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References from Non-coding RNAs and DNA methylation in plants. Local targets link to admitted publications; unresolved targets remain external evidence.
Human DNA methylomes at base resolution show widespread epigenomic differences
10.1038/nature08514 · 2009 · External reference
Global epigenomic reconfiguration during mammalian brain development
10.1126/science.1237905 · 2013 · External reference
Essential role for de novo DNA methyltransferase DNMT3a in paternal and maternal imprinting
10.1038/nature02633 · 2004 · External reference
Stability and flexibility of epigenetic gene regulation in mammalian development
10.1038/nature05918 · 2007 · External reference
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
10.1038/nature06745 · 2008 · External reference
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
10.1016/j.cell.2008.03.029 · 2008 · External reference
Patterns of population epigenomic diversity
10.1038/nature11968 · 2013 · External reference
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
10.1101/gr.152538.112 · 2013 · External reference
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
10.1186/1471-2164-13-300 · 2012 · External reference
RNA-directed de novo methylation of genomic sequences in plants
10.1016/0092-8674(94)90119-8 · 1994 · External reference
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
10.1016/j.cell.2008.09.035 · 2008 · External reference
Establishing, maintaining and modifying DNA methylation patterns in plants and animals.
10.1038/nrg2719 · 2010 · External reference
RNA–DNA interactions and DNA methylation in post-transcriptional gene silencing
1999 · External reference
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
10.1016/j.cell.2005.02.007 · 2005 · External reference
Role of RNA polymerase IV in plant small RNA metabolism
10.1073/pnas.0611456104 · 2007 · External reference
RNA polymerase IV directs silencing of endogenous DNA
10.1126/science.1106910 · 2005 · External reference
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV
10.1371/journal.pgen.1002195 · 2011 · External reference
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
10.1105/tpc.107.051540 · 2007 · External reference
A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development
10.1101/gad.1851809 · 2009 · External reference
RNA-directed DNA methylation and plant development require an IWR1-type transcription factor
10.1038/embor.2009.246 · 2010 · External reference
Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1
10.1038/nature12178 · 2013 · External reference
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
10.1016/j.molcel.2012.09.027 · 2012 · External reference
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
10.1016/j.cell.2006.05.031 · 2006 · External reference
Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis
10.1016/j.cub.2005.07.029 · 2005 · External reference
Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes
10.1016/j.molcel.2012.04.013 · 2012 · External reference
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
10.1038/ng.365 · 2009 · External reference
Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis
10.1101/gad.1868009 · 2009 · External reference
Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
10.1016/j.cub.2004.04.037 · 2004 · External reference
A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in Arabidopsis
10.1016/j.cub.2010.03.062 · 2010 · External reference
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
10.1038/nature09025 · 2010 · External reference
A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
10.1038/ng.119 · 2008 · External reference
DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons
10.1038/nsmb.2354 · 2012 · External reference
SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation
2014 · External reference
The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci
10.1371/journal.pgen.1003948 · 2014 · External reference
The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs
10.1093/nar/gkt639 · 2013 · External reference
Independent chromatin binding of ARGONAUTE4 and SPT5L/KTF1 mediates transcriptional gene silencing
10.1371/journal.pgen.1002120 · 2011 · External reference
An effector of RNA-directed DNA methylation in Arabidopsis is an ARGONAUTE 4- and RNA-binding protein
10.1016/j.cell.2009.04.028 · 2009 · External reference
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis
10.1073/pnas.1206638109 · 2012 · External reference
A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing
10.1016/j.molcel.2012.11.011 · 2013 · External reference
Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
10.1016/s0960-9822(02)00925-9 · 2002 · External reference
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
10.1105/tpc.109.072199 · 2010 · External reference
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
10.1038/nature05198 · 2006 · External reference
Arabidopsis MET1 cytosine methyltransferase mutants
10.1093/genetics/163.3.1109 · 2003 · External reference
Plant DNA methyltransferases
10.1023/a:1006427226972 · 2000 · External reference
VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization
10.1101/gad.1512007 · 2007 · External reference
Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis
10.1371/journal.pgen.1000156 · 2008 · External reference
Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA
10.1016/j.pep.2012.03.003 · 2012 · External reference
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
10.1016/j.cell.2012.10.054 · 2013 · External reference
DNMT1-interacting RNAs block gene-specific DNA methylation
10.1038/nature12598 · 2013 · External reference
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
10.1016/j.cell.2012.07.034 · 2012 · External reference
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
10.1126/science.1059745 · 2001 · External reference
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
10.1371/journal.pone.0003156 · 2008 · External reference
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
10.1038/emboj.2010.227 · 2010 · External reference
The SRA methyl-cytosine-binding domain links DNA and histone methylation
10.1016/j.cub.2007.01.009 · 2007 · External reference
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
10.1126/science.1150987 · 2008 · External reference
An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites
10.1038/emboj.2009.59 · 2009 · External reference
Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana
10.1371/journal.pgen.1002350 · 2011 · External reference
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
10.1016/j.cell.2013.02.033 · 2013 · External reference
DNA demethylation in the Arabidopsis genome
10.1073/pnas.0701861104 · 2007 · External reference
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
10.1016/s0092-8674(02)01133-9 · 2002 · External reference
A histone acetyltransferase regulates active DNA demethylation in Arabidopsis
10.1126/science.1219416 · 2012 · External reference
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation
10.1073/pnas.0603563103 · 2006 · External reference
A DNA 3′ phosphatase functions in active DNA demethylation in Arabidopsis
10.1016/j.molcel.2011.11.034 · 2012 · External reference
DNA demethylation by DNA repair
10.1016/j.tig.2008.12.001 · 2009 · External reference
The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation
10.1074/jbc.m112.427617 · 2013 · External reference
ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis
10.1038/nature07305 · 2008 · External reference
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
10.1016/j.cell.2008.12.038 · 2009 · External reference
Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis
10.1371/journal.pbio.0060194 · 2008 · External reference
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis
10.1016/s0092-8674(02)00807-3 · 2002 · External reference
DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation
10.1016/j.cell.2005.12.034 · 2006 · External reference
Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
10.1126/science.1224839 · 2012 · External reference
siRNAs and DNA methylation: seedy epigenetics
10.1016/j.tplants.2010.01.002 · 2010 · External reference
Uniparental expression of Pol IV-dependent siRNAs in developing endosperm of Arabidopsis
10.1038/nature08084 · 2009 · External reference
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
10.1101/gr.153510.112 · 2013 · External reference
A regular and continuing conversion-type phenomenon at the b locus in maize
10.1073/pnas.45.6.828 · 1959 · External reference
Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation
10.1101/gad.1006702 · 2002 · External reference
The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation
10.1111/j.1365-313x.2010.04245.x · 2010 · External reference
An RNA-dependent RNA polymerase is required for paramutation in maize
10.1038/nature04884 · 2006 · External reference
Transgenerational epigenetic instability is a source of novel methylation variants
10.1126/science.1212959 · 2011 · External reference
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
10.1038/nature10555 · 2011 · External reference
Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus
10.1126/science.1203919 · 2011 · External reference
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice
10.1016/j.molcel.2008.09.003 · 2008 · External reference
Genome-wide identification of polycomb-associated RNAs by RIP-seq
10.1016/j.molcel.2010.12.011 · 2010 · External reference
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
10.1038/nbt.1873 · 2011 · External reference
Atypical RNA polymerase subunits required for RNA-directed DNA methylation
10.1038/ng1580 · 2005 · External reference
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
10.1101/gad.348405 · 2005 · External reference
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1
10.1126/science.1074950 · 2002 · External reference
SRA-domain proteins required for DRM2-mediated de novo DNA methylation
10.1371/journal.pgen.1000280 · 2008 · External reference
Genome-wide profiling and analysis of Arabidopsis siRNAs
10.1371/journal.pbio.0050057 · 2007 · External reference
Genetic and functional diversification of small RNA pathways in plants
10.1371/journal.pbio.0020104 · 2004 · External reference
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
10.1126/science.1079695 · 2003 · External reference
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana
10.1038/nsmb.1690 · 2009 · External reference
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
10.1038/nature731 · 2002 · External reference
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
10.1105/tpc.106.041400 · 2006 · External reference
A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo
10.1101/gad.1980311 · 2011 · External reference
Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks
10.1007/s11103-008-9346-0 · 2008 · External reference
