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References from A High-Quality Genome Assembly of Johnsongrass Illuminates Relationships Between Polyploidization, Crop-Wild Hybridization, and Reproductive Biology. Local targets link to admitted publications; unresolved targets remain external evidence.
Estimation of in situ mating systems in wild sorghum (Sorghum bicolor (L.) moench) in Ethiopia using SSR-based progeny array data: implications for the spread of crop genes into the wild
10.1007/s12041-013-0214-6 · 2013 · External reference
Assessing environmental risks of transgenic plants
10.1111/j.1461-0248.2005.00846.x · 2006 · External reference
Crop-to-weed gene flow in the genus Sorghum (Poaceae): spontaneous interspecific hybridization between johnsongrass, Sorghum halepense, and crop sorghum, S. bicolor
10.2307/2446198 · 1996 · External reference
Repbase update, a database of repetitive elements in eukaryotic genomes
10.1186/s13100-015-0041-9 · 2015 · External reference
Pollen tube growth after intergeneric pollinations of iap-homozygous sorghum
10.2135/cropsci2011.09.0474 · 2012 · External reference
Unresolved reference
2014 · External reference
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations
10.1104/pp.113.230144 · 2014 · External reference
Genome annotation and curation using MAKER and MAKER-P
10.1002/0471250953.bi0411s48 · 2014 · External reference
Fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
10.1038/s41592-020-01056-5 · 2021 · External reference
Development of perennial grain sorghum
10.3390/su10010172 · 2018 · External reference
Benefits and risks of gene drives for invasive plant management-the case for common tansy
10.3389/fagro.2023.1290781 · 2023 · External reference
Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective
10.1111/nph.18927 · 2023 · External reference
Sorghum resolved as a distinct genus based on combined ITS1, ndhF and Adh1 analyses
10.1007/s00606-007-0571-9 · 2007 · External reference
STAR: ultrafast universal RNA-Seq aligner
10.1093/bioinformatics/bts635 · 2012 · External reference
Ageing: how do long-lived plants escape mutational meltdown?
10.1016/j.cub.2016.05.049 · 2016 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
RepeatModeler2 for automated genomic discovery of transposable element families
10.1073/pnas.1921046117 · 2020 · External reference
Unresolved reference
2014 · External reference
All ways lead to Rome—meiotic stabilization can take many routes in nascent polyploid plants
10.3390/genes13010147 · 2022 · External reference
De novo transcript sequence reconstruction from RNA-Seq using the Trinity platform for reference generation and analysis
10.1038/nprot.2013.084 · 2013 · External reference
Towards a perennial biomass sorghum crop: a comparative investigation of biomass yields and overwintering of Sorghum bicolor x S-halepense lines relative to long term S. bicolor trials in northern Italy
10.1016/j.biombioe.2017.03.004 · 2018 · External reference
Unresolved reference
External reference
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
10.1186/s12859-015-0611-3 · 2015 · External reference
Elimination of a reproductive barrier facilitates intergeneric hybridization of Sorghum bicolor and Saccharum
10.2135/cropsci2009.09.0486 · 2010 · External reference
Pollen-pistil interactions result in reproductive isolation between Sorghum bicolor and divergent Sorghum species
10.2135/cropsci2004.0429 · 2005 · External reference
Sorghum bicolor x S. halepense interspecific hybridization is influenced by the frequency of 2n gametes in S. bicolor
10.1038/s41598-019-53193-3 · 2019 · External reference
Predicting genes in single genomes with AUGUSTUS
10.1002/cpbi.57 · 2019 · External reference
Modeling the evolution of herbicide resistance in weed species with a complex life cycle
10.1002/eap.2473 · 2022 · External reference
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
10.1126/science.abg5289 · 2021 · External reference
Registration of perennial Sorghum bicolor x S. propinquum line PSH12TX09
10.3198/jpr2015.09.0054crgs · 2017 · External reference
Registration of seed sterile, perennial Sorghum spp. Sorghum bicolor (L.) Moench x S. halepense (L.) pers. Hybrid ‘PSH09TX15
10.3198/jpr2016.09.0048crgs · 2017 · External reference
Utilizing genetic variation in perennial sorghum to improve host plant resistance to aphids
10.1038/s41598-025-97746-1 · 2025 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
10.1038/s41587-019-0201-4 · 2019 · External reference
Invasive johnsongrass, a threat to native grasslands and agriculture
10.2478/s11756-020-00625-5 · 2021 · External reference
Transmission genetics of a Sorghum bicolor x S. halepense backcross population
10.3389/fpls.2020.00467 · 2020 · External reference
Distribution of arable weed populations along eastern Arkansas-Mississippi Delta roadsides: factors affecting weed occurrence
10.1614/wt-d-14-00152.1 · 2015 · External reference
Transformative approaches for sustainable weed management: the power of gene drive and CRISPR-cas9
10.3390/genes14122176 · 2023 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2013 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Phylogeny-aware alignment with PRANK. In: russell DJ, editor. Multiple sequence alignment methods
10.1007/978-1-62703-646-7_10 · 2014 · External reference
Personalized genome structure via single gamete sequencing
10.1186/s13059-021-02327-w · 2021 · External reference
Pollen-mediated transfer of herbicide resistance between johnsongrass (Sorghum halepense) biotypes
10.1038/s41598-022-11713-8 · 2022 · External reference
BUSCO: assessing genomic data quality and beyond
10.1002/cpz1.323 · 2021 · External reference
MUMmer4: a fast and versatile genome alignment system
10.1371/journal.pcbi.1005944 · 2018 · External reference
Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution
10.3389/fgene.2020.01014 · 2020 · External reference
Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules
10.2144/000114460 · 2016 · External reference
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
10.1111/tpj.13781 · 2018 · External reference
Large-scale gene function analysis with the PANTHER classification system
10.1038/nprot.2013.092 · 2013 · External reference
Crop-to-weed introgression has impacted allelic composition of johnsongrass populations with and without recent exposure to cultivated sorghum
10.1111/j.1365-294x.2005.02579.x · 2005 · External reference
Response to selection in the initial stages of a perennial sorghum breeding program
10.1007/s10681-016-1639-9 · 2016 · External reference
Prediction of regrowth and biomass of perennial sorghum using unoccupied aerial systems
10.1002/csc2.20758 · 2022 · External reference
Gene flow and its consequences in Sorghum spp
10.1080/07352689.2018.1446813 · 2017 · External reference
Genomics of Sorghum
10.1155/2008/362451 · 2008 · External reference
The evolution of an invasive plant, Sorghum halepense L. (‘Johnsongrass’)
10.3389/fgene.2020.00317 · 2020 · External reference
The weediness of wild plants—molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L) pers
10.1073/pnas.92.13.6127 · 1995 · External reference
SNAP: workbench management tool for evolutionary population genetic analysis
10.1093/bioinformatics/bti003 · 2005 · External reference
Genotype dependent interspecific hybridization of Sorghum bicolor
10.2135/cropsci2005.09.0295 · 2006 · External reference
GenomeScope 2.0 and smudgeplot for reference-free profiling of polyploid genomes
10.1038/s41467-020-14998-3 · 2020 · External reference
Transcriptome assembly and annotation of johnsongrass (Sorghum halepense) rhizomes identify candidate rhizome-specific genes
10.1002/pld3.65 · 2018 · External reference
Rate of crop-weed hybridization in Sorghum bicolor × Sorghum halepense is influenced by genetic background, pollen load, and the environment
10.1111/eva.13536 · 2023 · External reference
Fast, scalable generation of high-quality protein multiple sequence alignments using clustal Omega
10.1038/msb.2011.75 · 2011 · External reference
Unresolved reference
2015 · External reference
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
10.1093/bioinformatics/btu033 · 2014 · External reference
Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar
10.1038/s41588-022-01015-0 · 2022 · External reference
Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice
10.1111/mec.14297 · 2017 · External reference
Extensive variation within the pan-genome of cultivated and wild sorghum
10.1038/s41477-021-00925-x · 2021 · External reference
Unresolved reference
2019 · External reference
Agricultural weeds: the contribution of domesticated species to the origin and evolution of feral weeds
10.1002/ps.7321 · 2023 · External reference
Evidence of allopolyploidy in Urochloa humidicola based on cytological analysis and genetic linkage mapping
10.1371/journal.pone.0153764 · 2016 · External reference
Unresolved reference
2024 · External reference
The architecture of intra-organism mutation rate variation in plants
10.1371/journal.pbio.3000191 · 2019 · External reference
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
10.1093/nar/gkr1293 · 2012 · External reference
Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX
10.1038/s41596-024-00968-2 · 2024 · External reference
Estimation of rhizome composition and overwintering ability in perennial Sorghum spp. Using near-infrared spectroscopy (NIRS)
10.1007/s12155-013-9305-8 · 2013 · External reference
Distribution of herbicide-resistant shattercane and johnsongrass populations in sorghum production areas of Nebraska and northern Kansas
10.2134/agronj2015.0217 · 2016 · External reference
Biotechnological road map for innovative weed management
10.3389/fpls.2022.887723 · 2022 · External reference
10.1093/molbev/msag117
10.1093/molbev/msag117 · External reference
A parthenogenesis gene candidate and evidence for segmental allopolyploidy in apomictic Brachiaria decumbens
10.1534/genetics.116.190314 · 2016 · External reference
PAML 4: phylogenetic analysis by maximum likelihood
10.1093/molbev/msm088 · 2007 · External reference
Ensembl genomes 2022: an expanding genome resource for non-vertebrates
10.1093/nar/gkab1007 · 2022 · External reference
Unresolved reference
2023 · External reference
Unresolved reference
External reference
Mutations of the ALS gene endowing resistance to ALS-inhibiting herbicides in Lolium rigidum populations
10.1002/ps.1624 · 2008 · External reference
Genome-wide investigation reveals high evolutionary rates in annual model plants
10.1186/1471-2229-10-242 · 2010 · External reference
Structural variation reshapes population gene expression and trait variation in 2,105 Brassica napus accessions
10.1038/s41588-024-01957-7 · 2024 · External reference
Phased T2T genome of a tetraploid grapevine reveals segmental allopolyploid origin and allele-specific alternative splicing during fruit development
10.1093/plphys/kiag330 · 2026 · External reference