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References from A hybrid transcriptome assembly reveals coding and noncoding landscapes in Drosophila hemocytes. Local targets link to admitted publications; unresolved targets remain external evidence.
Predicting microRNA targeting efficacy in Drosophila
10.1186/s13059-018-1504-3 · 2018 · External reference
Transdifferentiation and proliferation in two distinct hemocyte lineages in Drosophila melanogaster larvae after wasp infection
10.1371/journal.ppat.1005746 · 2016 · External reference
Drosophila as a genetic model for hematopoiesis
10.1534/genetics.118.300223 · 2019 · External reference
Crystal cell rupture after injury in Drosophila requires the JNK pathway, small GTPases and the TNF homolog Eiger
10.1242/jcs.03420 · 2007 · External reference
Prophenoloxidase activation is required for survival to microbial infections in Drosophila
10.1371/journal.ppat.1004067 · 2014 · External reference
Brief guide to RT-qPCR
10.1016/j.mocell.2024.100141 · 2024 · External reference
Targeted gene expression as a means of altering cell fates and generating dominant phenotypes
10.1242/dev.118.2.401 · 1993 · External reference
Diversity and dynamics of the Drosophila transcriptome
10.1038/nature12962 · 2014 · External reference
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
10.1101/gad.17446611 · 2011 · External reference
The single-cell transcriptional landscape of mammalian organogenesis
10.1038/s41586-019-0969-x · 2019 · External reference
Temporal specificity and heterogeneity of Drosophila immune cells
10.15252/embj.2020104486 · 2020 · External reference
Toward a consensus in the repertoire of hemocytes identified in Drosophila
10.3389/fcell.2021.643712 · 2021 · External reference
Corrigendum: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence
10.1101/gr.270165.120 · 2020 · External reference
Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila
10.1038/s41467-020-18135-y · 2020 · External reference
Identification of functionally distinct macrophage subpopulations in Drosophila
10.7554/elife.58686 · 2021 · External reference
Cellular immune response to parasitization in Drosophila requires the EBF orthologue collier
10.1371/journal.pbio.0020196 · 2004 · External reference
NanoPack2: population-scale evaluation of long-read sequencing data
10.1093/bioinformatics/btad311 · 2023 · External reference
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
10.1101/gr.132159.111 · 2012 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
10.1093/nar/gku1099 · 2015 · External reference
Drosophila innate immunity: regional and functional specialization of prophenoloxidases
10.1186/s12915-015-0193-6 · 2015 · External reference
Thicker than blood: conserved mechanisms in Drosophila and vertebrate hematopoiesis
10.1016/s1534-5807(03)00335-6 · 2003 · External reference
Split-intein Gal4 provides intersectional genetic labeling that is repressible by Gal80
10.1073/pnas.2304730120 · 2023 · External reference
Paths and pathways that generate cell-type heterogeneity and developmental progression in hematopoiesis
10.7554/elife.67516 · 2021 · External reference
Drosophila as a model for the two myeloid blood cell systems in vertebrates
10.1016/j.exphem.2014.06.002 · 2014 · External reference
A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation
10.1101/gr.202432.115 · 2016 · External reference
Qbase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
10.1186/gb-2007-8-2-r19 · 2007 · External reference
Brief guide to gene cloning
10.1016/j.mocell.2025.100234 · 2025 · External reference
The cell-mediated immunity of Drosophila melanogaster: hemocyte lineages, immune compartments, microanatomy and regulation
10.1016/j.dci.2013.06.005 · 2014 · External reference
The Release 6 reference sequence of the Drosophila melanogaster genome
10.1101/gr.185579.114 · 2015 · External reference
Hematopoietic plasticity mapped in Drosophila and other insects
10.7554/elife.78906 · 2022 · External reference
Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs
10.1038/nature09616 · 2011 · External reference
Brief guide to Drosophila maintenance and husbandry
10.1016/j.mocell.2026.100349 · 2026 · External reference
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues
10.1038/s41592-019-0404-0 · 2019 · External reference
G:profiler-interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update)
10.1093/nar/gkad347 · 2023 · External reference
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
10.1093/nar/gkm391 · 2007 · External reference
Functional classification and experimental dissection of long noncoding RNAs
10.1016/j.cell.2018.01.011 · 2018 · External reference
Fast, sensitive and accurate integration of single-cell data with harmony
10.1038/s41592-019-0619-0 · 2019 · External reference
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
10.1186/s13059-019-1910-1 · 2019 · External reference
Nimrod, a putative phagocytosis receptor with EGF repeats in Drosophila plasmatocytes
10.1016/j.cub.2007.02.041 · 2007 · External reference
IVT-seq reveals extreme bias in RNA sequencing
10.1186/gb-2014-15-6-r86 · 2014 · External reference
Multiplexed multimodal single-cell technologies: from observation to perturbation analysis
10.1016/j.mocell.2024.100147 · 2024 · External reference
Constitutive activation of cellular immunity underlies the evolution of resistance to infection in Drosophila
10.7554/elife.59095 · 2020 · External reference
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
10.1186/1471-2105-12-323 · 2011 · External reference
Minimap2: pairwise alignment for nucleotide sequences
10.1093/bioinformatics/bty191 · 2018 · External reference
MAAPER: model-based analysis of alternative polyadenylation using 3′ end-linked reads
10.1186/s13059-021-02429-5 · 2021 · External reference
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
10.1016/j.cell.2015.05.002 · 2015 · External reference
A Hedgehog- and Antennapedia-dependent niche maintains Drosophila haematopoietic precursors
10.1038/nature05585 · 2007 · External reference
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
10.1093/nar/gks042 · 2012 · External reference
Two nimrod receptors, NimC1 and eater, synergistically contribute to bacterial phagocytosis in Drosophila melanogaster
10.1111/febs.14857 · 2019 · External reference
Identification of experimentally-supported poly(A) sites in single-cell RNA-seq data with SCINPAS
10.1093/nargab/lqad079 · 2023 · External reference
Drosophila as a model to study cellular communication between the hematopoietic niche and blood progenitors under homeostatic conditions and in response to an immune stress
10.3389/fimmu.2021.719349 · 2021 · External reference
Incredible RNA: dual functions of coding and noncoding
10.14348/molcells.2016.0039 · 2016 · External reference
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
10.1101/gr.133009.111 · 2012 · External reference
GFF utilities: GffRead and GffCompare
10.12688/f1000research.23297.1 · 2020 · External reference
Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references
10.1038/s41592-023-02003-w · 2023 · External reference
Accurate isoform discovery with IsoQuant using long reads
10.1038/s41587-022-01565-y · 2023 · External reference
Drosophila immune cell migration and adhesion during embryonic development and larval immune responses
10.1016/j.ceb.2015.07.003 · 2015 · External reference
Selective destruction of a host blood cell type by a parasitoid wasp
10.1073/pnas.81.19.6154 · 1984 · External reference
LoRDEC: accurate and efficient long read error correction
10.1093/bioinformatics/btu538 · 2014 · External reference
Drosophila immune cells transport oxygen through PPO2 protein phase transition
10.1038/s41586-024-07583-x · 2024 · External reference
Global patterns of tissue-specific alternative polyadenylation in Drosophila
10.1016/j.celrep.2012.01.001 · 2012 · External reference
Genetic analysis of contributions of dorsal group and JAK-Stat92E pathway genes to larval hemocyte concentration and the egg encapsulation response in Drosophila
10.1534/genetics.166.3.1343 · 2004 · External reference
Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns
10.1038/s41467-020-15171-6 · 2020 · External reference
A single-cell survey of Drosophila blood
10.7554/elife.54818 · 2020 · External reference
Alternative polyadenylation of mRNA precursors
10.1038/nrm.2016.116 · 2017 · External reference
scLink: inferring sparse gene co-expression networks from single-cell expression data
10.1016/j.gpb.2020.11.006 · 2021 · External reference
CPAT: coding-potential assessment tool using an alignment-free logistic regression model
10.1093/nar/gkt006 · 2013 · External reference
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
10.1093/bioinformatics/bti042 · 2005 · External reference
Molecular traces of Drosophila hemocytes reveal transcriptomic conservation with vertebrate myeloid cells
10.1371/journal.pgen.1011077 · 2023 · External reference
High-confidence coding and noncoding transcriptome maps
10.1101/gr.214288.116 · 2017 · External reference
Massively parallel digital transcriptional profiling of single cells
10.1038/ncomms14049 · 2017 · External reference