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References from Lineage-specific remodeling of a conserved tRNA-Thr-associated genomic island in Edwardsiella anguillarum. Local targets link to admitted publications; unresolved targets remain external evidence.
Edwardsiella piscicida sp. nov., a novel species pathogenic to fish
10.1111/jam.12080 · 2013 · External reference
Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov
10.1099/ijsem.0.001485 · 2016 · External reference
Whole genome analysis of Yersinia ruckeri isolated over 27 years in Australia and New Zealand reveals geographical endemism over multiple lineages and recent evolution under host selection
2016 · External reference
Bakta Web—rapid and standardized genome annotation on scalable infrastructures
10.1093/nar/gkaf335 · 2025 · External reference
Genetic studies to re-affiliate Edwardsiella tarda fish isolates to Edwardsiella piscicida and Edwardsiella anguillarum species
10.1016/j.syapm.2017.09.004 · 2018 · External reference
Comparative genomics of Edwardsiella anguillarum and Edwardsiella piscicida isolated in Taiwan enables the identification of distinctive features and potential virulence factors using Oxford-Nanopore MinION® sequencing
10.1111/jfd.13743 · 2023 · External reference
eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale
10.1093/molbev/msab293 · 2021 · External reference
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
10.1093/bioinformatics/btp348 · 2009 · External reference
Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp
10.1002/imt2.107 · 2023 · External reference
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
10.1371/journal.pone.0011147 · 2010 · External reference
Genomic islands in pathogenic and environmental microorganisms
10.1038/nrmicro884 · 2004 · External reference
clinker & clustermap.js: automatic generation of gene cluster comparison figures
10.1093/bioinformatics/btab007 · 2021 · External reference
Proksee: in-depth characterization and visualization of bacterial genomes
10.1093/nar/gkad326 · 2023 · External reference
Edwardsiella piscicida identified in the Southeastern USA by gyrB sequence, species-specific and repetitive sequence-mediated PCR
10.3354/dao02687 · 2014 · External reference
Phylogeography and host specificity of Pasteurellaceae pathogenic to sea-farmed fish in the north-east Atlantic
10.3389/fmicb.2023.1236290 · 2023 · External reference
Characterization of Edwardsiella Species Isolated from Cultured Fishes in Ehime, Japan
10.3147/jsfp.60.33 · 2025 · External reference
Comparative genomics of Edwardsiella piscicida in the Japanese flounder (Paralichthys olivaceus): discovery and implications of a novel genomic island
10.1111/jfd.70035 · 2026 · External reference
High throughput ANI analysis of 90 K prokaryotic genomes reveals clear species boundaries
10.1038/s41467-018-07641-9 · 2018 · External reference
Genomic islands: tools of bacterial horizontal gene transfer and evolution
10.1111/j.1574-6976.2008.00136.x · 2009 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
Assembly of long, error-prone reads using repeat graphs
10.1038/s41587-019-0072-8 · 2019 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
MUMmer4: a fast and versatile genome alignment system
10.1371/journal.pcbi.1005944 · 2018 · External reference
Comparative genomics reveals that a fish pathogenic bacterium Edwardsiella tarda has acquired the locus of enterocyte effacement (LEE) through horizontal gene transfer
10.1186/1471-2164-14-642 · 2013 · External reference
Comparative phenotypic and genotypic analysis of Edwardsiella isolates from different hosts and geographic origins, with emphasis on isolates formerly classified as E. tarda, and evaluation of diagnostic methods
10.1128/jcm.00970-17 · 2017 · External reference
An introduction to microbial genomic islands for evolutionary adaptation and pathogenicity
10.1007/978-981-19-9342-8 · 2023 · External reference
Phylogenomics characterization of a highly virulent Edwardsiella strain ET080813(T) encoding two distinct T3SS and three T6SS gene clusters: propose a novel species as Edwardsiella anguillarum sp. nov
10.1016/j.syapm.2014.10.008 · 2015 · External reference
Regulation of cell division, biofilm formation, and virulence by FlhC in Escherichia coli O157:H7 grown on meat
10.1128/aem.00069-11 · 2011 · External reference
NCBI prokaryotic genome annotation pipeline
10.1093/nar/gkw569 · 2016 · External reference
Comparative genomics of the fish pathogens Edwardsiella ictaluri 93–146 and Edwardsiella piscicida C07-087
2020 · External reference
Producing polished prokaryotic pangenomes with the Panaroo pipeline
10.1186/s13059-020-02090-4 · 2020 · External reference
IQ-TREE 3: phylogenomic inference software using complex evolutionary models
10.1093/molbev/msag117 · 2026 · External reference
Edwardsiella comparative phylogenomics reveal the new intra/inter-species taxonomic relationships, virulence evolution and niche adaptation mechanisms
10.1371/journal.pone.0036987 · 2012 · External reference