Research graph
References from Evolving View on Phylogenetic Networks. Local targets link to admitted publications; unresolved targets remain external evidence.
One thousand plant transcriptomes and the phylogenomics of green plants
10.1038/s41586-019-1693-2 · 2019 · External reference
Nanuq: a method for inferring species networks from gene trees under the coalescent model
10.1186/s13015-019-0159-2 · 2019 · External reference
Identifiability of species network topologies from genomic sequences using the logdet distance
10.1007/s00285-022-01734-2 · 2022 · External reference
Gene tree discord, simplex plots, and statistical tests under the coalescent
10.1093/sysbio/syab008 · 2022 · External reference
The tree of blobs of a species network: identifiability under the coalescent
10.1007/s00285-022-01838-9 · 2023 · External reference
Identifiability of level-1 species networks from gene tree quartets
10.1007/s11538-024-01339-4 · 2024 · External reference
Tinnik: inference of the tree of blobs of a species network under the coalescent model
10.1186/s13015-024-00266-2 · 2024 · External reference
Nanuq+: a divide-and-conquer approach to network estimation
10.1186/s13015-025-00274-w · 2024 · External reference
Beyond level-1: Identifiability of a class of galled tree-child networks
10.1007/s11538-025-01545-8 · 2025 · External reference
Unresolved reference
2018 · External reference
Unresolved reference
2025 · External reference
Anomalous networks under the multispecies coalescent: theory and prevalence
10.1007/s00285-024-02050-7 · 2024 · External reference
Distinguishing level-2 phylogenetic networks using phylogenetic invariants
2021 · External reference
Mitochondrial portraits of human populations using median networks
10.1093/genetics/141.2.743 · 1995 · External reference
Median-joining networks for inferring intraspecific phylogenies
10.1093/oxfordjournals.molbev.a026036 · 1999 · External reference
Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtdna
10.1006/mpev.2000.0792 · 2000 · External reference
A canonical decomposition theory for metrics on a finite set
10.1016/0001-8708(92)90061-o · 1992 · External reference
Split decomposition: a new and useful approach to phylogenetic analysis of distance data
10.1016/1055-7903(92)90021-8 · 1992 · External reference
Identifying species network features from gene tree quartets under the coalescent model
10.1007/s11538-018-0485-4 · 2019 · External reference
Networks: expanding evolutionary thinking
10.1016/j.tig.2013.05.007 · 2013 · External reference
Treeknit: Inferring ancestral reassortment graphs of influenza viruses
10.1371/journal.pcbi.1010394 · 2022 · External reference
Statistical learning with phylogenetic network invariants
10.48550/arxiv.2211.11919 · 2022 · External reference
Phylogenetic comparative methods on phylogenetic networks with reticulations
10.1093/sysbio/syy033 · 2018 · External reference
Concordance trees, concordance factors, and the exploration of reticulate genealogy
10.1002/tax.562013 · 2007 · External reference
Detectability of varied hybridization scenarios using genome-scale hybrid detection methods
2024 · External reference
Phylogenetic trees and networks can serve as powerful and complementary approaches for analysis of genomic data
10.1093/sysbio/syz056 · 2020 · External reference
Hyde: a python package for genome-scale hybridization detection
10.1093/sysbio/syy023 · 2018 · External reference
Unifying vertical and nonvertical evolution: a stochastic arg-based framework
10.1093/sysbio/syp076 · 2010 · External reference
Lost in space? generalising subtree prune and regraft to spaces of phylogenetic networks
10.1016/j.jtbi.2017.03.032 · 2017 · External reference
Neighbornet: improved algorithms and implementation
10.3389/fbinf.2023.1178600 · 2023 · External reference
Neighbor-net: an agglomerative method for the construction of phylogenetic networks
10.1093/molbev/msh018 · 2004 · External reference
Practical aspects of phylogenetic network analysis using phylonet
2019 · External reference
The impact of model misspecification on phylogenetic network inference
2024 · External reference
A distance metric for a class of tree-sibling phylogenetic networks
10.1093/bioinformatics/btn231 · 2008 · External reference
Metrics for phylogenetic networks i: Generalizations of the robinson-foulds metric
10.1109/tcbb.2008.70 · 2008 · External reference
Metrics for phylogenetic networks ii: Nodal and triplets metrics
10.1109/tcbb.2008.127 · 2008 · External reference
Counting and enumerating tree-child networks and their subclasses
10.1016/j.jcss.2020.06.001 · 2020 · External reference
Evolving covid-19 conundrum and its impact
10.1073/pnas.2007076117 · 2020 · External reference
Invariants for level-1 phylogenetic networks under the cavendar-farris-neyman model
10.1016/j.aam.2023.102633 · 2024 · External reference
Modeling hybridization under the network multispecies coalescent
10.1093/sysbio/syy040 · 2018 · External reference
The distribution of waiting distances in ancestral recombination graphs
10.1016/j.tpb.2021.06.003 · 2021 · External reference
Misspecification strikes: Astral can mislead in the presence of hybridization, even for nonanomalous scenarios
10.1093/molbev/msaf049 · 2025 · External reference
Advances in computational methods for phylogenetic networks in the presence of hybridization
2019 · External reference
Identifiability of phylogenetic level-2 networks under the jukes-cantor model
2025 · External reference
A class of phylogenetic networks reconstructable from ancestral profiles
10.1016/j.mbs.2019.04.009 · 2019 · External reference
Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony
10.1093/genetics/136.1.343 · 1994 · External reference
Unrooted non-binary tree-based phylogenetic networks
10.1016/j.dam.2021.01.005 · 2021 · External reference
The space of tree-based phylogenetic networks
10.1007/s11538-020-00744-9 · 2020 · External reference
Networks and viral evolution
10.1007/pl00000059 · 1997 · External reference
A bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis
10.1093/molbev/msz296 · 2020 · External reference
Efficient bayesian inference under the multispecies coalescent with migration
10.1073/pnas.2310708120 · 2023 · External reference
Phylocoalsimulations: a simulator for network multispecies coalescent models, including a new extension for the inheritance of gene flow
10.1093/sysbio/syad030 · 2023 · External reference
Identifying climatic drivers of hybridization with a new ancestral niche reconstruction method
10.1093/sysbio/syad018 · 2023 · External reference
Phylogenetic network analysis of sars-cov-2 genomes
10.1073/pnas.2004999117 · 2020 · External reference
Tree-based unrooted phylogenetic networks
10.1007/s11538-017-0381-3 · 2018 · External reference
Normalising phylogenetic networks
10.1016/j.ympev.2021.107215 · 2021 · External reference
Summary tests of introgression are highly sensitive to rate variation across lineages
10.1093/sysbio/syad056 · 2023 · External reference
Invariants for level-1 phylogenetic networks under the random walk 4-state markov model
2024 · External reference
Reconstructing semi-directed level-1 networks using few quarnets
10.1016/j.jcss.2025.103655 · 2025 · External reference
The structure of level-k phylogenetic networks
10.1007/978-3-642-02441-2_26 · 2009 · External reference
Quartets and unrooted phylogenetic networks
10.1142/s0219720012500047 · 2012 · External reference
Uprooted phylogenetic networks
10.1007/s11538-017-0318-x · 2017 · External reference
Rearrangement moves on rooted phylogenetic networks
10.1371/journal.pcbi.1005611 · 2017 · External reference
On encodings of phylogenetic networks of bounded level
10.1007/s00285-011-0456-y · 2012 · External reference
Distinguishing level-1 phylogenetic networks on the basis of data generated by markov processes
10.1007/s00285-021-01653-8 · 2021 · External reference
10.1137/17m1134238 · 2018 · Admitted local publication
Qnet: an agglomerative method for the construction of phylogenetic networks from weighted quartets
10.1093/molbev/msl180 · 2007 · External reference
A three-sample test for introgression
10.1093/molbev/msz178 · 2019 · External reference
Transformations to simplify phylogenetic networks
10.1007/s11538-024-01398-7 · 2025 · External reference
Fastnet: fast and accurate statistical inference of phylogenetic networks using large-scale genomic sequence data
2018 · External reference
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of drosophila pseudoobscura and d. persimilis
10.1534/genetics.103.024182 · 2004 · External reference
The timing and direction of introgression under the multispecies network coalescent
10.1534/genetics.118.301831 · 2019 · External reference
Distinguishing between histories of speciation and introgression using genomic data
10.18061/bssb.v3i1.9227 · 2024 · External reference
Phylogenomic approaches to detecting and characterizing introgression
10.1093/genetics/iyab173 · 2022 · External reference
Squirrel: Reconstructing semi-directed phylogenetic level-1 networks from four-leaved networks or sequence alignments
10.1093/molbev/msaf067 · 2025 · External reference
A practical algorithm for reconstructing level-1 phylogenetic networks
10.1109/tcbb.2010.17 · 2010 · External reference
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations
10.1007/s00285-015-0899-7 · 2016 · External reference
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets
10.1007/s00453-015-0069-8 · 2017 · External reference
Quarnet inference rules for level-1 networks
10.1007/s11538-018-0450-2 · 2018 · External reference
Computing consensus networks for collections of 1-nested phylogenetic networks
10.7155/jgaa.00633 · 2023 · External reference
When are quarnets sufficient to reconstruct semi-directed phylogenetic networks?
2024 · External reference
Encoding and constructing 1-nested phylogenetic networks with trinets
10.1007/s00453-012-9659-x · 2013 · External reference
Constructing semi-directed level-1 phylogenetic networks from quarnets
2019 · External reference
Splitstree: analyzing and visualizing evolutionary data
1998 · External reference
Phylogenetic networks: concepts, algorithms and applications
10.1017/cbo9780511974076 · 2010 · External reference
Application of phylogenetic networks in evolutionary studies
10.1093/molbev/msj030 · 2006 · External reference
The splitstree app: interactive analysis and visualization using phylogenetic trees and networks
10.1038/s41592-024-02406-3 · 2024 · External reference
A survey of combinatorial methods for phylogenetic networks
10.1093/gbe/evq077 · 2011 · External reference
Dendroscope 3: an interactive tool for rooted phylogenetic trees and networks
10.1093/sysbio/sys062 · 2012 · External reference
Heading in the right direction? using head moves to traverse phylogenetic network space
2018 · External reference
Exploring the tiers of rooted phylogenetic network space using tail moves
10.1007/s11538-018-0452-0 · 2018 · External reference
Algorithms for combining rooted triplets into a galled phylogenetic network
10.1137/s0097539704446529 · 2006 · External reference
Trait evolution on phylogenetic networks
10.1101/023986 · 2015 · External reference
The impact of cross-species gene flow on species tree estimation
10.1093/sysbio/syaa001 · 2020 · External reference
Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow
10.1093/nsr/nwab127 · 2021 · External reference
Haplotype networks can be misleading in the presence of missing data
10.1080/10635150701633153 · 2007 · External reference
Bayesian phylogenetic analysis for diploid and allotetraploid species networks
10.1101/129361 · 2017 · External reference
Statistical inference of allopolyploid species networks in the presence of incomplete lineage sorting
10.1093/sysbio/syt012 · 2013 · External reference
Efficiently inferring the demographic history of many populations with allele count data
10.1080/01621459.2019.1635482 · 2020 · External reference
Reticulate evolution helps explain apparent homoplasy in floral biology and pollination in baobabs (adansonia; bombacoideae; malvaceae)
10.1093/sysbio/syz073 · 2020 · External reference
Reconstructing a phylogenetic level-1 network from quartets
10.1007/s11538-014-0022-z · 2014 · External reference
On the elusiveness of clusters
10.1109/tcbb.2011.128 · 2011 · External reference
A method for massively scalable phylogenetic network inference
10.1101/2025.05.05.652278 · 2025 · External reference
Classes of explicit phylogenetic networks and their biological and mathematical significance
10.1007/s00285-022-01746-y · 2022 · External reference
Phylogenetic networks empower biodiversity research
10.1073/pnas.2410934122 · 2025 · External reference
Inference of phylogenetic networks from sequence data using composite likelihood
10.1093/sysbio/syae054 · 2025 · External reference
Comparative performance of popular methods for hybrid detection using genomic data
10.1093/sysbio/syaa092 · 2021 · External reference
Towards reliable detection of introgression in the presence of among-species rate variation
10.1093/sysbio/syae028 · 2024 · External reference
An evolving view of species tree inference
10.1093/sysbio/syag002 · 2026 · External reference
The structure of scientific revolutions
1962 · External reference
The influence of gene flow on species tree estimation: a simulation study
10.1093/sysbio/syt049 · 2014 · External reference
Reconstruction of biogeographic and evolutionary networks using reticulograms
10.1080/10635150252899725 · 2002 · External reference
Popart: full-feature software for haplotype network construction
10.1111/2041-210x.12410 · 2015 · External reference
D gen: a test statistic for detection of general introgression scenarios
2018 · External reference
Network (reticulate) evolution: biology, models, and algorithms
2004 · External reference
Caterpillars on three and four leaves are sufficient to reconstruct binary normal networks
10.1007/s00285-020-01533-7 · 2020 · External reference
Exploring spaces of semi-directed level-1 networks
10.1007/s00285-023-02004-5 · 2023 · External reference
Applying f4-statistics and admixture graphs: Theory and examples
10.1111/1755-0998.13230 · 2020 · External reference
Efficient moment-based inference of admixture parameters and sources of gene flow
10.1093/molbev/mst099 · 2013 · External reference
Inferring admixture histories of human populations using linkage disequilibrium
10.1534/genetics.112.147330 · 2013 · External reference
The effect of gene flow on coalescent-based species-tree inference
10.1093/sysbio/syy020 · 2018 · External reference
Netrax: accurate and fast maximum likelihood phylogenetic network inference
10.1093/bioinformatics/btac396 · 2022 · External reference
Phylogenomic signatures of ancient introgression in a rogue lineage of darters (teleostei: Percidae)
10.1093/sysbio/syy074 · 2019 · External reference
On the limits of fitting complex models of population history to f-statistics
10.7554/elife.85492 · 2023 · External reference
T-rex: reconstructing and visualizing phylogenetic trees and reticulation networks
10.1093/bioinformatics/17.7.664 · 2001 · External reference
Modelling phylogenetic relationships using reticulated networks
10.1111/j.1463-6409.2004.00141.x · 2004 · External reference
Phylogenetic network construction approaches
10.1016/s1874-5334(06)80006-7 · 2006 · External reference
From a phylogenetic tree to a reticulated network
10.1089/106652704773416966 · 2004 · External reference
Rf-net 2: Fast inference of virus reassortment and hybridization networks
10.1093/bioinformatics/btac075 · 2022 · External reference
Algebraic invariants for inferring 4-leaf semi-directed phylogenetic networks
10.1101/2023.09.11.557152 · 2023 · External reference
Sampling bias and incorrect rooting make phylogenetic network tracing of sars-cov-2 infections unreliable
10.1073/pnas.2007295117 · 2020 · External reference
A dissimilarity measure for semidirected networks
10.1109/tcbbio.2025.3534780 · 2025 · External reference
Species delimitation, phylogenomics, and biogeography of sulawesi flying lizards: A diversification history complicated by ancient hybridization, cryptic species, and arrested speciation
10.1093/sysbio/syad020 · 2023 · External reference
Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model
10.1016/j.tpb.2008.10.004 · 2009 · External reference
Applications of machine learning in phylogenetics
10.1016/j.ympev.2024.108066 · 2024 · External reference
Evidence that myotis lucifugus “subspecies” are five nonsister species, despite gene flow
10.1093/sysbio/syy010 · 2018 · External reference
Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in amaranthaceae sl
10.1093/sysbio/syaa066 · 2021 · External reference
Networks in phylogenetic analysis: new tools for population biology
10.1016/j.ijpara.2005.02.007 · 2005 · External reference
Efficient inference of recent and ancestral recombination within bacterial populations
10.1093/molbev/msx066 · 2017 · External reference
A cubic-time algorithm for computing the trinet distance between level-1 networks
10.1016/j.ipl.2017.03.002 · 2017 · External reference
Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses
10.1073/pnas.1918304117 · 2020 · External reference
A bayesian approach to infer recombination patterns in coronaviruses
10.1038/s41467-022-31749-8 · 2022 · External reference
Phylogenomic discordance is driven by wide-spread introgression and incomplete lineage sorting during rapid species diversification within rattlesnakes (viperidae: Crotalus and sistrurus)
10.1093/sysbio/syae018 · 2024 · External reference
A metric on the space of reduced phylogenetic networks
10.1109/tcbb.2009.2 · 2009 · External reference
Evolutionary phylogenetic networks: models and issues
10.1007/978-0-387-09760-2_7 · 2010 · External reference
Bayesian inference of admixture graphs on native american and arctic populations
10.1371/journal.pgen.1010410 · 2023 · External reference
Implementing large genomic single nucleotide polymorphism data sets in phylogenetic network reconstructions: a case study of particularly rapid radiations of cichlid fish
10.1093/sysbio/syaa005 · 2020 · External reference
Trilonet: piecing together small networks to reconstruct reticulate evolutionary histories
10.1093/molbev/msw068 · 2016 · External reference
Analysis of haplotype networks: The randomized minimum spanning tree method
10.1111/2041-210x.12969 · 2018 · External reference
Reconstructible phylogenetic networks: do not distinguish the indistinguishable
10.1371/journal.pcbi.1004135 · 2015 · External reference
Ancient admixture in human history
10.1534/genetics.112.145037 · 2012 · External reference
Detection and polarization of introgression in a five-taxon phylogeny
10.1093/sysbio/syv023 · 2015 · External reference
A likelihood ratio test for hybridization under the multispecies coalescent
2024 · External reference
Admixture, population structure, and f-statistics
10.1534/genetics.115.183913 · 2016 · External reference
Inference of population splits and mixtures from genome-wide allele frequency data
10.1371/journal.pgen.1002967 · 2012 · External reference
Tripnet: a method for constructing rooted phylogenetic networks from rooted triplets
10.1371/journal.pone.0106531 · 2014 · External reference
Complex hybridization in a clade of polytypic salamanders (plethodontidae: Desmognathus) uncovered by estimating higher-level phylogenetic networks
10.1093/sysbio/syae060 · 2025 · External reference
On the inference of complex phylogenetic networks by markov chain monte-carlo
10.1371/journal.pcbi.1008380 · 2021 · External reference
The multispecies coalescent model and species tree inference
2020 · External reference
Bayes estimation of species divergence times and ancestral population sizes using dna sequences from multiple loci
10.1093/genetics/164.4.1645 · 2003 · External reference
Rpnch: A method for constructing rooted phylogenetic networks from rooted triplets based on height function
2017 · External reference
Mscquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in r
10.1093/bioinformatics/btaa868 · 2021 · External reference
Identifying circular orders for blobs in phylogenetic networks
10.1016/j.aam.2024.102804 · 2025 · External reference
Median-joining network analysis of sars-cov-2 genomes is neither phylogenetic nor evolutionary
10.1073/pnas.2007062117 · 2020 · External reference
Phylogenomics reveals patterns of ancient hybridization and differential diversification that contribute to phylogenetic conflict in willows, poplars, and close relatives
10.1093/sysbio/syad042 · 2023 · External reference
tanggle: An R package for the visualization of phylogenetic networks
10.1002/aps3.70060 · 2025 · External reference
Inferring species trees under extensive horizontal gene transfer: insights from simulated and empirical data
10.24072/pci.mcb.100408 · 2025 · External reference
Phylogenetics
10.1093/oso/9780198509424.001.0001 · 2003 · External reference
Trinets encode orchard phylogenetic networks
10.1007/s00285-021-01654-7 · 2021 · External reference
Inconsistency of species tree methods under gene flow
10.1093/sysbio/syw030 · 2016 · External reference
Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting
10.1371/journal.pgen.1005896 · 2016 · External reference
ggret: An r package for visualising and manipulating tree-based phylogenetic networks
10.21105/joss.07773 · 2025 · External reference
Joint inference of migration and reassortment patterns for viruses with segmented genomes
10.1093/molbev/msab342 · 2022 · External reference
Impact of data error on phylogenetic network inference from gene trees under the multispecies network coalescent
10.1007/978-1-0716-4836-0_4 · 2025 · External reference
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and dna sequence data. iii. cladogram estimation
10.1093/genetics/132.2.619 · 1992 · External reference
Accounting for intraspecific variation in continuous trait evolution on a reticulate phylogeny
2023 · External reference
Leveraging graphical model techniques to study evolution on phylogenetic networks
10.1098/rstb.2023.0310 · 2025 · External reference
Full-likelihood genomic analysis clarifies a complex history of species divergence and introgression: the example of the erato-sara group of heliconius butterflies
10.1093/sysbio/syac009 · 2022 · External reference
Ghost lineages highly influence the interpretation of introgression tests
10.1093/sysbio/syac011 · 2022 · External reference
Ghost lineages can invalidate or even reverse findings regarding gene flow
10.1371/journal.pbio.3001776 · 2022 · External reference
Constructing level-2 phylogenetic networks from triplets
10.1109/tcbb.2009.22 · 2009 · External reference
Uniqueness, intractability and exact algorithms: reflections on level-k phylogenetic networks
10.1142/s0219720009004308 · 2009 · External reference
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters
10.1093/bioinformatics/btq202 · 2010 · External reference
Binets: fundamental building blocks for phylogenetic networks
10.1007/s11538-017-0275-4 · 2017 · External reference
An algorithm for reconstructing level-2 phylogenetic networks from trinets
10.1016/j.ipl.2022.106300 · 2022 · External reference
Trinets encode tree-child and level-2 phylogenetic networks
2014 · External reference
Leaf-reconstructibility of phylogenetic networks
10.1137/17m1111930 · 2018 · External reference
Inferring ancestral recombination graphs from bacterial genomic data
10.1534/genetics.116.193425 · 2017 · External reference
Lnetwork: an efficient and effective method for constructing phylogenetic networks
10.1093/bioinformatics/btt378 · 2013 · External reference
Bimlr: A method for constructing rooted phylogenetic networks from rooted phylogenetic trees
10.1016/j.gene.2013.06.036 · 2013 · External reference
Advances in estimating level-1 phylogenetic networks from unrooted snps
10.1089/cmb.2024.0710 · 2025 · External reference
Bayesian inference of reticulate phylogenies under the multispecies network coalescent
10.1371/journal.pgen.1006006 · 2016 · External reference
Inferring phylogenetic networks using phylonet
10.1093/sysbio/syy015 · 2018 · External reference
A new efficient algorithm for inferring explicit hybridization networks following the neighbor-joining principle
10.1142/s0219720014500243 · 2014 · External reference
Building explicit hybridization networks using the maximum likelihood and neighbor-joining approaches
2018 · External reference
Ultrafast learning of four-node hybridization cycles in phylogenetic networks using algebraic invariants
10.1093/bioadv/vbae014 · 2024 · External reference
Identifiability of local and global features of phylogenetic networks from average distances
10.1007/s00285-022-01847-8 · 2023 · External reference
Phylogenetic network dissimilarity measures that take branch lengths into account
10.1007/978-3-031-06220-9_6 · 2022 · External reference
Quartet-net: a quartet-based method to reconstruct phylogenetic networks
10.1093/molbev/mst040 · 2013 · External reference
The bpp program for species tree estimation and species delimitation
10.1093/czoolo/61.5.854 · 2015 · External reference
The explosive radiation of the neotropical tillandsia subgenus tillandsia (bromeliaceae) has been accompanied by pervasive hybridization
10.1093/sysbio/syaf039 · 2025 · External reference
Evaluation of methods for estimating coalescence times using ancestral recombination graphs
10.1093/genetics/iyac044 · 2022 · External reference
The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection
10.1371/journal.pgen.1002660 · 2012 · External reference
Maximum Likelihood Inference of Reticulate Evolutionary Histories
10.1073/pnas.1407950111 · 2014 · External reference
A distance-based method for inferring phylogenetic networks in the presence of incomplete lineage sorting
10.1007/978-3-319-19048-8_32 · 2015 · External reference
A maximum pseudo-likelihood approach for phylogenetic networks
10.1186/1471-2164-16-s10-s10 · 2015 · External reference
Flurf, an automated flu virus reassortment finder based on phylogenetic trees
10.1109/bibm.2010.5706632 · 2010 · External reference
Bayesian inference of species networks from multilocus sequence data
10.1093/molbev/msx307 · 2018 · External reference
In the light of deep coalescence: revisiting trees within networks
10.1186/s12859-016-1269-1 · 2016 · External reference
Bayesian inference of phylogenetic networks from bi-allelic genetic markers
10.1371/journal.pcbi.1005932 · 2018 · External reference
Inference of species phylogenies from bi-allelic markers using pseudo-likelihood
10.1093/bioinformatics/bty295 · 2018 · External reference
Displayed trees do not determine distinguishability under the network multispecies coalescent
2017 · External reference
