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References from Successful predictive modeling of pollen fitness phenotypes is enabled by measures of expression specificity. Local targets link to admitted publications; unresolved targets remain external evidence.
Predicting mRNA abundance directly from genomic sequence using deep convolutional neural networks
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We aren’t good at picking candidate genes, and it's slowing us down
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Evolutionary genomics of plant gametophytic selection
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Unresolved reference
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Pollen proteomics: from stress physiology to developmental priming
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Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays)
10.1002/tpg2.20015 · 2020 · External reference
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Artificial intelligence in plant breeding
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Post-transcriptional regulation across human tissues
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Maize defective kernel mutant generated by insertion of a Ds element in a gene encoding a highly conserved TTI2 cochaperone
10.1073/pnas.1703498114 · 2017 · External reference
Dynamics of the pollen sequestrome defined by subcellular coupled omics
10.1104/pp.18.00648 · 2018 · External reference
Reproduction multitasking: the male gametophyte
10.1146/annurev-arplant-080620-021907 · 2021 · External reference
Prioritizing candidate eQTL causal genes in Arabidopsis using RANDOM FORESTS
10.1093/g3journal/jkac255 · 2022 · External reference
Natural variations and genome-wide association studies in crop plants
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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
10.1126/science.abg5289 · 2021 · External reference
The evolutionary consequences of selection at the haploid gametic stage
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QTG-Finder: a machine-learning based algorithm to prioritize causal genes of quantitative trait loci in Arabidopsis and rice
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QTG-Finder2: a generalized machine-learning algorithm for prioritizing QTL causal genes in plants
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Characteristics of plant essential genes allow for within- and between-species prediction of lethal mutant phenotypes
10.1105/tpc.15.00051 · 2015 · External reference
Bonnmu: a sequence-indexed resource of transposon-induced maize mutations for functional genomics studies
10.1104/pp.20.00478 · 2020 · External reference
Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures
10.1105/tpc.114.125617 · 2014 · External reference
TIPR: transcription initiation pattern recognition on a genome scale
10.1093/bioinformatics/btv464 · 2015 · External reference
Gametophyte genome activation occurs at pollen mitosis I in maize
10.1126/science.abl7392 · 2022 · External reference
Characterization and prediction of haploinsufficiency using systems-level gene properties in yeast
10.1534/g3.113.008144 · 2013 · External reference
The Brassica mature pollen and stigma proteomes: preparing to meet
10.1111/tpj.15219 · 2021 · External reference
Spatial inheritance patterns across maize ears are associated with alleles that reduce pollen fitness
10.1111/tpj.70760 · 2026 · External reference
Genes and gene models, an important distinction
10.1111/nph.16011 · 2020 · External reference
Maize feature store: a centralized resource to manage and analyze curated maize multi-omics features for machine learning applications
10.1093/database/baad078 · 2023 · External reference
Status and prospects of genome-wide association studies in plants
10.1002/tpg2.20077 · 2021 · External reference
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Pollen production, pollination dynamics, and kernel set in maize
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Precision phenotyping in crop science: from plant traits to gene discovery for climate-smart agriculture
10.1111/pbr.13228 · 2024 · External reference
Integration of omic networks in a developmental atlas of maize
10.1126/science.aag1125 · 2016 · External reference
Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize
10.1186/s12870-019-2218-8 · 2020 · External reference
A computer vision-based approach for high-throughput automated analysis of Arabidopsis seedling phenotypes
10.1093/plphys/kiaf275 · 2025 · External reference
Prediction of plant complex traits via integration of multi-omics data
10.1038/s41467-024-50701-6 · 2024 · External reference
High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements
10.1371/journal.pgen.1008462 · 2020 · External reference
Expanding the BonnMu sequence-indexed repository of transposon induced maize (Zea mays L.) mutations in dent and flint germplasm
10.1111/tpj.17088 · 2024 · External reference
A pan-genomic approach to genome databases using maize as a model system
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10.1093/bioinformatics/btab604 · 2021 · External reference
Genome-wide association studies in maize: praise and stargaze
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InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data
10.1186/1471-2164-14-679 · 2013 · External reference
Identification of haploinsufficient genes from epigenomic data using deep forest
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Exploitation of next generation sequencing technologies for unraveling metabolic pathways in medicinal plants: a concise review
10.1016/j.indcrop.2022.114669 · 2022 · External reference
Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes
10.1093/nar/gkaa370 · 2020 · External reference
Germline development and fertilization mechanisms in maize
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