References

Metagenomic Assemblies Tend to Break Around Antibiotic Resistance Genes

10.1186/s12864-024-10876-0 · 2024 · External reference

Anaerobic Digestion of Agricultural Waste for Biogas Production and Sustainable Bioenergy Recovery: A Review

10.1007/s10311-024-01789-1 · 2024 · External reference

Anaerobic Digestates in Agricultural Soils: A Systematic Review of Their Effects on Antibiotic Resistance Genes

10.1016/j.ram.2024.07.005 · 2024 · External reference

Levofloxacin and Rifampin Resistance in Helicobacter pylori Isolates From Central‐Western Colombia: The Role of gyrA Mutations in Fluoroquinolone Resistance

10.3390/antibiotics15050452 · 2026 · External reference

Potential Environmental and Human Health Risks Caused by Antibiotic‐Resistant Bacteria (ARB), Antibiotic Resistance Genes (ARGs) and Emerging Contaminants (ECs) From Municipal Solid Waste (MSW) Landfill

10.3390/antibiotics10040374 · 2021 · External reference

Metaviral SPAdes: Assembly of Viruses From Metagenomic Data

10.1093/bioinformatics/btaa490 · 2020 · External reference

10.1016/j.watres.2025.123371

10.1016/j.watres.2025.123371 · External reference

An Overview of Genes and Mutations Associated With Chlamydiae Species' Resistance to Antibiotics

10.1186/s12941-021-00465-4 · 2021 · External reference

Microbiota Diversity and Gene Expression Dynamics in Human Oral Biofilms

10.1186/1471-2164-15-311 · 2014 · External reference

10.1016/j.drup.2024.101147

10.1016/j.drup.2024.101147 · External reference

High Diversity, Close Genetic Relatedness, and Favorable Living Conditions Benefit Species Co‐Occurrence of Gut Microbiota in Brandt's Vole

10.3389/fmicb.2024.1337402 · 2024 · External reference

Interactions Between Bacterial and Phage Communities in Natural Environments

10.1038/s41579-021-00602-y · 2022 · External reference

Incorporating Phylogenetic Metrics Into Microbial Co‐Occurrence Networks Based on Amplicon Sequences to Discern Community Assembly Processes

10.1111/1755-0998.13079 · 2019 · External reference

QUAST: Quality Assessment Tool for Genome Assemblies

10.1093/bioinformatics/btt086 · 2013 · External reference

Environmental Antimicrobial Resistance: Implications for Food Safety and Public Health

10.3390/antibiotics13111087 · 2024 · External reference

The Impact of Wastewater on Antimicrobial Resistance: A Scoping Review of Transmission Pathways and Contributing Factors

10.3390/antibiotics14020131 · 2025 · External reference

Antibacterial Resistance Worldwide: Causes, Challenges and Responses

10.1038/nm1145 · 2004 · External reference

Manure as a Potential Hotspot for Antibiotic Resistance Dissemination by Horizontal Gene Transfer Events

10.3390/vetsci7030110 · 2020 · External reference

Substrate Complexity Affects the Prevalence and Interconnections of Antibiotic, Metal and Biocide Resistance Genes, Integron‐Integrase Genes, Human Pathogens and Virulence Factors in Anaerobic Digestion

10.1016/j.jhazmat.2022.129441 · 2022 · External reference

Identification of Fic‐1 as an Enzyme That Inhibits Bacterial DNA Replication by AMPylating GyrB, Promoting Filament Formation

2016 · External reference

Metagenome Analysis Using the Kraken Software Suite

10.1038/s41596-022-00738-y · 2022 · External reference

Microbial Anaerobic Digestion: Process Dynamics and Implications From the Renewable Energy, Environmental and Agronomy Perspectives

10.1007/s13762-019-02380-w · 2019 · External reference

Origin of Antibiotics and Antibiotic Resistance, and Their Impacts on Drug Development: A Narrative Review

10.3390/ph16111615 · 2023 · External reference

Status of Pathogens, Antibiotic Resistance Genes and Antibiotic Residues in Wastewater Treatment Systems

10.1007/s11157-017-9438-x · 2017 · External reference

Metagenomics and Other Omics Approaches to Bacterial Communities and Antimicrobial Resistance Assessment in Aquacultures

10.3390/antibiotics10070787 · 2021 · External reference

Phytochemical Profiling, Antioxidant Activity, and Structural Elucidation of Bioactive Compounds From Anaerobically Digested Cow Dung Slurry

10.1007/s44371-025-00262-4 · 2025 · External reference

10.1186/s40816‐021‐00311‐2

10.1186/s40816‐021‐00311‐2 · External reference

Metagenomics as a Transformative Tool for Antibiotic Resistance Surveillance: Highlighting the Impact of Mobile Genetic Elements With a Focus on the Complex Role of Phages

10.3390/antibiotics14030296 · 2025 · External reference

A Novel Therapeutic Concern: Antibiotic Resistance Genes in Common Chronic Diseases

10.3389/fmicb.2022.1037389 · 2022 · External reference

Metabolic Interdependencies in Thermophilic Communities Are Revealed Using Co‐Occurrence and Complementarity Networks

10.1038/s41467-024-52532-x · 2024 · External reference

A Novel Canis lupus familiaris Reference Genome Improves Variant Resolution for Use in Breed‐Specific GWAS

10.26508/lsa.202000902 · 2021 · External reference

10.1186/s12934‐018‐1043‐3

10.1186/s12934‐018‐1043‐3 · External reference

10.1371/journal.pone.0276085

10.1371/journal.pone.0276085 · External reference

Optimizing Sequencing Protocols for Leaderboard Metagenomics by Combining Long and Short Reads

10.1186/s13059-019-1834-9 · 2019 · External reference

A Review on Occurrence and Spread of Antibiotic Resistance in Wastewaters and in Wastewater Treatment Plants: Mechanisms and Perspectives

10.3389/fmicb.2021.717809 · 2021 · External reference

Dissemination of Antimicrobial Resistance in Microbial Ecosystems Through Horizontal Gene Transfer

10.3389/fmicb.2016.00173 · 2016 · External reference

10.1007/978-1-0716-3838-5_18

10.1007/978-1-0716-3838-5_18 · 2024 · External reference

Unicycler: Resolving Bacterial Genome Assemblies From Short and Long Sequencing Reads

10.1371/journal.pcbi.1005595 · 2017 · External reference

Digestate From Agricultural Biogas Plants as a Reservoir of Antimicrobials and Antibiotic Resistance Genes—Implications for the Environment

10.3390/ijerph20032672 · 2023 · External reference

Identification of Stress‐Related Genes by Co‐Expression Network Analysis Based on the Improved Turbot Genome

10.1038/s41597-022-01458-4 · 2022 · External reference