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References from Deciphering genetic basis of phenylethanoid glycoside production through integrative multiomics analysis in Callicarpa nudiflora. Local targets link to admitted publications; unresolved targets remain external evidence.
An overview of the two-phase solvent systems used in the countercurrent separation of phenylethanoid glycosides and iridoids and their biological relevance
10.1007/s11101-019-09599-y · 2019 · External reference
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP plus and AUGUSTUS supported by a protein database
2021 · External reference
Phenylethanoid glycosides: research advances in their phytochemistry, pharmacological activity and pharmacokinetics
10.3390/molecules21080991 · 2016 · External reference
A review on the structure and pharmacological activity of phenylethanoid glycosides
10.1016/j.ejmech.2020.112563 · 2021 · External reference
Naturally occurring phenylethanoid glycosides: potential leads for new therapeutics
10.2174/092986708785908996 · 2008 · External reference
Construct phenylethanoid glycosides harnessing biosynthetic networks, protein engineering and one-pot multienzyme cascades
10.1002/anie.202402546 · 2024 · External reference
Characterisation of phenylethanoid glycosides by multiple-stage mass spectrometry
10.1002/rcm.8563 · 2020 · External reference
In vitro characterization of iridoid and phenylethanoid glycosides from Cistanche phelypaea for nutraceutical and pharmacological applications
10.1002/ptr.7548 · 2022 · External reference
Complete biosynthesis of the phenylethanoid glycoside verbascoside
10.1016/j.xplc.2023.100592 · 2023 · External reference
Complete pathway elucidation of echinacoside in Cistanche tubulosa and de novo biosynthesis of phenylethanoid glycosides
10.1038/s41467-025-56243-9 · 2025 · External reference
Discovery of glycosyltransferases insvolved in the biosynthesis of ligupurpuroside b
10.1021/acs.orglett.1c02873 · 2021 · External reference
The evolutionary fate and consequences of duplicate genes
10.1126/science.290.5494.1151 · 2000 · External reference
Origin and early evolution of the plant terpene synthase family
10.1073/pnas.2100361119 · 2022 · External reference
Pan-angiosperm analysis of the CLE signaling peptide gene family unveils paths, patterns, and predictions of paralog diversification
10.1093/molbev/msaf294 · 2025 · External reference
Biologically active natural products of the genus callicarpa
10.2174/157340708784533393 · 2008 · External reference
Research progress and preliminary study on biosynthesis of phenylethanoid glycosides in genus Callicarpa
2018 · External reference
Callicarpa nudiflora Hook. & Arn.: A comprehensive review of its phytochemistry and pharmacology
10.1016/j.jep.2020.113123 · 2021 · External reference
Unresolved reference
2020 · External reference
Simultaneous determination of acteoside and luteoloside in Callicarpa nudiflora from Hainan Province
2016 · External reference
Genome survey and characteristic analysis of SSR in Callicarpa nudiflora
2019 · External reference
HPLC determination of verbascoside in Callicarpa nudiflora
2012 · External reference
Multiomics comparison among populations of three plant sources of Amomi Fructus
10.1093/hr/uhad128 · 2023 · External reference
Multiple independent losses of the biosynthetic pathway for two tropane alkaloids in the Solanaceae family
10.1038/s41467-023-44246-3 · 2023 · External reference
Multiomics analyses of two Leonurus species illuminate leonurine biosynthesis and its evolution
10.1016/j.molp.2023.11.003 · 2024 · External reference
Large-scale whole-genome resequencing unravels the domestication history of Cannabis sativa
10.1126/sciadv.abg2286 · 2021 · External reference
Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects
10.1016/j.molp.2022.07.003 · 2022 · External reference
Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana
10.1093/gigascience/giaa093 · 2020 · External reference
TimeTree: A resource for timelines, timetrees, and divergence times
10.1093/molbev/msx116 · 2017 · External reference
The chromosome-based lavender genome provides new insights into Lamiaceae evolution and terpenoid biosynthesis
10.1038/s41438-021-00490-6 · 2021 · External reference
Whole-genome duplications and the long-term evolution of gene regulatory networks in Angiosperms
10.1093/molbev/msad141 · 2023 · External reference
Deciphering recursive polyploidization in Lamiales and reconstructing their chromosome evolutionary trajectories
10.1093/plphys/kiae151 · 2024 · External reference
Phytochemistry, bioactivities, and future prospects of Callicarpa nudiflora: a review
2022 · External reference
The chromosome-scale assembly of the Salvia rosmarinus genome provides insight into carnosic acid biosynthesis
10.1111/tpj.16087 · 2023 · External reference
Current advances in biosynthesis of acteoside
2021 · External reference
Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield
10.1016/j.molp.2022.05.013 · 2022 · External reference
Highly predictive genetic markers distinguish drug-type from fiber-type Cannabis sativa L
10.3390/plants8110496 · 2019 · External reference
Domesticated cannabinoid synthases amid a wild mosaic cannabis pangenome
10.1038/s41586-025-09065-0 · 2025 · External reference
Genome-wide variation patterns uncover the origin and selection in cultivated Ginseng (Panax ginseng Meyer)
10.1093/gbe/evx160 · 2017 · External reference
Deletion and tandem duplications of biosynthetic genes drive the diversity of triterpenoids in Aralia elata
10.1038/s41467-022-29908-y · 2022 · External reference
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
10.1101/gr.215087.116 · 2017 · External reference
Fast and accurate de novo genome assembly from long uncorrected reads
10.1101/gr.214270.116 · 2017 · External reference
NextPolish: a fast and efficient genome polishing tool for long-read assembly
10.1093/bioinformatics/btz891 · 2020 · External reference
Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments
10.1016/j.cels.2016.07.002 · 2016 · External reference
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
10.1126/science.aal3327 · 2017 · External reference
The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
10.1101/254797 · 2018 · External reference
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
10.1186/s13059-019-1905-y · 2019 · External reference
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations
10.1104/pp.113.230144 · 2014 · External reference
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
10.1038/nprot.2013.084 · 2013 · External reference
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
10.1186/s13059-019-1910-1 · 2019 · External reference
The genetic basis of sex determination in grapes
10.1038/s41467-020-16700-z · 2020 · External reference
The chromosome-level holly (Ilex latifolia) genome reveals key enzymes in triterpenoid saponin biosynthesis and fruit color change
2022 · External reference
De novo assembly of a new Olea europaea genome accession using nanopore sequencing
10.1038/s41438-021-00498-y · 2021 · External reference
Chromosome-level assembly and analysis of the Thymus genome provide insights into glandular secretory trichome formation and monoterpenoid biosynthesis in thyme
10.1016/j.xplc.2022.100413 · 2022 · External reference
Insights into salvianolic acid B biosynthesis from chromosome-scale assembly of the Salvia bowleyana genome
10.1111/jipb.13085 · 2021 · External reference
A near complete genome assembly of chia assists in identification of key fatty acid desaturases in developing seeds
10.3389/fpls.2023.1102715 · 2023 · External reference
Comparative genome analysis of Scutellaria baicalensis and Scutellaria barbata reveals the evolution of active flavonoid biosynthesis
10.1016/j.gpb.2020.06.002 · 2020 · External reference
AUGUSTUS: ab initio prediction of alternative transcripts
10.1093/nar/gkl200 · 2006 · External reference
Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
10.1093/nar/gku557 · 2014 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
10.1038/s41587-019-0201-4 · 2019 · External reference
Gene finding in novel genomes
10.1186/1471-2105-5-59 · 2004 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
10.1093/bioinformatics/btu033 · 2014 · External reference
PAML 4: Phylogenetic analysis by maximum likelihood
10.1093/molbev/msm088 · 2007 · External reference
TimeTree 5: an expanded resource for species divergence times
10.1093/molbev/msac174 · 2022 · External reference
CAFE 5 models variation in evolutionary rates among gene families
10.1093/bioinformatics/btaa1022 · 2020 · External reference
clusterProfiler: an R package for comparing biological themes among gene clusters
10.1089/omi.2011.0118 · 2012 · External reference
Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels
10.1038/ng.2484 · 2013 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
10.1101/gr.107524.110 · 2010 · External reference
PLINK: A tool set for whole-genome association and population-based linkage analyses
10.1086/519795 · 2007 · External reference
Fast model-based estimation of ancestry in unrelated individuals
10.1101/gr.094052.109 · 2009 · External reference
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
10.1093/bioinformatics/bty875 · 2019 · External reference
The variant call format and VCFtools
10.1093/bioinformatics/btr330 · 2011 · External reference
