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References from Developmental divergence in gene regulation underlies trophic innovation in Lake Victoria cichlids. Local targets link to admitted publications; unresolved targets remain external evidence.
Evolution at two levels in humans and chimpanzees
10.1126/science.1090005 · 1975 · External reference
The evolutionary landscape of alternative splicing in vertebrate species
10.1126/science.1230612 · 2012 · External reference
Evolutionary dynamics of gene and isoform regulation in mammalian tissues
10.1126/science.1228186 · 2012 · External reference
Ancestral splice variation is substrate for rapid diversification in African cichlids
10.1073/pnas.2516477123 · 2026 · External reference
Phylogenomics of trophically diverse cichlids disentangles processes driving adaptive radiation and repeated trophic transitions
10.1002/ece3.9077 · 2022 · External reference
Gene expression dynamics during rapid organismal diversification in African cichlid fishes
10.1038/s41559-020-01354-3 · 2020 · External reference
The role of alternative splicing and differential gene expression in cichlid adaptive radiation
10.1093/gbe/evx204 · 2017 · External reference
Ecological speciation promoted by divergent regulation of functional genes within African cichlid fishes
10.1093/molbev/msac251 · 2022 · External reference
The importance of alternative splicing in adaptive evolution
10.1111/mec.16377 · 2022 · External reference
Gene expression across mammalian organ development
10.1038/s41586-019-1338-5 · 2019 · External reference
Comparing adaptive radiations across space, time, and taxa
10.1093/jhered/esz064 · 2020 · External reference
Adaptive evolution and explosive speciation: the cichlid fish model
10.1038/nrg1316 · 2004 · External reference
The holocene history of Lake Victoria
10.1579/0044-7447-29.1.2 · 2000 · External reference
Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids
10.1126/science.ade2833 · 2023 · External reference
Unresolved reference
1972 · External reference
Causes and consequences of ontogenetic dietary shifts: a global synthesis using fish models
10.1111/brv.12468 · 2019 · External reference
Competition among small individuals hinders adaptive radiation despite ecological opportunity
10.1098/rspb.2021.2655 · 2022 · External reference
Why do some lineages radiate while others do not? Perspectives for future research on adaptive radiations
10.1101/cshperspect.a041448 · 2024 · External reference
Shaping of the lower jaw bone during growth of Nile tilapia Oreochromis niloticus and a Lake Victoria cichlid Haplochromis chilotes: a geometric morphometric approach
10.1111/j.1440-169x.2008.01063.x · 2008 · External reference
Divergence in larval jaw gene expression reflects differential trophic adaptation in haplochromine cichlids prior to foraging
10.1186/s12862-019-1483-3 · 2019 · External reference
Foraging-induced craniofacial plasticity is associated with an early, robust and dynamic transcriptional response
10.1098/rspb.2024.0215 · 2024 · External reference
Development of the embryo, larva and early juvenile of Nile tilapia Oreochromis niloticus (Pisces: Cichlidae). Developmental staging system
10.1111/j.1440-169x.2007.00926.x · 2007 · External reference
Unresolved reference
1996 · External reference
Highly modular genomic architecture underlies combinatorial mechanism of speciation and adaptive radiation
2025 · External reference
A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions
10.1186/s12864-017-3723-5 · 2017 · External reference
SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions
10.1186/s13059-018-1417-1 · 2018 · External reference
Developmental and osteoarthritic changes in Col6a1-knockout mice: biomechanics of type VI collagen in the cartilage pericellular matrix
10.1002/art.24293 · 2009 · External reference
The role of gene expression in ecological speciation
10.1111/j.1749-6632.2010.05765.x · 2010 · External reference
Gene regulation and speciation
10.1016/j.tig.2016.11.003 · 2017 · External reference
Diet composition and feeding habits of fish larvae of five species in the Burullus Lake, Egypt
10.1007/s41208-024-00677-3 · 2024 · External reference
Human CMP-N-acetylneuraminic acid hydroxylase is a novel stem cell marker linked to stem cell-specific mechanisms
10.1002/stem.250 · 2009 · External reference
Signalling pathways in trophic skeletal development and morphogenesis: insights from studies on teleost fish
10.1016/j.ydbio.2016.10.003 · 2016 · External reference
Wnt signalling underlies the evolution of new phenotypes and craniofacial variability in Lake Malawi cichlids
10.1038/ncomms4629 · 2014 · External reference
Simplet/Fam53b is required for Wnt signal transduction by regulating β-catenin nuclear localization
10.1242/dev.108415 · 2014 · External reference
Mutations in Bcl9 and Pygo genes cause congenital heart defects by tissue-specific perturbation of Wnt/β-catenin signaling
10.1101/gad.315531.118 · 2018 · External reference
Aryl hydrocarbon receptor-mediated down-regulation of Sox9b causes jaw malformation in zebrafish embryos
10.1124/mol.108.050435 · 2008 · External reference
A pair of sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development
10.1242/dev.01674 · 2005 · External reference
Comparative analysis of osteoblast gene expression profiles and Runx2 genomic occupancy of mouse and human osteoblasts in vitro
10.1016/j.gene.2017.05.028 · 2017 · External reference
An ancient gene network is co-opted for teeth on old and new jaws
10.1371/journal.pbio.1000031 · 2009 · External reference
Progranulin and a five transmembrane domain-containing receptor-like gene are the key components in receptor activator of nuclear factor κB (RANK)-dependent formation of multinucleated osteoclasts
10.1074/jbc.m114.608786 · 2015 · External reference
KCNE4 juxtamembrane region is required for interaction with calmodulin and for functional suppression of KCNQ1
10.1074/jbc.m110.158865 · 2011 · External reference
The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches
10.1038/nature04843 · 2006 · External reference
Revisiting de Beer's textbook example of heterochrony and jaw elongation in fish: calmodulin expression reflects heterochronic growth, and underlies morphological innovation in the jaws of belonoid fishes
10.1186/2041-9139-5-8 · 2014 · External reference
Roles for Bmp4 and CaM1 in shaping the jaw: evo-devo and beyond
10.1146/annurev-genet-102808-114917 · 2009 · External reference
Requirement for frzb and fzd7a in cranial neural crest convergence and extension mechanisms during zebrafish palate and jaw morphogenesis
10.1016/j.ydbio.2013.06.012 · 2013 · External reference
Roles of Wnt pathway genes wls, wnt9a, wnt5b, frzb and gpc4 in regulating convergent-extension during zebrafish palate morphogenesis
2016 · External reference
Paternal origin of FGFR2 mutations in sporadic cases of Crouzon syndrome and Pfeiffer syndrome
10.1086/302831 · 2000 · External reference
Mutations in the fibroblast growth factor receptor 2 gene cause Crouzon syndrome
10.1038/ng0994-98 · 1994 · External reference
Biting into the genome to phenome map: developmental genetic modularity of cichlid fish dentitions
10.1093/icb/icw059 · 2016 · External reference
The birth of new exons: mechanisms and evolutionary consequences
10.1261/rna.682507 · 2007 · External reference
Exonization of transposed elements: a challenge and opportunity for evolution
10.1016/j.biochi.2011.07.014 · 2011 · External reference
Kazrin, and its binding partners ARVCF- and delta-catenin, are required for Xenopus laevis craniofacial development
10.1002/dvdy.22721 · 2011 · External reference
Mechanism and regulation of the nonsense-mediated decay pathway
10.1093/nar/gkw010 · 2016 · External reference
Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish
10.1111/mec.15817 · 2021 · External reference
The interplay of temperature and genotype on patterns of alternative splicing in Drosophila melanogaster
10.1534/genetics.116.192310 · 2016 · External reference
Single-cell sequencing : a sharp sword for deciphering biological innovations and evolutionary adaptations in lower vertebrates and invertebrates
10.1111/raq.70073 · 2025 · External reference
FastQC: a quality control tool for high throughput sequence data
2010 · External reference
Trimmomatic: a flexible trimmer for Illumina sequence data
10.1093/bioinformatics/btu170 · 2014 · External reference
STAR: ultrafast universal RNA-seq aligner
10.1093/bioinformatics/bts635 · 2013 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
Unresolved reference
2026 · External reference
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
10.1038/nbt.3122 · 2015 · External reference
GFF utilities: GffRead and GffCompare
10.12688/f1000research.23297.1 · 2020 · External reference
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
10.1186/s13059-014-0550-8 · 2014 · External reference
Unresolved reference
2020 · External reference
Unresolved reference
2019 · External reference
edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets
10.1093/nar/gkaf018 · 2025 · External reference
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
10.1093/bioinformatics/bti525 · 2005 · External reference
Mapping identifiers for the integration of genomic datasets with the R/bioconductor package biomaRt
10.1038/nprot.2009.97 · 2009 · External reference
topGO: enrichment analysis for gene ontology
External reference
Unresolved reference
2026 · External reference
Developmental divergence in gene regulation underlies trophic innovation in Lake Victoria cichlids
External reference
