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References from Low Levels of Amino Acid Auxotrophy Among Environmental Pseudomonas Isolates. Local targets link to admitted publications; unresolved targets remain external evidence.
Construction of Escherichia coli K‐12 In‐Frame, Single‐Gene Knockout Mutants: The Keio Collection
10.1038/msb4100050 · 2006 · External reference
Siderophore Cheating and Cheating Resistance Shape Competition for Iron in Soil and Freshwater Pseudomonas Communities
10.1038/s41467-017-00509-4 · 2017 · External reference
Local Adaptation, Geographical Distance and Phylogenetic Relatedness: Assessing the Drivers of Siderophore‐Mediated Social Interactions in Natural Bacterial Communities
10.1111/jeb.13883 · 2021 · External reference
Environmental Determinants of Pyoverdine Production, Exploitation and Competition in Natural Pseudomonas Communities
10.1111/1462-2920.14355 · 2018 · External reference
Ecology and Evolution of Metabolic Cross‐Feeding Interactions in Bacteria
10.1039/c8np00009c · 2018 · External reference
Less Is More: Selective Advantages Can Explain the Prevalent Loss of Biosynthetic Genes in Bacteria
10.1111/evo.12468 · 2014 · External reference
OrthoFinder: Phylogenetic Orthology Inference for Comparative Genomics
10.1186/s13059-019-1832-y · 2019 · External reference
Siderophores Drive Invasion Dynamics in Bacterial Communities Through Their Dual Role as Public Good Versus Public Bad
10.1111/ele.13912 · 2022 · External reference
Competition, Not Cooperation, Dominates Interactions Among Culturable Microbial Species
10.1016/j.cub.2012.08.005 · 2012 · External reference
Selectivity in Mammalian Extinction Risk and Threat Types: A New Measure of Phylogenetic Signal Strength in Binary Traits
10.1111/j.1523-1739.2010.01455.x · 2010 · External reference
Community Diversity and Habitat Structure Shape the Repertoire of Extracellular Proteins in Bacteria
10.1038/s41467-020-14572-x · 2020 · External reference
The Ecology and Evolution of Microbial Competition
10.1016/j.tim.2016.06.011 · 2016 · External reference
Microbial Diversity—Exploration of Natural Ecosystems and Microbiomes
10.1016/j.gde.2015.10.003 · 2015 · External reference
Metabolic Dissimilarity Determines the Establishment of Cross‐Feeding Interactions in Bacteria
10.1016/j.cub.2021.10.019 · 2021 · External reference
Prevalent Emergence of Reciprocity Among Cross‐Feeding Bacteria
10.1038/s43705-022-00155-y · 2022 · External reference
Emergent Simplicity in Microbial Community Assembly
10.1126/science.aat1168 · 2018 · External reference
The Evolution and Ecology of Bacterial Warfare
10.1016/j.cub.2019.04.024 · 2019 · External reference
Valine‐Induced Isoleucine Starvation in Escherichia coli K‐12 Studied by Spike‐In Normalized RNA Sequencing
10.3389/fgene.2020.00144 · 2020 · External reference
Evolution of Bidirectional Costly Mutualism From Byproduct Consumption
10.1073/pnas.1810949115 · 2018 · External reference
Ecological Dependencies and the Illusion of Cooperation in Microbial Communities
2024 · External reference
Metabolic Specialization and the Assembly of Microbial Communities
10.1038/ismej.2012.46 · 2012 · External reference
Auxotrophic Interactions: A Stabilizing Attribute of Aquatic Microbial Communities?
10.1093/femsec/fiaa115 · 2020 · External reference
Bacterial Amino Acid Auxotrophies Enable Energetically Costlier Proteomes
10.3390/ijms26052285 · 2025 · External reference
Positive Interactions Are Common Among Culturable Bacteria
10.1126/sciadv.abi7159 · 2021 · External reference
Heme Auxotrophy in Abundant Aquatic Microbial Lineages
10.1073/pnas.2102750118 · 2021 · External reference
Metabolic Exchanges Are Ubiquitous in Natural Microbial Communities
10.1038/s41564-023-01511-x · 2023 · External reference
Positive Linkage Between Bacterial Social Traits Reveals That Homogeneous Rather Than Specialised Behavioral Repertoires Prevail in Natural Pseudomonas Communities
10.1093/femsec/fiz185 · 2020 · External reference
Bacterial Siderophores in Community and Host Interactions
10.1038/s41579-019-0284-4 · 2020 · External reference
Interactive Tree of Life (iTOL) v6: Recent Updates to the Phylogenetic Tree Display and Annotation Tool
10.1093/nar/gkae268 · 2024 · External reference
Phyr: An r Package for Phylogenetic Species‐Distribution Modelling in Ecological Communities
10.1111/2041-210x.13471 · 2020 · External reference
RefSeq: Expanding the Prokaryotic Genome Annotation Pipeline Reach With Protein Family Model Curation
10.1093/nar/gkaa1105 · 2021 · External reference
Syntrophic Exchange in Synthetic Microbial Communities
2014 · External reference
The Black Queen Hypothesis: Evolution of Dependencies Through Adaptive Gene Loss
10.1128/mbio.00036-12 · 2012 · External reference
The Sociobiology of Biofilms
10.1111/j.1574-6976.2008.00150.x · 2009 · External reference
Bacterial Unculturability and the Formation of Intercellular Metabolic Networks
10.1016/j.tim.2017.02.015 · 2017 · External reference
Determinants of Synergistic Cell–Cell Interactions in Bacteria
10.1515/hsz-2022-0303 · 2023 · External reference
Metabolic Cross‐Feeding Structures the Assembly of Polysaccharide Degrading Communities
10.1126/sciadv.abk3076 · 2022 · External reference
Reciprocal Fitness Feedbacks Promote the Evolution of Mutualistic Cooperation
10.1016/j.cub.2020.06.100 · 2020 · External reference
10.1128/msystems.00039‐17
10.1128/msystems.00039‐17 · External reference
10.1128/msystems.00291‐20
10.1128/msystems.00291‐20 · External reference
Filling Gaps in Bacterial Amino Acid Biosynthesis Pathways With High‐Throughput Genetics
10.1371/journal.pgen.1007147 · 2018 · External reference
Taxonomic and Environmental Distribution of Bacterial Amino Acid Auxotrophies
10.1038/s41467-023-43435-4 · 2023 · External reference
Metabolite Cross‐Feeding Enhances Virulence in a Model Polymicrobial Infection
10.1371/journal.ppat.1002012 · 2011 · External reference
Fiji: An Open‐Source Platform for Biological‐Image Analysis
10.1038/nmeth.2019 · 2012 · External reference
Synergistic Interactions in the Microbial World
10.1023/a:1020579004534 · 2002 · External reference
Metabolic and Genetic Basis for Auxotrophies in Gram‐Negative Species
10.1073/pnas.1910499117 · 2020 · External reference
Pseudomonas Genomes: Diverse and Adaptable
10.1111/j.1574-6976.2011.00269.x · 2011 · External reference
The Causes of Pseudomonas Diversity
10.1099/00221287-146-10-2345 · 2000 · External reference
Amino Acid Auxotrophies in Human Gut Bacteria Are Linked to Higher Microbiome Diversity and Long‐Term Stability
10.1038/s41396-023-01537-3 · 2023 · External reference
Ocean Plankton. Structure and Function of the Global Ocean Microbiome
10.1126/science.1261359 · 2015 · External reference
The Social Lives of Microbes
10.1146/annurev.ecolsys.38.091206.095740 · 2007 · External reference
Genome Reduction as the Dominant Mode of Evolution
10.1002/bies.201300037 · 2013 · External reference
The Social Network of Microorganisms—How Auxotrophies Shape Complex Communities
10.1038/s41579-018-0004-5 · 2018 · External reference
Gapseq: Informed Prediction of Bacterial Metabolic Pathways and Reconstruction of Accurate Metabolic Models
10.1186/s13059-021-02295-1 · 2021 · External reference