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References from Molecular mechanism of postharvest quality deterioration in Stropharia rugosoannulata based on transcriptomics and metabolomics. Local targets link to admitted publications; unresolved targets remain external evidence.
Exogenous adenosine triphosphate application retards cap browning in Agaricus bisporus during low temperature storage
10.1016/j.foodchem.2019.05.002 · 2019 · External reference
Enhancing stability of essential oils by microencapsulation for preservation of button mushroom during postharvest
10.1002/fsn3.129 · 2014 · External reference
Metabolomics and transcriptomics unravel the mechanism of browning resistance in Agaricus bisporus
10.1371/journal.pone.0255765 · 2022 · External reference
fastp 1.0: an ultra-fast all-round tool for FASTQ data quality control and preprocessing
10.1002/imt2.70078 · 2025 · External reference
Combined proteomic and metabolomic analyses reveal the comprehensive regulation of Stropharia rugosoannulata mycelia exposed to cadmium Stress
10.3390/jof10020134 · 2024 · External reference
Integrated physiologic and proteomic analysis of Stropharia rugosoannulata mycelia in response to Cd stress
10.1016/j.jhazmat.2022.129877 · 2023 · External reference
Metabolomics reveals dopa melanin involved in the enzymatic browning of the yellow cultivars of East Asian golden needle mushroom (Flammulina filiformis)
10.1016/j.foodchem.2021.131295 · 2022 · External reference
Effects of wine-cap Stropharia cultivation on soil nutrients and bacterial communities in forestlands of northern China
10.7717/peerj.5741 · 2018 · External reference
Genome sequencing highlights the plant cell wall degrading capacity of edible mushroom Stropharia rugosoannulata
10.1007/s12275-022-00003-7 · 2023 · External reference
Transcriptome analysis of genes associated with autolysis of Coprinus comatus
10.1038/s41598-022-06103-z · 2022 · External reference
Transcriptome and differentially expressed gene profiles in mycelium, primordium and fruiting body development in Stropharia rugosoannulata
10.3390/genes13061080 · 2022 · External reference
Transcriptomic analysis of Stropharia rugosoannulata reveals carbohydrate metabolism and cold resistance mechanisms under low-temperature stress
10.1186/s13568-022-01400-2 · 2022 · External reference
The rise of Stropharia rugosoannulata industry in China: current state and prospects
10.1007/s00253-025-13576-1 · 2025 · External reference
Lentinan degradation in the Lentinula edodes fruiting body during postharvest preservation is reduced by downregulation of the exo-β-1,3-glucanase EXG2
10.1021/jf501578w · 2014 · External reference
Regulation of respiratory pathway and electron transport chain in relation to senescence of postharvest white mushroom (Agaricus bisporus) under high O2/CO2 controlled atmospheres
10.1021/acs.jafc.6b05738 · 2017 · External reference
Melatonin retards senescence via regulation of the electron leakage of postharvest white mushroom (Agaricus bisporus)
10.1016/j.foodchem.2020.127833 · 2021 · External reference
Effects of a high O2 dynamic-controlled atmosphere technology on the browning of postharvest white mushroom (Agaricus bisporus) in relation to energy metabolism
10.1177/1082013217695146 · 2017 · External reference
Whole Genome Sequence of an Edible Mushroom Stropharia rugosoannulata (Daqiugaigu)
10.3390/jof8020099 · 2022 · External reference
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2014 · External reference
Coating shiitake mushrooms (Lentinus edodes) with a polysaccharide from Oudemansiella radicata improves product quality and flavor during postharvest storage
10.1016/j.foodchem.2021.129357 · 2021 · External reference
Isolation, characterization and antioxidant of polysaccharides from Stropharia rugosoannulata
10.1016/j.ijbiomac.2019.11.045 · 2020 · External reference
Widely targeted metabolomics analysis of the changes to key non-volatile taste components in Stropharia rugosoannulata under different drying methods
10.3389/fnut.2022.884400 · 2022 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Analysis of gene regulatory network and transcription factors in different tissues of the Stropharia rugosoannulata fruiting body
10.3390/jof11020123 · 2025 · External reference
Molecular mechanisms and horticultural implications of temperature-induced color variation in Stropharia rugosoannulata mushrooms
10.1016/j.fochms.2025.100276 · 2025 · External reference
Postharvest application of methyl jasmonate for improving quality retention of Agaricus bisporus fruit bodies
10.1021/jf3006454 · 2012 · External reference
Study of thermotolerant mechanism of Stropharia rugosoannulata under high temperature stress based on the transcriptome sequencing
10.47371/mycosci.2020.11.006 · 2021 · External reference
Characterization of the post-harvest changes in gene transcription in the gill of the Lentinula edodes fruiting body
10.1007/s00294-009-0255-9 · 2009 · External reference
Lentinula edodes genome survey and postharvest transcriptome analysis
10.1128/aem.02990-16 · 2017 · External reference
Molecular insights into temperature-driven color variation in Stropharia rugosoannulata mushrooms
10.1016/j.ygeno.2025.111044 · 2025 · External reference
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
10.1093/bioinformatics/btn013 · 2008 · External reference
Metabolomic and transcriptomic analyses revealed lipid differentiation mechanisms in Agaricus bisporus at ambient conditions
10.3390/jof10080533 · 2024 · External reference
From white to reddish-brown: the anthocyanin journey in Stropharia rugosoannulata driven by auxin and genetic regulators
10.1021/acs.jafc.4c10753 · 2025 · External reference
Transcriptome analysis explored the differential genes’ expression during the development of the Stropharia rugosoannulata fruiting body
10.3389/fgene.2022.924050 · 2022 · External reference
Chemical composition, antibacterial test, and antioxidant activity of essential oils from fresh and dried Stropharia rugosoannulata
10.1155/2023/6965755 · 2023 · External reference
Quantitative transcriptomic and metabolomic analyses reveal the changes in Tricholoma matsutake fruiting bodies during cold storage
10.1016/j.foodchem.2022.132292 · 2022 · External reference
Integrative analysis of transcriptome and metabolome sheds light on flavonoid biosynthesis in the fruiting body of Stropharia rugosoannulata
10.3390/jof10040254 · 2024 · External reference
Comparative transcriptome and proteome provide new insights into the regulatory mechanisms of the postharvest deterioration of Pleurotus tuoliensis fruitbodies during storage
10.1016/j.foodres.2021.110540 · 2021 · External reference
Using clusterProfiler to characterize multiomics data
10.1038/s41596-024-01020-z · 2024 · External reference
Variation in cell membrane integrity and enzyme activity of the button mushroom (Agaricus bisporus) during storage and transportation
10.1007/s13197-020-04674-1 · 2021 · External reference
Transcriptome analysis reveals critical genes involved in the response of Stropharia rugosoannulata to high temperature and drought stress
10.3390/cimb47100835 · 2025 · External reference
Genomic analysis of Stropharia rugosoannulata reveals its nutritional strategy and application potential in bioremediation
10.3390/jof8020162 · 2022 · External reference
Proteomics reveals the mechanism underlying the autolysis of postharvest Coprinus comatus fruiting bodies
10.1021/acs.jafc.1c07007 · 2022 · External reference
TMT-MS/MS proteomic analysis of the carbohydrate-active enzymes in the fruiting body of Pleurotus tuoliensis during storage
10.1002/jsfa.10803 · 2021 · External reference
Differential proteomics study of postharvest Volvariella volvacea during storage at 4°C
10.1038/s41598-020-69988-8 · 2020 · External reference
Effects of chitosan-calcium coating on the physiological characteristics and browning of Stropharia rugosoannulata during postharvest storage
10.1016/j.foodres.2025.116226 · 2025 · External reference
Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3 N
10.1101/gr.275193.120 · 2021 · External reference
Isolation and characterization of a novel lectin from the edible mushroom Stropharia rugosoannulata
10.3390/molecules191219880 · 2014 · External reference
Insights into cell wall metabolism and remodeling process of postharvest Coprinus comatus fruiting body
10.1016/j.foodchem.2025.145670 · 2025 · External reference