465 · 2024 · External reference
randomForestExplainer: explaining and visualizing random forests in terms of variable importance
2020 · External reference
Native and introduced pollinators vary in their seasonal floral resource visitation and selection between native and exotic plant species
10.1111/1365-2664.14416 · 2023 · External reference
Direct and indirect effects of land use on microbiomes of trap-nesting solitary bee larvae and nests
10.3389/fmicb.2024.1513096 · 2025 · External reference
Unresolved reference
2024 · External reference
Study on the dynamic distribution of spores of powdery mildew pathogen in wheat by rotor airflow of plant protection UAV
10.1371/journal.pone.0288248 · 2023 · External reference
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
10.1093/nar/gks1219 · 2013 · External reference
Specialist bee species are larger and less phylogenetically distinct than generalists in tropical plant-bee interaction networks
10.3389/fevo.2021.699649 · 2021 · External reference
R: a language and environment for statistical computing
2021 · External reference
Bees just wanna have fungi: a review of bee associations with nonpathogenic fungi
10.1093/femsec/fiad077 · 2023 · External reference
The E-utilities in-Depth: parameters, Syntax and More
2009 · External reference
Microbial communities of wild bees and comparative phylogenetics of key bacterial taxa across the bee tree of life
10.1098/rspb.2025.1823 · 2025 · External reference
Bee phenology is predicted by climatic variation and functional traits
10.1111/ele.13583 · 2020 · External reference
Solitary bees host more bacteria and fungi on their cuticle than social bees
10.3390/microorganisms11112780 · 2023 · External reference
Bee-associated beneficial microbes—importance for bees and for humans
10.3390/insects15060430 · 2024 · External reference
The plant microbiome
10.1186/gb-2013-14-6-209 · 2013 · External reference
The effects of urbanization on bee communities depends on floral resource availability and bee functional traits
10.1371/journal.pone.0225852 · 2019 · External reference
Microbiota dysbiosis in honeybee (Apis mellifera L.) larvae infected with brood diseases and foraging bees exposed to agrochemicals
10.1098/rsos.201805 · 2021 · External reference
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
10.1093/nar/gkt1209 · 2014 · External reference
Diversity and functional analysis of Chinese bumblebee gut microbiota reveal the metabolic niche and antibiotic resistance variation of Gilliamella
10.1111/1744-7917.12770 · 2021 · External reference