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References from Parent-of-origin effects on allelic expression bias in interspecific poplar hybrids. Local targets link to admitted publications; unresolved targets remain external evidence.
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
10.1093/nar/25.17.3389 · 1997 · External reference
Environmentally robust cis-regulatory changes underlie rapid climatic adaptation
10.1073/pnas.2214614120 · 2023 · External reference
Safeguarding crop photosynthesis in a rapidly warming world
10.1126/science.adv5413 · 2025 · External reference
TrimmomatiC: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
MotifSuite: workflow for probabilistic motif detection and assessment
10.1093/bioinformatics/bts293 · 2012 · External reference
Unresolved reference
2011 · External reference
Cottonwood hybridization affects tannin and nitrogen content of leaf litter and alters decomposition
10.1007/s004420050994 · 2000 · External reference
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
10.1186/s13059-015-0721-2 · 2015 · External reference
New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array
10.1111/1755-0998.12513 · 2016 · External reference
Extent and patterns of hybridization among the three species of Populus that constitute the riparian forest of southern Alberta, Canada
10.1139/b03-135 · 2004 · External reference
Haplotype-based variant detection from short-read sequencing
External reference
Condensed tannins are inducible antioxidants and protect hybrid poplar against oxidative stress
10.1093/treephys/tpy143 · 2019 · External reference
MYB134-RNAi poplar plants show reduced tannin synthesis in leaves but not roots, and increased susceptibility to oxidative stress
10.1093/jxb/eraa371 · 2020 · External reference
Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids
10.1093/treephys/25.12.1475 · 2005 · External reference
A comparative analysis of phenylpropanoid metabolism, N utilization, and carbon partitioning in fast- and slow-growing Populus hybrid clones
10.1093/jxb/erp180 · 2009 · External reference
Condensed tannin biosynthesis and polymerization synergistically condition carbon use, defense, sink strength and growth in Populus
10.1093/treephys/tpt097 · 2013 · External reference
Molecular and evolutionary processes generating variation in gene expression
10.1038/s41576-020-00304-w · 2021 · External reference
Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae)
10.1111/nph.12956 · 2014 · External reference
Variation of the physical and mechanical properties of hybrid poplar clones
10.15376/biores.9.1.1456-1471 · 2014 · External reference
Breeding polyploid Populus: progress and perspective
10.48130/fr-2022-0004 · 2022 · External reference
Genetic analysis of an interspecific hybrid swarm of Populus: occurrence of unidirectional introgression
10.1093/genetics/123.3.557 · 1989 · External reference
Phytomelatonin and secondary metabolites: operative strategies to induce plant abiotic stress tolerance
10.1016/j.stress.2025.101178 · 2026 · External reference
10.1007/978-3-031-50787-8_10
10.1007/978-3-031-50787-8_10 · 2024 · External reference
Scaling read aligners to hundreds of threads on general-purpose processors
10.1093/bioinformatics/bty648 · 2018 · External reference
CpG islands as gene markers in the human genome
10.1016/0888-7543(92)90024-m · 1992 · External reference
Parental DNA methylation states are associated with heterosis in epigenetic hybrids
10.1104/pp.17.01054 · 2017 · External reference
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
10.1186/1471-2105-12-323 · 2011 · External reference
Unresolved reference
2013 · External reference
Transcriptional control of flavonoid biosynthesis
10.4161/psb.27522 · 2014 · External reference
Three-step biosynthesis of salicylic acid from benzoyl-CoA in plants
10.1038/s41586-025-09185-7 · 2025 · External reference
Salicylic acid biosynthesis via the PAL pathway requires benzaldehyde synthase and a benzyl salicylate-specific esterase
10.1093/plcell/koaf241 · 2025 · External reference
Genetical metabolomics of flavonoid biosynthesis in Populus: a case study
10.1111/j.1365-313x.2006.02786.x · 2006 · External reference
Growth performance and stability of hybrid poplar clones in simultaneous tests on six sites
10.1016/j.biombioe.2018.08.007 · 2018 · External reference
limma powers differential expression analyses for RNA-Sequencing and microarray studies
10.1093/nar/gkv007 · 2015 · External reference
Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra
10.1186/s12864-018-5239-z · 2018 · External reference
AlleleSeq: analysis of allele-specific expression and binding in a network framework
10.1038/msb.2011.54 · 2011 · External reference
From genes to ecosystems: the genetic basis of condensed tannins and their role in nutrient regulation in a Populus model system
10.1007/s10021-008-9173-9 · 2008 · External reference
Qualitative variation in proanthocyanidin composition of Populus species and hybrids: genetics is the key
10.1007/s10886-010-9887-y · 2011 · External reference
Gene body methylation regulates gene expression and mediates phenotypic diversity in natural Arabidopsis populations
10.1038/s41477-025-02108-4 · 2025 · External reference
Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis
10.1073/pnas.1820513116 · 2019 · External reference
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize
10.1105/tpc.107.052258 · 2007 · External reference
10.1007/978-1-4419-1541-2_14
10.1007/978-1-4419-1541-2_14 · 2010 · External reference
JCVI: a versatile toolkit for comparative genomics analysis
10.1002/imt2.211 · 2024 · External reference
Genetics as a key to improving crop photosynthesis
10.1093/jxb/erac076 · 2022 · External reference
Integrative regulatory network of plant thylakoid energy transduction
10.1016/j.tplants.2013.09.003 · 2014 · External reference
Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus
10.1111/j.1469-8137.2006.01798.x · 2006 · External reference
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
10.1126/science.1128691 · 2006 · External reference
Salicylic acid activates poplar defense against the biotrophic rust fungus Melampsora larici-populina via increased biosynthesis of catechin and proanthocyanidins
10.1111/nph.15396 · 2019 · External reference
Lack of antagonism between salicylic acid and jasmonate signalling pathways in poplar
10.1111/nph.18148 · 2022 · External reference
The diversity of salicylic acid biosynthesis and defense signaling in plants: knowledge gaps and future opportunities
10.1016/j.pbi.2023.102349 · 2023 · External reference
Allele-specific expression and chromatin accessibility contribute to heterosis in tea plants (Camellia sinensis)
10.1111/tpj.16004 · 2022 · External reference
Deciphering phenylalanine-derived salicylic acid biosynthesis in plants
10.1038/s41586-025-09280-9 · 2025 · External reference
Temporospatial hierarchy and allele-specific expression of zygotic genome activation revealed by distant interspecific urochordate hybrids
10.1038/s41467-024-46780-0 · 2024 · External reference
Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence
10.1038/nrg3095 · 2012 · External reference
Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes
10.1016/j.tplants.2014.12.001 · 2015 · External reference
Exploiting genome variation to improve next-generation sequencing data analysis and genome editing efficiency in Populus tremula × alba 717-1B4
10.1007/s11295-015-0907-5 · 2015 · External reference
Genetic mechanism of adaptive evolution: the example of adaptation to high altitudes
2022 · External reference
clusterProfiler: an R package for comparing biological themes among gene clusters
10.1089/omi.2011.0118 · 2012 · External reference
Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis
10.1073/pnas.0906869106 · 2009 · External reference
PlantCAD2: A DNA foundation model for interpreting genomes across flowering plants
10.1016/j.xgen.2026.101329 · External reference
Effects of parental genetic divergence on gene expression patterns in interspecific hybrids of Camellia
10.1186/s12864-019-6222-z · 2019 · External reference
The genetic diversity of half-sib family progenies of Populus (Section Leuce) in Altai of Xinjiang
2013 · External reference
Complete biosynthesis of salicylic acid from phenylalanine in plants
10.1038/s41586-025-09175-9 · 2025 · External reference
