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References from Identification of expressed endogenous retroviral element associated long terminal repeats in devil facial tumour cells. Local targets link to admitted publications; unresolved targets remain external evidence.
Quantifying 25 years of disease-caused declines in Tasmanian devil populations: host density drives spatial pathogen spread
10.1111/ele.13703 · 2021 · External reference
Allograft theory: transmission of devil facial-tumour disease
10.1038/439549a · 2006 · External reference
A second transmissible cancer in Tasmanian devils
10.1073/pnas.1519691113 · 2016 · External reference
The evolution of two transmissible cancers in Tasmanian devils
10.1126/science.abq6453 · 2023 · External reference
Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)
10.1007/s00018-019-03259-2 · 2019 · External reference
An oral bait vaccination approach for the Tasmanian devil facial tumor diseases
10.1080/14760584.2020.1711058 · 2020 · External reference
A human adenovirus encoding IFN-γ can transduce Tasmanian devil facial tumour cells and upregulate MHC-I
10.1099/jgv.0.001812 · 2022 · External reference
Regression of devil facial tumour disease following immunotherapy in immunised Tasmanian devils
10.1038/srep43827 · 2017 · External reference
Towards new horizons: characterization, classification and implications of the tumour antigenic repertoire
10.1038/s41571-020-0387-x · 2020 · External reference
The origin and immune recognition of tumor-specific antigens
10.3390/cancers12092607 · 2020 · External reference
Alternative tumour-specific antigens
10.1038/s41568-019-0162-4 · 2019 · External reference
MHC-I-presented non-canonical antigens expand the cancer immunotherapy targets in acute myeloid leukemia
10.1038/s41597-024-03660-y · 2024 · External reference
Noncoding regions are the main source of targetable tumor-specific antigens
10.1126/scitranslmed.aau5516 · 2018 · External reference
Human endogenous retroviruses and cancer
10.20892/j.issn.2095-3941.2016.0080 · 2016 · External reference
Activation of human endogenous retroviruses and its physiological consequences
10.1038/s41580-023-00674-z · 2024 · External reference
Human endogenous retroviruses are ancient acquired elements still shaping innate immune responses
10.3389/fimmu.2018.02039 · 2018 · External reference
Silencing and transcriptional regulation of endogenous retroviruses: an overview
10.3390/v12080884 · 2020 · External reference
Human endogenous retroviruses in cancer: oncogenesis mechanisms and clinical implications
10.1002/jmv.28350 · 2023 · External reference
LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly
10.1101/gr.248922.119 · 2019 · External reference
Increased expression of peptides from non-coding genes in cancer proteomics datasets suggests potential tumor neoantigens
10.1038/s42003-021-02007-2 · 2021 · External reference
NovumRNA: accurate prediction of non-canonical tumor antigens from RNA sequencing data
10.1016/j.isci.2025.113448 · 2025 · External reference
Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil
10.1093/molbev/msv017 · 2015 · External reference
The devil is in the details: transposable element analysis of the Tasmanian devil genome
10.1080/2159256x.2015.1119926 · 2016 · External reference
Invasion and amplification of endogenous retroviruses in Dasyuridae marsupial genomes
10.1093/molbev/msae160 · 2024 · External reference
Unresolved reference
External reference
Transcriptome and proteome profiling reveals stress-induced expression signatures of imiquimod-treated Tasmanian devil facial tumor disease (DFTD) cells
2018 · External reference
NLRC5 regulates expression of MHC-I and provides a target for anti-tumor immunity in transmissible cancers
10.1007/s00432-021-03601-x · 2021 · External reference
FastQC: a quality control tool for high throughput sequence data
2010 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
10.1093/bioinformatics/btt656 · 2014 · External reference
GC-content normalization for RNA-seq data
10.1186/1471-2105-12-480 · 2011 · External reference
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R
10.1093/bioinformatics/btw777 · 2017 · External reference
limma powers differential expression analyses for RNA-sequencing and microarray studies
10.1093/nar/gkv007 · 2015 · External reference
ggplot2
10.1002/wics.147 · 2011 · External reference
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
10.1186/gb-2014-15-2-r29 · 2014 · External reference
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
10.1093/bioinformatics/btw313 · 2016 · External reference
samtools faidx: indexes or queries regions from a fasta file
2019 · External reference
Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
10.1038/ncomms10238 · 2016 · External reference
Non-AUG translation initiation in mammals
10.1186/s13059-022-02674-2 · 2022 · External reference
Non-AUG translation: a new start for protein synthesis in eukaryotes
10.1101/gad.305250.117 · 2017 · External reference
orfipy: a fast and flexible tool for extracting ORFs
10.1093/bioinformatics/btab090 · 2021 · External reference
The immunopeptidomes of two transmissible cancers and their host have a common, dominant peptide motif
10.1111/imm.13307 · 2021 · External reference
Matplotlib: a 2D graphics environment
10.1109/mcse.2007.55 · 2007 · External reference
The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
10.1126/science.1180616 · 2010 · External reference
Tumor-specific diagnostic marker for transmissible facial tumors of Tasmanian devils
10.1177/0300985811400447 · 2011 · External reference
The role of human endogenous retroviruses in the initiation and progression of melanoma
10.3390/biomedicines13071662 · 2025 · External reference
Similarities and differences in CD4+ and CD8+ effector and memory T cell generation
10.1038/ni969 · 2003 · External reference
Non-canonical antigens are the largest fraction of peptides presented by MHC class I in mismatch repair deficient murine colorectal cancer
10.1186/s13073-023-01275-3 · 2024 · External reference
Targeting peptide antigens using a multiallelic MHC I-binding system
10.1038/s41587-024-02505-8 · 2024 · External reference
Uncovering the peptide-binding specificities of HLA-C: a general strategy to determine the specificity of any MHC class I molecule
10.4049/jimmunol.1401689 · 2014 · External reference
Supplementary material from: Identification of expressed endogenous retroviral element associated long terminal repeats in devil facial tumour cells
2026 · External reference
