Research graph
References from Integrating Fossils Samples with Heterogeneous Diversification Rates: A Combined Multi-Type Fossilized Birth-Death model. Local targets link to admitted publications; unresolved targets remain external evidence.
The occurrence birth–death process for combined-evidence analysis in macroevolution and epidemiology
10.1093/sysbio/syac037 · 2022 · External reference
Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death process
10.1098/rspb.2019.0685 · 2019 · External reference
FossilSim: An R package for simulating fossil occurrence data under mechanistic models of preservation and recovery
10.1111/2041-210x.13170 · 2019 · External reference
Ignoring fossil age uncertainty leads to inaccurate topology and divergence time estimates in time calibrated tree inference
10.3389/fevo.2020.00183 · 2020 · External reference
A multitype birth death model for bayesian inference of lineage-specific birth and death rates
10.1093/sysbio/syaa016 · 2020 · External reference
Putting the F into FBD analysis: tree constraints or morphological data?
10.1111/pala.12679 · 2023 · External reference
Fossils do not substantially improve, and may even harm, estimates of diversification rate heterogeneity
10.1093/sysbio/syac049 · 2023 · External reference
Biodiversity across space and time in the fossil record
10.1016/j.cub.2021.07.071 · 2021 · External reference
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
10.1371/journal.pcbi.1006650 · 2019 · External reference
Overlapping codon model, phylogenetic clustering, and alternative partial expectation conditional maximization algorithm
2011 · External reference
Evolution of cranial telescoping in echolocating whales (Cetacea: Odontoceti)
10.1111/evo.13480 · 2018 · External reference
Rocks and clocks: calibrating the tree of life using fossils and molecules
10.1016/j.tree.2007.05.005 · 2007 · External reference
Diversitree: comparative phylogenetic analyses of diversification in R
10.1111/j.2041-210x.2012.00234.x · 2012 · External reference
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration
10.1371/journal.pcbi.1003919 · 2014 · External reference
Bayesian total-evidence dating reveals the recent crown radiation of penguins
2017 · External reference
Morphological evidence for the phylogeny of Cetacea
10.1023/a:1025552007291 · 2003 · External reference
Rates and rocks: strengths and weaknesses of molecular dating methods
10.3389/fgene.2020.00526 · 2020 · External reference
Sampling trees from evolutionary models
10.1093/sysbio/syq026 · 2010 · External reference
The fossilized birth-death process for coherent calibration of divergence-time estimates
10.1073/pnas.1319091111 · 2014 · External reference
RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language
10.1093/sysbio/syw021 · 2016 · External reference
A Bayesian approach for estimating branch-specific speciation and extinction rates
10.1101/555805 · 2019 · External reference
hdrcde: Highest Density Regions and Conditional Density Estimation
2021 · External reference
Interspecific geographic range size-body size relationship and the diversification dynamics of Neotropical furnariid birds
10.1111/evo.13481 · 2018 · External reference
Phylodynamics with migration: a computational framework to quantify population structure from genomic data
10.1093/molbev/msw064 · 2016 · External reference
Climate and host-plant associations shaped the evolution of ceutorhynch weevils throughout the Cenozoic
10.1111/evo.13520 · 2018 · External reference
A likelihood approach to estimating phylogeny from discrete morphological character data
10.1080/106351501753462876 · 2001 · External reference
Unifying phylogenetic birth–death models in epidemiology and macroevolution
10.1093/sysbio/syab049 · 2021 · External reference
Estimating a binary character’s effect on speciation and extinction
10.1080/10635150701607033 · 2007 · External reference
A model with many small shifts for estimating species-specific diversification rates
10.1038/s41559-019-0908-0 · 2019 · External reference
Fast and accurate estimation of species-specific diversification rates using data augmentation
10.1093/sysbio/syab055 · 2022 · External reference
Cetacean Paleobiology
10.1002/9781118561546 · 2016 · External reference
Inferring diversification rate variation from phylogenies with fossils
10.1093/sysbio/syy035 · 2019 · External reference
Phylogenetic approaches for studying diversification
10.1111/ele.12251 · 2014 · External reference
Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues
10.1016/j.tree.2022.02.004 · 2022 · External reference
Phylogenetic insights into diversification
10.1146/annurev-ecolsys-102722-020508 · 2024 · External reference
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
10.1093/bioinformatics/btu181 · 2014 · External reference
An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology
10.1111/nyas.12157 · 2013 · External reference
Coda: convergence diagnosis and output analysis for mcmc
2006 · External reference
Imbalanced speciation pulses sustain the radiation of mammals
10.1126/science.adj2793 · 2024 · External reference
Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation
10.1038/ncomms2958 · 2013 · External reference
Colonial history and global economics distort our understanding of deep-time biodiversity
10.1038/s41559-021-01608-8 · 2022 · External reference
Comparison of phylogenetic trees
10.1016/0025-5564(81)90043-2 · 1981 · External reference
Closing the gap between rocks and clocks using total-evidence dating
10.1098/rstb.2015.0136 · 2016 · External reference
Closing the gap between palaeontological and neontological speciation and extinction rate estimates
10.1038/s41467-018-07622-y · 2018 · External reference
Sampling-through-time in birth–death trees
10.1016/j.jtbi.2010.09.010 · 2010 · External reference
Recovering speciation and extinction dynamics based on phylogenies
10.1111/jeb.12139 · 2013 · External reference
The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
10.1016/j.jtbi.2018.03.005 · 2018 · External reference
Decoding Genomes: From Sequences to Phylodynamics
2024 · External reference
Radiation of extant cetaceans driven by restructuring of the oceans
10.1093/sysbio/syp060 · 2009 · External reference
Validating Bayesian inference algorithms with simulation-based calibration
2018 · External reference
The fossilized birth–death model is identifiable
10.1093/sysbio/syae058 · 2025 · External reference
Diversity estimates, biases, and historiographic effects: resolving cetacean diversity in the Tertiary
2007 · External reference
A flexible method for estimating tip diversification rates across a range of speciation and extinction scenarios
10.1111/evo.14517 · 2022 · External reference
RWTY (R We There Yet): An R Package for examining convergence of Bayesian phylogenetic analyses
10.1093/molbev/msw279 · 2017 · External reference
Total-evidence dating under the fossilized birth–death process
10.1093/sysbio/syv080 · 2016 · External reference
