Research graph
References from A population genomic resource for Drosophila pseudoobscura. Local targets link to admitted publications; unresolved targets remain external evidence.
Genetics of natural populations xlii. Three decades of genetic change in Drosophila pseudoobscura
10.1111/j.1558-5646.1975.tb00810.x · 1975 · External reference
Four decades of inversion polymorphism in Drosophila pseudoobscura
10.1073/pnas.88.22.10367 · 1991 · External reference
Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome
10.1093/molbev/msp291 · 2010 · External reference
Faster-X effects in two Drosophila lineages
10.1093/gbe/evu229 · 2014 · External reference
Evidence for male-driven evolution in Drosophila
10.1093/molbev/msn020 · 2008 · External reference
Rates of DNA sequence evolution are not sex-biased in Drosophila melanogaster and D. simulans
10.1093/oxfordjournals.molbev.a025734 · 1997 · External reference
How chromosomal inversions reorient the evolutionary process
10.1111/jeb.14242 · 2023 · External reference
Complex evolutionary history of the Y chromosome in flies of the Drosophila obscura species group
10.1093/gbe/evaa051 · 2020 · External reference
Rapid neo-sex chromosome evolution and incipient speciation in a major forest pest
10.1038/s41467-017-01761-4 · 2017 · External reference
Y chromosome of D. Pseudoobscura is not homologous to the ancestral Drosophila Y
10.1126/science.1101675 · 2005 · External reference
Origin and evolution of Y chromosomes: Drosophila tales
10.1016/j.tig.2009.04.002 · 2009 · External reference
Second-generation PLINK: rising to the challenge of larger and richer datasets
10.1186/s13742-015-0047-8 · 2015 · External reference
Genomic changes following the reversal of a Y chromosome to an autosome in Drosophila pseudoobscura
10.1111/evo.13229 · 2017 · External reference
The relative rates of evolution of sex chromosomes and autosomes
10.1086/284701 · 1987 · External reference
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
10.1017/s0016672397002954 · 1997 · External reference
Chromosome fusion affects genetic diversity and evolutionary turnover of functional loci but consistently Depends on chromosome size
10.1093/molbev/msab185 · 2021 · External reference
Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift
10.3389/fgene.2012.00035 · 2012 · External reference
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
10.4161/fly.19695 · 2012 · External reference
Background selection as baseline for nucleotide variation across the Drosophila genome
10.1371/journal.pgen.1004434 · 2014 · External reference
VCF-kit: assorted utilities for the variant call format
10.1093/bioinformatics/btx011 · 2017 · External reference
The variant call format and VCFtools
10.1093/bioinformatics/btr330 · 2011 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
Unresolved reference
1944 · External reference
Chromosomal variation in populations of Drosophila pseudoobscura which inhabit northern Mexico
10.1086/281570 · 1948 · External reference
Inversions in the chromosomes of Drosophila pseudoobscura
10.1093/genetics/23.1.28 · 1938 · External reference
Characteristics, causes and evolutionary consequences of male-biased mutation
10.1098/rspb.2006.3720 · 2007 · External reference
Determinants of genetic diversity
10.1038/nrg.2016.58 · 2016 · External reference
Chromosomal speciation revisited: rearranging theory with pieces of evidence
10.1016/j.tree.2010.07.008 · 2010 · External reference
Extensive recombination suppression and epistatic selection causes chromosome-wide differentiation of a selfish sex chromosome in Drosophila pseudoobscura
10.1534/genetics.120.303460 · 2020 · External reference
Genomics of natural populations: how differentially expressed genes shape the evolution of chromosomal inversions in Drosophila pseudoobscura
10.1534/genetics.116.191429 · 2016 · External reference
Genomics of natural populations: evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura
10.1111/mec.14381 · 2017 · External reference
How chromosomal rearrangements shape adaptation and speciation: case studies in Drosophila pseudoobscura and its sibling species Drosophila persimilis
10.1111/mec.14923 · 2019 · External reference
10.48550/arxiv.1207.3907
10.48550/arxiv.1207.3907 · 2012 · External reference
Local adaptation and the evolution of chromosome fusions
10.1111/evo.12481 · 2014 · External reference
Coalescent patterns for chromosomal inversions in divergent populations
10.1098/rstb.2011.0246 · 2012 · External reference
DNA sequence variation and the recombinational landscape in Drosophila pseudoobscura: a study of the second chromosome
10.1093/genetics/153.2.859 · 1999 · External reference
Enrichment of hard sweeps on the X chromosome compared to autosomes in six Drosophila species
10.1093/genetics/iyae019 · 2024 · External reference
Unresolved reference
2007 · External reference
Unresolved reference
External reference
Inversions shape the divergence of Drosophila pseudoobscura and Drosophila persimilis on multiple timescales
10.1111/evo.14278 · 2021 · External reference
Molecular population genetics of X-linked genes in Drosophila pseudoobscura
10.1093/genetics/156.1.155 · 2000 · External reference
Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence
10.1073/pnas.0801848105 · 2008 · External reference
The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing
10.1371/journal.pgen.1000550 · 2009 · External reference
Genomic variation in natural populations of Drosophila melanogaster
10.1534/genetics.112.142018 · 2012 · External reference
Recent selection on the Y-to-dot translocation in Drosophila pseudoobscura
10.1093/molbev/msu002 · 2014 · External reference
Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura
10.1093/molbev/msq045 · 2010 · External reference
10.48550/arxiv.1303.3997
10.48550/arxiv.1303.3997 · 2013 · External reference
Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
10.1101/gr.266130.120 · 2021 · External reference
Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis
10.1534/genetics.106.064758 · 2007 · External reference
Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives
10.1093/oxfordjournals.molbev.a004103 · 2002 · External reference
The Drosophila melanogaster genetic reference panel
10.1038/nature10811 · 2012 · External reference
Population bottlenecks and nonequilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck
10.1093/genetics/111.3.675 · 1985 · External reference
Recombination modulates how selection affects linked sites in Drosophila
10.1371/journal.pbio.1001422 · 2012 · External reference
The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
10.1101/gr.107524.110 · 2010 · External reference
The faster-X effect: integrating theory and data
10.1016/j.tig.2013.05.009 · 2013 · External reference
Adaptive evolution of genes duplicated from the Drosophila pseudoobscura neo-X chromosome
10.1093/molbev/msq085 · 2010 · External reference
Faster-X evolution of gene expression in Drosophila
10.1371/journal.pgen.1003013 · 2012 · External reference
Population structure and its effects on patterns of nucleotide polymorphism in teosinte (Zea mays ssp. parviglumis)
10.1534/genetics.107.070631 · 2007 · External reference
Unresolved reference
1940 · External reference
Effect of inversion polymorphism on the neutral nucleotide variability of linked chromosomal regions in Drosophila
10.1093/genetics/155.2.685 · 2000 · External reference
A scan for positively selected genes in the genomes of humans and chimpanzees
10.1371/journal.pbio.0030170 · 2005 · External reference
Divergence between the Drosophila pseudoobscura and D. persimilis genome sequences in relation to chromosomal inversions
10.1534/genetics.107.070672 · 2007 · External reference
The genealogy of sequences containing multiple sites subject to strong selection in a subdivided population
10.1093/genetics/163.3.1201 · 2003 · External reference
Cytological basis of “Sex Ratio” in Drosophila pseudoobscura
10.1126/science.148.3669.516 · 1965 · External reference
10.1101/201178
10.1101/201178 · 2018 · External reference
Inference of population structure using multilocus genotype data
10.1093/genetics/155.2.945 · 2000 · External reference
fastSTRUCTURE: variational inference of population structure in large SNP data sets
10.1534/genetics.114.164350 · 2014 · External reference
The Drosophila dot chromosome: where genes flourish amidst repeats
10.1534/genetics.118.301146 · 2018 · External reference
Chromosomal rearrangements and speciation
10.1016/s0169-5347(01)02187-5 · 2001 · External reference
Purification of nucleic acids by extraction with phenol:chloroform
10.1101/pdb.prot4455 · 2006 · External reference
Natural selection shapes variation in genome-wide recombination rate in Drosophila pseudoobscura
10.1016/j.cub.2020.03.053 · 2020 · External reference
Molecular population genetics of sequence length diversity in the Adh region of Drosophila pseudoobscura
10.1017/s0016672302005955 · 2002 · External reference
Evolutionary genomics of inversions in Drosophila pseudoobscura: evidence for epistasis
10.1073/pnas.1432900100 · 2003 · External reference
Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps
10.1534/genetics.107.086074 · 2008 · External reference
Selection in heterogeneous environments maintains the gene arrangement polymorphism of Drosophila pseudoobscura
10.1111/j.1558-5646.2008.00504.x · 2008 · External reference
Estimates of gene flow in Drosophila pseudoobscura determined from nucleotide sequence analysis of the alcohol dehydrogenase region
10.1093/genetics/132.2.471 · 1992 · External reference
Genomics of natural populations: gene conversion events reveal selected genes within the inversions of Drosophila pseudoobscura
10.1093/g3journal/jkae176 · 2024 · External reference
Protein variation in Adh and Adh-related in Drosophila pseudoobscura. Linkage disequilibrium between single nucleotide polymorphisms and protein alleles
10.1093/genetics/159.2.673 · 2001 · External reference
Background selection does not mimic the patterns of genetic diversity produced by selective sweeps
10.1534/genetics.120.303469 · 2020 · External reference
Pervasive natural selection in the Drosophila genome?
10.1371/journal.pgen.1000495 · 2009 · External reference
Similar levels of X-linked and autosomal nucleotide variation in African and non-African populations of Drosophila melanogaster
10.1186/1471-2148-7-202 · 2007 · External reference
Demasculinization of X chromosomes in the Drosophila genus
10.1038/nature06330 · 2007 · External reference
Geographical distribution and cytology of “sex ratio” in Drosophila pseudoobscura and related species
10.1093/genetics/21.4.473 · 1936 · External reference
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
10.1093/genetics/123.3.585 · 1989 · External reference
Unresolved reference
2020 · External reference
Reversal of an ancient sex chromosome to an autosome in Drosophila
10.1038/nature12235 · 2013 · External reference
Effective population size and the faster-X effect: an extended model
10.1111/j.1558-5646.2009.00719.x · 2009 · External reference
A multispecies approach for comparing sequence evolution of X-linked and autosomal sites in Drosophila
10.1017/s0016672308009804 · 2008 · External reference
Evolutionary history of the third chromosome gene arrangements of Drosophila pseudoobscura inferred from inversion breakpoints
10.1093/molbev/msr039 · 2011 · External reference
Neo-sex chromosome evolution shapes sex-dependent asymmetrical introgression barrier
10.1073/pnas.2119382119 · 2022 · External reference
Nucleotide variation along the Drosophila melanogaster fourth chromosome
10.1126/science.1064521 · 2002 · External reference
Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans
10.1101/gr.277383.122 · 2023 · External reference
On the number of segregating sites in genetical models without recombination
10.1016/0040-5809(75)90020-9 · 1975 · External reference
Estimating F-statistics for the analysis of population structure
10.2307/2408641 · 1984 · External reference
Eco-evolutionary genomics of chromosomal inversions
10.1016/j.tree.2018.04.002 · 2018 · External reference
Chromosomal rearrangements and speciation in animals
10.1146/annurev.ge.03.120169.000451 · 1969 · External reference
Unresolved reference
2023 · External reference
Subdivision and haplotype structure in natural populations of Arabidopsis lyrata
10.1046/j.1365-294x.2003.01743.x · 2003 · External reference
Chromosome fusions repatterned recombination rate and facilitated reproductive isolation during Pristionchus nematode speciation
10.1038/s41559-022-01980-z · 2023 · External reference
Sex-specific adaptation drives early sex chromosome evolution in Drosophila
10.1126/science.1225385 · 2012 · External reference
