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References from Uncertainty-aware breeding decisions: MCMC-based optimum contribution selection increases breeding decision robustness. Local targets link to admitted publications; unresolved targets remain external evidence.
Using semidefinite programming to optimize unequal deployment of genotypes to a clonal seed orchard
10.1007/s11295-013-0659-z · 2013 · External reference
Efficient breeding by genomic mating
10.3389/fgene.2016.00210 · 2016 · External reference
Aghmatrix: genetic relationship matrices in r
10.1093/bioinformatics/btad445 · 2023 · External reference
10.3390/crops5020008
10.3390/crops5020008 · 2025 · External reference
Coherent measures of risk
10.1111/1467-9965.00068 · 1999 · External reference
Mendelian sampling terms as a selective advantage in optimum breeding schemes with restrictions on the rate of inbreeding
10.1017/s0016672303006566 · 2004 · External reference
Accuracies of estimated breeding values from ordinary genetic evaluations do not reflect the accuracy of predicted phenotypes in selected populations
10.1111/j.1439-0388.2012.00991.x · 2012 · External reference
10.1007/978-1-4614-0237-4
10.1007/978-1-4614-0237-4 · 2011 · External reference
10.1561/2200000016 · 2010 · Admitted local publication
The genetics of inbreeding depression
10.1038/nrg2664 · 2009 · External reference
Accuracy of genomic selection for growth and wood quality traits in two control-pollinated progeny trials using exome capture as the genotyping platform in Norway spruce
10.1186/s12864-018-5256-y · 2018 · External reference
Genomic prediction from multiple-trait bayesian regression methods using mixture priors
10.1534/genetics.118.300650 · 2018 · External reference
Single-step methods for genomic evaluation in pigs
10.1017/s1751731112000742 · 2012 · External reference
Optimized grouping to increase accuracy of prediction of breeding values based on group records in genomic selection breeding programs
10.1186/s12711-019-0509-z · 2019 · External reference
The effect of genomic information on optimal contribution selection in livestock breeding programs
10.1186/1297-9686-45-44 · 2013 · External reference
Optimal contribution selection improves the rate of genetic gain in grain yield and yield stability in spring canola in australia and canada
10.3390/plants12020383 · 2023 · External reference
Balancing selection for deleterious alleles in livestock
10.3389/fgene.2021.761728 · 2021 · External reference
Jump: a modeling language for mathematical optimization
10.1137/15m1020575 · 2017 · External reference
Efficient genomics-based “end-to-end” selective tree breeding framework
10.1038/s41437-023-00667-w · 2024 · External reference
Ridge regression and other kernels for genomic selection with r package rrblup
10.3835/plantgenome2011.08.0024 · 2011 · External reference
10.48550/arxiv.2412.02888
10.48550/arxiv.2412.02888 · 2024 · External reference
Cosmo: a conic operator splitting method for large convex problems
10.1007/s10957-021-01896-x · 2021 · External reference
Impact of kinship matrices on genetic gain and inbreeding with optimum contribution selection in a genomic dairy cattle breeding program
10.1186/s12711-023-00826-x · 2023 · External reference
Selection indices for non-linear profit functions
10.1007/bf00274177 · 1994 · External reference
Optimum contribution selection in large general tree breeding populations with an application to Scots pine
10.1007/s00122-009-0968-7 · 2009 · External reference
Optimal contribution selection in highly fecund species with overlapping generations
10.1093/jhered/esaa051 · 2020 · External reference
The genetic basis for constructing selection indexes
10.1093/genetics/28.6.476 · 1943 · External reference
Best linear unbiased estimation and prediction under a selection model
10.2307/2529430 · 1975 · External reference
Pedigree relationships to control inbreeding in optimum-contribution selection realise more genetic gain than genomic relationships
10.1186/s12711-019-0475-5 · 2019 · External reference
Making waves in breedbase: an integrated spectral data storage and analysis pipeline for plant breeding programs
10.1002/ppj2.20012 · 2021 · External reference
Variation in actual relationship as a consequence of Mendelian sampling and linkage
10.1017/s0016672310000480 · 2011 · External reference
An algorithm to compute optimal genetic contributions in selection programs with large numbers of candidates
10.2527/jas.2006-145 · 2006 · External reference
Breeding schemes with optimum-contribution selection or truncation selection for beef cattle destined for use on dairy females
10.3168/jds.2021-21258 · 2022 · External reference
Selective advantage of implementing optimal contributions selection and timescales for the convergence of long-term genetic contributions
10.1186/s12711-018-0392-z · 2018 · External reference
Fourth cycle breeding and testing strategy for pinus taeda in the nc state university cooperative tree improvement program
10.1007/s11295-019-1377-y · 2019 · External reference
Connectedness among test series in mixed linear models of genetic evaluation for forest trees
10.1007/s11295-015-0887-5 · 2015 · External reference
Unresolved reference
2015 · External reference
A relationship matrix including full pedigree and genomic information
10.3168/jds.2009-2061 · 2009 · External reference
Unresolved reference
1998 · External reference
Portfolio selection
10.1111/j.1540-6261.1952.tb01525.x · 1952 · External reference
Unresolved reference
1959 · External reference
Unresolved reference
2003 · External reference
Management of genetic diversity in the era of genomics
10.3389/fgene.2020.00880 · 2020 · External reference
Maximizing the response of selection with a predefined rate of inbreeding
10.2527/1997.754934x · 1997 · External reference
Optim: a mathematical optimization package for Julia
10.21105/joss.00615 · 2018 · External reference
Using branch-and-bound algorithms to optimize selection of a fixed-size breeding population under a relatedness constraint
10.1007/s11295-015-0961-z · 2015 · External reference
Unlocking genome-based prediction and selection in conifers: the key role of within-family prediction accuracy
10.1186/s13595-024-01269-0 · 2024 · External reference
Unresolved reference
2023 · External reference
Optimisation of contribution of candidate parents to maximise genetic gain and restricting inbreeding using semidefinite programming
10.1186/1297-9686-39-1-3 · 2007 · External reference
Unresolved reference
2006 · External reference
Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.)
10.1534/genetics.111.137026 · 2012 · External reference
Optimization of conditional value-at-risk
10.21314/jor.2000.038 · 2000 · External reference
Conditional value-at-risk for general loss distributions
10.1016/s0378-4266(02)00271-6 · 2002 · External reference
Unresolved reference
2011 · External reference
10.1137/1.9780898718751
10.1137/1.9780898718751 · 2009 · External reference
How economic weights translate into genetic and phenotypic progress, and vice versa
10.1186/s12711-023-00807-0 · 2023 · External reference
10.1007/b98952
10.1007/b98952 · 2002 · External reference
QTLMAS 2010: simulated dataset
10.1186/1753-6561-5-s3-s3 · 2011 · External reference
The effects of runs-of-homozygosity on pig domestication and breeding
10.1186/s12864-024-11189-y · 2025 · External reference
Mate selection: a useful approach to maximize genetic gain and control inbreeding in genomic and conventional oil palm (Elaeis guineensis Jacq.) hybrid breeding
10.1371/journal.pcbi.1010290 · 2023 · External reference
10.48550/arxiv.2003.01115
10.48550/arxiv.2003.01115 · 2020 · External reference
Efficient methods to compute genomic predictions
10.3168/jds.2007-0980 · 2008 · External reference
Prediction of genetic gain from quadratic optimisation with constrained rates of inbreeding
10.1186/1297-9686-38-2-127 · 2006 · External reference
Genomic optimum contribution selection and mate allocation using jump
10.1093/bioadv/vbaf259 · 2025 · External reference
Novel optimum contribution selection methods accounting for conflicting objectives in breeding programs for livestock breeds with historical migration
10.1186/s12711-017-0320-7 · 2017 · External reference
International genetic evaluation of dairy sires using a multiple-trait model with individual animal performance records
10.3168/jds.s0022-0302(01)74734-0 · 2001 · External reference
Optimum contribution selection for animal breeding and conservation: the R package optisel
10.1186/s12859-018-2450-5 · 2019 · External reference
Genetic contributions and their optimization
10.1111/jbg.12148 · 2015 · External reference
Expected genetic contributions and their impact on gene flow and genetic gain
10.1093/genetics/153.2.1009 · 1999 · External reference
An efficient second-order cone programming approach for optimal selection in tree breeding
10.1007/s11590-018-1229-y · 2018 · External reference