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References from Genomic signatures of cold adaptation in a Himalayan drosophilid. Local targets link to admitted publications; unresolved targets remain external evidence.
Drosophila suzukii: the genetic footprint of a recent, worldwide invasion
10.1093/molbev/msu246 · 2014 · External reference
Genomics and the future of conservation genetics
10.1038/nrg2844 · 2010 · External reference
Rapid and sensitive detection of genome contamination at scale with FCS-GX
10.1186/s13059-024-03198-7 · 2024 · External reference
Mining of key genes for cold adaptation from Pseudomonas fragi D12 and analysis of its cold-adaptation mechanism
10.3389/fmicb.2023.1215837 · 2023 · External reference
Gene family expansions and contractions are associated with host range in plant pathogens of the genus colletotrichum
10.1186/s12864-016-2917-6 · 2016 · External reference
Temperature preference and temperature tolerance are wired differently in Drosophila
10.1016/j.anbehav.2025.123438 · 2026 · External reference
Rapid range shifts of species associated with high levels of climate warming
10.1126/science.1206432 · 2011 · External reference
The caspase gene family in Micropterus salmoides: genome-wide characterization, bioinformatics, and expression profiling analysis
10.1186/s12864-026-12644-8 · 2026 · External reference
Polishing the Oxford nanopore long-read assemblies of bacterial pathogens with illumina short reads to improve genomic analyses
10.1016/j.ygeno.2021.03.018 · 2021 · External reference
ATP-dependent chromatin remodeling by the cockayne syndrome B DNA repair-transcription-coupling factor
10.1128/mcb.20.20.7643-7653.2000 · 2000 · External reference
Cold acclimation triggers major transcriptional changes in Drosophila suzukii
10.1186/s12864-019-5745-7 · 2019 · External reference
Lipid properties and metabolism in response to cold
10.1007/5584_2024_848 · 2025 · External reference
10.1101/2023.08.13.553086
10.1101/2023.08.13.553086 · 2023 · External reference
Climate change causes upslope shifts and mountaintop extirpations in a tropical bird community
10.1073/pnas.1804224115 · 2018 · External reference
Memory-efficient assembly using flye
10.1109/tcbb.2021.3108843 · 2022 · External reference
Role of a serine protease gene (AccSp1) from Apis cerana cerana in abiotic stress responses and innate immunity
10.1007/s12192-018-0934-x · 2019 · External reference
Analysis of DNA by agarose gel electrophoresis
10.1101/pdb.top100388 · 2019 · External reference
QUAST: quality assessment tool for genome assemblies
10.1093/bioinformatics/btt086 · 2013 · External reference
Genome-wide identification and characterization of WD40 protein genes in the silkworm, bombyx mori
10.3390/ijms19020527 · 2018 · External reference
Novel and PCR ready rapid DNA isolation from Drosophila
10.1080/15257770.2022.2104313 · 2022 · External reference
Climate change and evolutionary adaptation
10.1038/nature09670 · 2011 · External reference
SNAREs and traffic
10.1016/j.bbamcr.2005.03.014 · 2005 · External reference
Adult plasticity of cold tolerance in a continental-temperate population of Drosophila suzukii
10.1016/j.jinsphys.2015.05.003 · 2015 · External reference
Cell-free synthesis and assembly of prolyl 4-hydroxylase: the role of the beta-subunit (PDI) in preventing misfolding and aggregation of the alpha-subunit
10.1002/j.1460-2075.1993.tb05803.x · 1993 · External reference
Ornithine decarboxylase, the rate-limiting enzyme of polyamine synthesis, modifies brain pathology in a mouse model of tuberous sclerosis complex
10.1093/hmg/ddaa121 · 2020 · External reference
10.32614/cran.package.rstatix
10.32614/cran.package.rstatix · External reference
Gene family expansions in antarctic winged midge as a strategy for adaptation to cold environments
10.1038/s41598-022-23268-9 · 2022 · External reference
Climatic adaptations and distributions in the Drosophila takahashii species subgroup (Diptera: drosophilidae)
10.1080/00222939400770181 · 1994 · External reference
The activation parameters of a cold-adapted short chain dehydrogenase are insensitive to enzyme oligomerization
10.1021/acs.biochem.2c00024 · 2022 · External reference
Projected range contractions of montane biodiversity under global warming
10.1098/rspb.2010.0612 · 2010 · External reference
Ion transporter gene families as physiological targets of natural selection during salinity transitions in a copepod
10.1152/physiol.00009.2021 · 2021 · External reference
Zinc finger proteins facilitate adaptation of a global insect pest to climate change
10.1186/s12915-024-02109-3 · 2024 · External reference
The secret lives of Drosophila flies
10.7554/elife.06793 · 2015 · External reference
Drosophila biology in the genomic age
10.1534/genetics.107.074112 · 2007 · External reference
10.1016/j.csbj.2021.09.024 · 2021 · Admitted local publication
CAFE 5 models variation in evolutionary rates among gene families
10.1093/bioinformatics/btaa1022 · 2021 · External reference
A zinc finger protein shapes the temperature adaptability of a cosmopolitan pest
10.1098/rsob.240346 · 2025 · External reference
First genome sequence of the microcolonial black fungus Saxispiralis lemnorum MUM 23.14: insights into the unique genomic traits of the Aeminiaceae family
10.3390/microorganisms12010104 · 2024 · External reference
Climate warming mediates range shift of two differentially adapted stenothermal Drosophila species in the western Himalayas
10.1016/j.aspen.2012.12.004 · 2013 · External reference
Adaptations to environmental stress in altitudinal populations of two Drosophila species
10.1111/j.1365-3032.2005.00470.x · 2005 · External reference
Inter and intraspecific genomic divergence in Drosophila Montana shows evidence for cold adaptation
10.1093/gbe/evy147 · 2018 · External reference
Sex-specific responses to cold in a very cold-tolerant, northern Drosophila species
10.1038/s41437-020-00398-2 · 2021 · External reference
Elevation-dependent warming in mountain regions of the world
10.1038/nclimate2563 · 2015 · External reference
Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes
10.1101/gr.7046608 · 2008 · External reference
Unresolved reference
2015 · External reference
Climatic changes and shifting species boundaries of drosophilids in the western himalaya
10.16380/j.kcxb.2008.03.005 · 2008 · External reference
Comparative genomic analysis reveals contraction of gene families with putative roles in pathogenesis in the fungal boxwood pathogens calonectria henricotiae and C. Pseudonaviculata
10.1186/s12862-022-02035-4 · 2022 · External reference
Range shifts of a relict himalayan dragonfly in The Hindu kush himalayan region under climate change scenarios
10.1080/13887890.2012.697399 · 2012 · External reference
Expansion and function of repeat domain proteins during stress and development in plants
10.3389/fpls.2015.01218 · 2015 · External reference
Widespread climate change in the Himalayas and associated changes in local ecosystems
10.1371/journal.pone.0036741 · 2012 · External reference
Gene duplication, lineage-specific expansion, and subfunctionalization in the MADF-BESS family patterns the Drosophila wing hinge
10.1534/genetics.113.160531 · 2014 · External reference
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
10.1093/bioinformatics/btv351 · 2015 · External reference
Unveiling of climate change-driven decline of suitable habitat for himalayan bumblebees
10.1038/s41598-024-52340-9 · 2024 · External reference
10.1201/9781003642596-4
10.1201/9781003642596-4 · 2025 · External reference
Improved repeat identification and masking in dipterans
10.1016/j.gene.2006.09.011 · 2007 · External reference
Insect cold hardiness: metabolic, gene, and protein adaptation
10.1139/z2012-011 · 2012 · External reference
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
10.1093/nar/gkad313 · 2023 · External reference
Transposable elements in Drosophila Montana from harsh cold environments
10.1186/s13100-024-00328-7 · 2024 · External reference
High and low temperatures differentially affect survival, reproduction, and gene transcription in male and female moths of Spodoptera frugiperda
10.3390/insects14120958 · 2023 · External reference
Genomic analysis of the polyamine biosynthesis pathway in duckweed Spirodela polyrhiza L.: presence of the arginine decarboxylase pathway, absence of the ornithine decarboxylase pathway, and response to abiotic stresses
10.1007/s00425-021-03755-5 · 2021 · External reference
Fast and accurate de novo genome assembly from long uncorrected reads
10.1101/gr.214270.116 · 2017 · External reference
Differential transcriptome analysis reveals genes related to low- and high-temperature stress in the fall armyworm, Spodoptera frugiperda
10.3389/fphys.2021.827077 · 2021 · External reference
Cryoprotectant biosynthesis and the selective accumulation of threitol in the freeze-tolerant alaskan beetle, upis ceramboides
10.1074/jbc.m109.013870 · 2009 · External reference
Chromosomal-level genome assembly of Drosophila suzukii matsumura (Diptera: drosophilidae)
10.1038/s41597-025-05890-0 · 2025 · External reference
Genomic evolution and ecotype divergence in thraustochytrids: insights from comparative genomics and phylogenomics
10.3389/fmicb.2025.1608951 · 2025 · External reference
Cold adaptation drives population genomic divergence in the ecological specialist, Drosophila Montana
10.1111/mec.16003 · 2021 · External reference
10.1007/978-3-319-24277-4
10.1007/978-3-319-24277-4 · 2016 · External reference
Molecular mechanisms of lipid-based metabolic adaptation strategies in response to cold
10.3390/cells12101353 · 2023 · External reference
Adaptation of Drosophila species to climate change — a literature review since 2003
10.1016/s2095-3119(18)62042-8 · 2019 · External reference
Evolutionary genetics of Drosophila ananassae III. Effect of temperature on certain fitness traits in two natural populations
10.1016/j.jtherbio.2005.05.007 · 2005 · External reference
10.1007/978-1-4842-6876-6
10.1007/978-1-4842-6876-6 · 2021 · External reference
Identification and analysis of gene families expansion and contraction in Coilia nasus
10.11964/jfc.20201112478 · 2022 · External reference
HMG modifications and nuclear function
10.1016/j.bbagrm.2009.11.009 · 2010 · External reference
