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References from Widespread male–female expression imbalance of X-linked genes across phrynosomatid lizards. Local targets link to admitted publications; unresolved targets remain external evidence.
Corytophanids replaced the pleurodont XY system with a new pair of XY chromosomes
10.1093/gbe/evz196 · 2019 · External reference
Did lizards follow unique pathways in sex chromosome evolution?
10.3390/genes9050239 · 2018 · External reference
Sex-biased gene expression and evolution of the X chromosome in nematodes
10.1534/genetics.114.163311 · 2014 · External reference
The genome of the green anole lizard and a comparative analysis with birds and mammals
10.1038/nature10390 · 2011 · External reference
The genomic distribution of sex-biased genes in Drosophila serrata: X chromosome demasculinization, feminization, and hyperexpression in both sexes
10.1093/gbe/evt145 · 2013 · External reference
All iguana families with the exception of basilisks share sex chromosomes
10.1016/j.zool.2017.11.007 · 2018 · External reference
Basic local alignment search tool
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
Genomic signatures of adaptation in native lizards exposed to human-introduced fire ants
10.1038/s41467-024-55020-4 · 2025 · External reference
Are all sex chromosomes created equal?
10.1016/j.tig.2011.05.005 · 2011 · External reference
Characterization of a pericentric inversion in plateau fence lizards (Sceloporus tristichus): evidence from chromosome-scale genomes
10.1093/g3journal/jkab036 · 2021 · External reference
Controlling the false discovery rate: a practical and powerful approach to multiple testing
10.1111/j.2517-6161.1995.tb02031.x · 1995 · External reference
Dosage balance in gene regulation: biological implications
10.1016/j.tig.2005.02.010 · 2005 · External reference
Thermosensitive sex chromosome dosage compensation in ZZ/ZW softshell turtles, Apalone spinifera
10.1098/rstb.2020.0101 · 2021 · External reference
Fast and sensitive protein alignment using DIAMOND
10.1038/nmeth.3176 · 2015 · External reference
When and why does sex chromosome dosage compensation evolve?
10.1111/nyas.13307 · 2017 · External reference
Model for evolution of Y chromosomes and dosage compensation
10.1073/pnas.75.11.5618 · 1978 · External reference
HJ Muller and the relationship between sex chromosome degeneration and the evolution of dosage compensation
10.1093/gbe/evaf195 · 2025 · External reference
The timing of genetic degeneration of sex chromosomes
10.1098/rstb.2020.0093 · 2021 · External reference
The evolution of sex chromosome dosage compensation in animals
10.1016/j.jgg.2020.10.005 · 2020 · External reference
Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle
10.1038/ng.2890 · 2014 · External reference
Fastp: an ultra-fast all-in-one FASTQ preprocessor
10.1093/bioinformatics/bty560 · 2018 · External reference
Robust principal component analysis for accurate outlier sample detection in RNA-seq data
10.1186/s12859-020-03608-0 · 2020 · External reference
From reads to genes to pathways: differential expression analysis of RNA-seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
10.12688/f1000research.8987.2 · 2016 · External reference
Testosterone has opposite effects on male growth in lizards (Sceloporus spp.) with opposite patterns of sexual size dimorphism
10.1242/jeb.01948 · 2005 · External reference
Growing apart together: the development of contrasting sexual size dimorphisms in sympatric Sceloporus lizards
10.1655/0018-0831(2007)63[245:gattdo]2.0.co;2 · 2007 · External reference
Testosterone inhibits growth in juvenile male Eastern Fence Lizards (Sceloporus undulatus): implications for energy allocation and sexual size dimorphism
10.1086/430226 · 2005 · External reference
Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers
10.1073/pnas.1905298116 · 2019 · External reference
Chromosome-level genome assembly of the Blacktail Brush Lizard, Urosaurus nigricaudus, reveals dosage compensation in an endemic lizard
10.1093/gbe/evad210 · 2023 · External reference
Understanding the evolution of reptile chromosomes through applications of combined cytogenetics and genomics approaches
10.1159/000495974 · 2019 · External reference
The role of sex chromosomes in sexual dimorphism: discordance between molecular and phenotypic data
10.1111/jeb.12345 · 2014 · External reference
Dosage compensation of the sex chromosomes
10.1146/annurev-genet-110711-155454 · 2012 · External reference
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
10.1186/s13059-015-0721-2 · 2015 · External reference
OrthoFinder: phylogenetic orthology inference for comparative genomics
10.1186/s13059-019-1832-y · 2019 · External reference
MultiQC: summarize analysis results for multiple tools and samples in a single report
10.1093/bioinformatics/btw354 · 2016 · External reference
Sex chromosome evolution: so many exceptions to the rules
10.1093/gbe/evaa081 · 2020 · External reference
Restriction site-associated DNA sequencing (RAD-seq) reveals an extraordinary number of transitions among gecko sex-determining systems
10.1093/molbev/msv023 · 2015 · External reference
Chromosome-scale genome assembly of the brown anole (Anolis sagrei), an emerging model species
10.1038/s42003-022-04074-5 · 2022 · External reference
New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae)
10.1007/s00412-016-0585-6 · 2017 · External reference
Rsx is a metatherian RNA with Xist-like properties in X-chromosome inactivation
10.1038/nature11171 · 2012 · External reference
Evolution of vertebrate sex chromosomes and dosage compensation
10.1038/nrg.2015.2 · 2016 · External reference
Evolution of sex chromosome dosage compensation in animals: a beautiful theory, undermined by facts and bedeviled by details
10.1093/gbe/evx154 · 2017 · External reference
Conserved patterns of sex chromosome dosage compensation in the Lepidoptera (WZ/ZZ): insights from a moth neo-Z chromosome
10.1093/gbe/evx039 · 2017 · External reference
Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome
10.1093/gbe/evz053 · 2019 · External reference
Sex bias and dosage compensation in the zebra finch versus chicken genomes: general and specialized patterns among birds
10.1101/gr.102343.109 · 2010 · External reference
Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA
10.1007/s00438-016-1230-z · 2016 · External reference
A chromosome-level genome assembly and annotation of the desert horned lizard, Phrynosoma platyrhinos, provides insight into chromosomal rearrangements among reptiles
10.1093/gigascience/giab098 · 2022 · External reference
Sex chromosome evolution among amniotes: is the origin of sex chromosomes non-random?
10.1098/rstb.2020.0108 · 2021 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
Phylogenomics of a rapid radiation: is chromosomal evolution linked to increased diversification in north American spiny lizards (Genus Sceloporus)?
10.1186/s12862-016-0628-x · 2016 · External reference
Chromosome evolution and diversification in North American spiny lizards (genus Sceloporus)
10.1159/000293285 · 2009 · External reference
1000 genome project data processing subgroup. The sequence alignment/map format and SAMtools
10.1093/bioinformatics/btp352 · 2009 · External reference
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2013 · External reference
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
10.1093/nar/gkt214 · 2013 · External reference
Whole-chromosome fusions in the karyotype evolution of Sceloporus (Iguania, Reptilia) are more frequent in sex chromosomes than autosomes
10.1098/rstb.2020.0099 · 2021 · External reference
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
10.7554/elife.78526 · 2022 · External reference
Dosage compensation in Drosophila
10.1101/cshperspect.a019398 · 2015 · External reference
Unresolved reference
2013 · External reference
The W, X, Y and Z of sex-chromosome dosage compensation
10.1016/j.tig.2009.03.005 · 2009 · External reference
Sex chromosome dosage compensation: definitely not for everyone
10.1016/j.tig.2013.07.005 · 2013 · External reference
Are plant and animal sex chromosomes really all that different?
10.1098/rstb.2021.0218 · 2022 · External reference
All dosage compensation is local: gene-by-gene regulation of sex-biased expression on the chicken Z chromosome
10.1038/hdy.2008.116 · 2009 · External reference
Some inconvenient truths about sex chromosome dosage compensation and the potential role of sexual conflict
10.1111/j.1558-5646.2011.01316.x · 2011 · External reference
Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage
10.1101/gr.223727.117 · 2017 · External reference
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
10.1093/nar/gks042 · 2012 · External reference
Rapid evolution of complete dosage compensation in Poecilia
10.1093/gbe/evab155 · 2021 · External reference
Unresolved reference
2025 · External reference
Genomic origins and evolution of neo-sex chromosomes in Pacific Island birds
10.1073/pnas.2503746122 · 2025 · External reference
Effect of dosage changes of sex-linked genes, and the compensatory effect of other gene-differences between male and female
10.1002/ar.1090510407 · 1931 · External reference
Evolution of dosage compensation under sexual selection differs between X and Z chromosomes
10.1038/ncomms8720 · 2015 · External reference
Genomic imprinting mediates dosage compensation in a young plant XY system
10.1038/s41477-018-0221-y · 2018 · External reference
Escaping the evolutionary trap? Sex chromosome turnover in basilisks and related lizards (Corytophanidae: Squamata)
10.1098/rsbl.2019.0498 · 2019 · External reference
10.1007/978-3-642-88178-7
10.1007/978-3-642-88178-7 · 1967 · External reference
Y fuse? Sex chromosome fusions in fishes and reptiles
10.1371/journal.pgen.1005237 · 2015 · External reference
The evolution of X chromosome inactivation in mammals: the demise of Ohno's hypothesis?
10.1007/s00018-013-1499-6 · 2014 · External reference
A lizard is never late: squamate genomics as a recent catalyst for understanding sex chromosome and microchromosome evolution
10.1093/jhered/esad023 · 2023 · External reference
Hyperexpression of the X chromosome in both sexes results in extensive female bias of X-linked genes in the flour beetle
10.1093/gbe/evq024 · 2010 · External reference
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
10.1186/1471-2148-13-93 · 2013 · External reference
BEDTools: a flexible suite of utilities for comparing genomic features
10.1093/bioinformatics/btq033 · 2010 · External reference
Unresolved reference
2025 · External reference
Synaptonemal complex analysis of sex chromsomes in two species of Sceloporus
10.2307/1446497 · 1990 · External reference
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
10.1093/bioinformatics/btp616 · 2010 · External reference
Moderated statistical tests for assessing differences in tag abundance
10.1093/bioinformatics/btm453 · 2007 · External reference
Do male and female heterogamety really differ in expression regulation? Lack of global dosage balance in pygopodid geckos
10.1098/rstb.2020.0102 · 2021 · External reference
Conserved sex chromosomes across adaptively radiated Anolis lizards
10.1111/evo.12357 · 2014 · External reference
Evolution of dosage compensation does not depend on genomic background
10.1111/mec.15853 · 2021 · External reference
Cretaceous park of sex determination: sex chromosomes are conserved across iguanas
10.1098/rsbl.2013.1093 · 2014 · External reference
Shared ancient sex chromosomes in varanids, beaded lizards, and alligator lizards
10.1093/molbev/msz024 · 2019 · External reference
Evolution of dosage compensation in Anolis carolinensis, a reptile with XX/XY chromosomal sex determination
10.1093/gbe/evw263 · 2017 · External reference
Sex chromosome evolution: hallmarks and question marks
10.1093/molbev/msae218 · 2024 · External reference
The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes
10.1101/gr.240952.118 · 2019 · External reference
Spatial dynamics of evolving dosage compensation in a young sex chromosome system
10.1093/gbe/evv013 · 2015 · External reference
The evolution of gene regulation on sex chromosomes
10.1016/j.tig.2022.04.004 · 2022 · External reference
Gene dosage imbalances: action, reaction, and models
10.1016/j.tibs.2015.03.011 · 2015 · External reference
Numerous transitions of sex chromosomes in Diptera
10.1371/journal.pbio.1002078 · 2015 · External reference
Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation
10.1371/journal.pbio.1001643 · 2013 · External reference
Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution
10.1073/pnas.1217027110 · 2013 · External reference
Lack of dosage balance and incomplete dosage compensation in the ZZ/ZW Gila Monster (Heloderma suspectum) revealed by de novo genome assembly
10.1093/gbe/evae018 · 2024 · External reference
A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
10.1093/gigascience/giab066 · 2021 · External reference
Battle of the sexes: conflict over dosage-sensitive genes and the origin of X chromosome inactivation
10.1073/pnas.1202905109 · 2012 · External reference
