References

Hybridization and speciation

10.1111/j.1420-9101.2012.02599.x · 2013 · External reference

Systematic implications of pollen morphology in subfamilies Lamioideae and Pogostemonoideae (Labiatae)

10.2307/2399915 · 1994 · External reference

Gene tree discord, simplex plots, and statistical tests under the coalescent

10.1093/sysbio/syab008 · 2022 · External reference

Evolution of Asian monsoons and phased uplift of the Himalaya‐Tibetan plateau since Late Miocene times

10.1038/35075035 · 2001 · External reference

Late Miocene–Pliocene Asian monsoon intensification linked to Antarctic ice‐sheet growth

10.1016/j.epsl.2016.03.028 · 2016 · External reference

Chemical composition, biological properties of Anisomeles indica Kuntze essential oil

10.1016/j.indcrop.2015.08.041 · 2015 · External reference

The essential oil of patchouli, Pogostemon cablin: a review

10.1002/ffj.3418 · 2017 · External reference

An updated phylogeny and classification of Lamiaceae subfamily Lamioideae

10.1002/tax.602015 · 2011 · External reference

The sexual status of Colebrookea (Labiatae)

10.7751/telopea19971015 · 1997 · External reference

La microflore Sénonienne du Gabon

1976 · External reference

Pollens et spores Sénoniennes du Gabon

1976 · External reference

Unresolved reference

1897 · External reference

Evidence for a polyphyletic origin of the Labiatae

10.2307/2399774 · 1992 · External reference

Unresolved reference

1992 · External reference

Unresolved reference

2019 · External reference

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

10.1093/oxfordjournals.molbev.a026334 · 2000 · External reference

Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp

10.1002/imt2.107 · 2023 · External reference

Phylogenetic placement of the enigmatic genus Holocheila (Lamiaceae) inferred from plastid DNA sequences

10.12705/632.8 · 2014 · External reference

fastp: an ultra‐fast all‐in‐one FASTQ preprocessor

10.1093/bioinformatics/bty560 · 2018 · External reference

10.2139/ssrn.6792370

10.2139/ssrn.6792370 · External reference

Terrace aware data structure for phylogenomic inference from supermatrices

10.1093/sysbio/syw037 · 2016 · External reference

Gene tree discordance, phylogenetic inference and the multispecies coalescent

10.1016/j.tree.2009.01.009 · 2009 · External reference

Does the Arcto‐Tertiary biogeographic hypothesis explain the disjunct distribution of Northern Hemisphere herbaceous plants? The case of Meehania (Lamiaceae)

10.1371/journal.pone.0117171 · 2015 · External reference

Defining coalescent genes: theory meets practice in organelle phylogenomics

10.1093/sysbio/syab053 · 2022 · External reference

A rapid DNA isolation procedure for small amounts of fresh leaf tissue

1987 · External reference

Phylogenetics, biogeography, and staminal evolution in the tribe Mentheae (Lamiaceae)

10.3732/ajb.1100549 · 2012 · External reference

The South American radiation of Lepechinia (Lamiaceae): phylogenetics, divergence times and evolution of dioecy

10.1111/j.1095-8339.2012.01325.x · 2013 · External reference

Relaxed phylogenetics and dating with confidence

10.1371/journal.pbio.0040088 · 2006 · External reference

Testing for ancient admixture between closely related populations

10.1093/molbev/msr048 · 2011 · External reference

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

10.1186/s13059-015-0721-2 · 2015 · External reference

OrthoFinder: phylogenetic orthology inference for comparative genomics

10.1186/s13059-019-1832-y · 2019 · External reference

Full‐length transcriptome assembly from RNA‐Seq data without a reference genome

10.1038/nbt.1883 · 2011 · External reference

Relict species: a relict concept?

10.1016/j.tree.2014.10.002 · 2014 · External reference

De novo transcript sequence reconstruction from RNA‐Seq using the Trinity platform for reference generation and analysis

10.1038/nprot.2013.084 · 2013 · External reference

The genetic legacy of the Quaternary ice ages

10.1038/35016000 · 2000 · External reference

UFBoot2: improving the ultrafast bootstrap approximation

10.1093/molbev/msx281 · 2018 · External reference

Late Miocene climate cooling and intensification of southeast Asian winter monsoon

10.1038/s41467-018-03950-1 · 2018 · External reference

Application of phylogenetic networks in evolutionary studies

10.1093/molbev/msj030 · 2006 · External reference

Dendroscope: an interactive viewer for large phylogenetic trees

10.1186/1471-2105-8-460 · 2007 · External reference

hybpiper‐nf and paragone‐nf: containerization and additional options for target capture assembly and paralog resolution

10.1002/aps3.11532 · 2023 · External reference

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

10.1186/s13059-020-02154-5 · 2020 · External reference

HybPiper: extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment

10.3732/apps.1600016 · 2016 · External reference

ModelFinder: fast model selection for accurate phylogenetic estimates

10.1038/nmeth.4285 · 2017 · External reference

Rampant nuclear‐mitochondrial‐plastid phylogenomic discordance in globally distributed calcifying microalgae

10.1111/nph.18219 · 2022 · External reference

MAFFT multiple sequence alignment software version 7: improvements in performance and usability

10.1093/molbev/mst010 · 2013 · External reference

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

10.1093/bioinformatics/bts199 · 2012 · External reference

Labiatarum sino‐japonicarum prodromus

1929 · External reference

AliView: a fast and lightweight alignment viewer and editor for large datasets

10.1093/bioinformatics/btu531 · 2014 · External reference

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus)

10.1111/nph.15386 · 2019 · External reference

Cd‐hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

10.1093/bioinformatics/btl158 · 2006 · External reference

A large‐scale chloroplast phylogeny of the Lamiaceae sheds new light on its subfamilial classification

10.1038/srep34343 · 2016 · External reference

Extant timetrees are consistent with a myriad of diversification histories

10.1038/s41586-020-2176-1 · 2020 · External reference

Gene trees in species trees

10.1093/sysbio/46.3.523 · 1997 · External reference

Inferring phylogeny despite incomplete lineage sorting

10.1080/10635150500354928 · 2006 · External reference

The middle and upper Miocene floras of the Meuro and Rauno sequences in the Lusatica region. Part II: Dicotyledones

10.1127/palb/257/2001/35 · 2001 · External reference

Dsuite – Fast D‐statistics and related admixture evidence from VCF files

10.1111/1755-0998.13265 · 2021 · External reference

Assessing the fossil record of asterids in the context of our current phylogenetic framework

10.3417/2014033 · 2015 · External reference

ASTRAL: genome‐scale coalescent‐based species tree estimation

10.1093/bioinformatics/btu462 · 2014 · External reference

Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures

10.1073/pnas.1518659113 · 2016 · External reference

Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae s.l

10.1093/sysbio/syaa066 · 2021 · External reference

Phylogenetic approaches for studying diversification

10.1111/ele.12251 · 2014 · External reference

Fossil pollen records of extant angiosperms

10.1007/bf02860537 · 1981 · External reference

Evolutionary relationships and range evolution of greenhood orchids (subtribe Pterostylidinae): insights from plastid phylogenomics

10.3389/fpls.2022.912089 · 2022 · External reference

IQ‐TREE: a fast and effective stochastic algorithm for estimating maximum‐likelihood phylogenies

10.1093/molbev/msu300 · 2015 · External reference

Best practices for justifying fossil calibrations

10.1093/sysbio/syr107 · 2012 · External reference

A genomic perspective on hybridization and speciation

10.1111/mec.13557 · 2016 · External reference

Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life

10.1002/ajb2.1016 · 2018 · External reference

CODA: convergence diagnosis and output analysis for MCMC

2006 · External reference

Unresolved reference

External reference

Taxonomic studies in the Labiatae tribe Pogostemoneae

1982 · External reference

Phylogenomics of the tribe Leonureae reveals a new genus: Paraleonurus (Lamiaceae, Lamioideae)

10.55730/1300-008x.2825 · 2024 · External reference

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

10.1186/s13007-019-0435-7 · 2019 · External reference

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

10.1111/2041-210x.12199 · 2014 · External reference

Is BAMM flawed? Theoretical and practical concerns in the analysis of multi‐rate diversification models

10.1093/sysbio/syx037 · 2017 · External reference

Posterior summarization in Bayesian phylogenetics using Tracer 1.7

10.1093/sysbio/syy032 · 2018 · External reference

Inferring speciation times under an episodic molecular clock

10.1080/10635150701420643 · 2007 · External reference

Unresolved reference

2020 · External reference

phytools: an R package for phylogenetic comparative biology (and other things)

10.1111/j.2041-210x.2011.00169.x · 2011 · External reference

phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)

10.7717/peerj.16505 · 2024 · External reference

MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R

10.1093/bioinformatics/btaa868 · 2021 · External reference

MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space

10.1093/sysbio/sys029 · 2012 · External reference

A timeframe for mint evolution: towards a better understanding of trait evolution and historical biogeography in Lamiaceae

10.1093/botlinnean/boab104 · 2022 · External reference

New insights into evolutionary relationships within the subfamily Lamioideae (Lamiaceae) based on pentatricopeptide repeat (PPR) nuclear DNA sequences

10.3732/ajb.1500233 · 2015 · External reference

Phylogeny and biogeography of New World Stachydeae (Lamiaceae) with emphasis on the origin and diversification of Hawaiian and South American taxa

10.1016/j.ympev.2013.05.023 · 2013 · External reference

Pericarp structure and phylogeny of Lamiaceae subfamily Pogostemonoideae

10.1111/j.1756-1051.1994.tb00572.x · 1994 · External reference

Molecular phylogenetics, character evolution, and suprageneric classification of Lamioideae (Lamiaceae)

10.3417/2007174 · 2010 · External reference

Chemical composition of the essential oil of Microtoena patchoulii

10.1080/10412905.2007.9699297 · 2007 · External reference

Phytop: a tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL

10.1093/hr/uhae330 · 2025 · External reference

Untangling the generic boundaries in tribe Marrubieae (Lamiaceae: Lamioideae) using nuclear and plastid DNA sequences

10.12705/674.6 · 2018 · External reference

Dating the time of origin of major clades: molecular clocks and the fossil record

10.1146/annurev.earth.30.091201.140057 · 2002 · External reference

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

10.1186/s12862-015-0423-0 · 2015 · External reference

Inferring phylogenetic networks with maximum pseudolikelihood under incomplete lineage sorting

10.1371/journal.pgen.1005896 · 2016 · External reference

RAxML version 8: a tool for phylogenetic analysis and post‐analysis of large phylogenies

10.1093/bioinformatics/btu033 · 2014 · External reference

Morphology and molecules revealed a remarkable new genus of Lamiaceae, a surprising discovery in south‐eastern Europe

10.1002/tax.13313 · 2025 · External reference

A comprehensive review on the phytochemical constituents and pharmacological activities of Pogostemon cablin Benth.: an aromatic medicinal plant of industrial importance

10.3390/molecules20058521 · 2015 · External reference

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

10.1186/1471-2105-9-322 · 2008 · External reference

Essential oil composition and biological activities of Microtoena insuavis from Vietnam

10.1007/s10600-024-04377-5 · 2024 · External reference

Unresolved reference

2018 · External reference

Comprehensive study of volatile compounds of rare Leucosceptrum canum Smith honey: Aroma profiling and characteristic compound screening via GC‐MS and GC‐MS/MS

10.1016/j.foodres.2023.112799 · 2023 · External reference

Phylogenomic analyses revealed widely occurring hybridization events across Elsholtzieae (Lamiaceae)

10.1016/j.ympev.2024.108112 · 2024 · External reference

Phylotranscriptomic and ecological analyses reveal the evolution and morphological adaptation of Abies

10.1111/jipb.13760 · 2024 · External reference

An astronomically dated record of Earth's climate and its predictability over the last 66 million years

10.1126/science.aba6853 · 2020 · External reference

Surprisingly modern latest Cretaceous–earliest Paleocene woods of India

10.1163/22941932-20170174 · 2017 · External reference

Bandage: interactive visualization of de novo genome assemblies

10.1093/bioinformatics/btv383 · 2015 · External reference

Microtoena wawushanensis (Lamiaceae, Lamioideae): A new species from Sichuan, China

10.3897/phytokeys.250.139362 · 2024 · External reference

Integrated morphological and phylogenomic analyses revealed a novel genus Paramicrotoena (Lamiaceae ‐ Pogostemoneae) discovered in the Pan‐Himalaya

10.1016/j.ympev.2025.108421 · 2025 · External reference

Molecular phylogenetics of Chelonopsis (Lamiaceae: Gomphostemmateae) as inferred from nuclear and plastid DNA and morphology

10.12705/622.11 · 2013 · External reference

PAML 4: phylogenetic analysis by maximum likelihood

10.1093/molbev/msm088 · 2007 · External reference

Orthology inference in nonmodel organisms using transcriptomes and low‐coverage genomes: improving accuracy and matrix occupancy for phylogenomics

10.1093/molbev/msu245 · 2014 · External reference

A taxonomic revision of Pogostemon (Lamiaceae) from China

2015 · External reference

Phylogenetic relationships, character evolution and biogeographic diversification of Pogostemon s.l. (Lamiaceae)

10.1016/j.ympev.2016.01.020 · 2016 · External reference

Phylogeny and historical biogeography of Isodon (Lamiaceae): rapid radiation in south‐west China and Miocene overland dispersal into Africa

10.1016/j.ympev.2014.04.017 · 2014 · External reference

Maximum likelihood inference of reticulate evolutionary histories

10.1073/pnas.1407950111 · 2014 · External reference

Plastid phylogenomics with broad taxon sampling provides insights into the generic delimitation of Paraphlomideae (Lamiaceae)

10.1002/tax.13222 · 2024 · External reference

Trends, rhythms, and aberrations in global climate 65 Ma to present

10.1126/science.1059412 · 2001 · External reference

An early Cenozoic perspective on greenhouse warming and carbon‐cycle dynamics

10.1038/nature06588 · 2008 · External reference

Nuclear phylogenomics of angiosperms and insights into their relationships and evolution

10.1111/jipb.13609 · 2024 · External reference

Insight into Central Asian flora from the Cenozoic Tianshan montane origin and radiation of Lagochilus (Lamiaceae)

10.1371/journal.pone.0178389 · 2017 · External reference

ASTRAL‐III: polynomial time species tree reconstruction from partially resolved gene trees

10.1186/s12859-018-2129-y · 2018 · External reference

PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

10.1111/1755-0998.13096 · 2020 · External reference

Rampant hybridization underlies cytonuclear discordance and shallow plastid divergence in Juniperus (Cupressaceae)

2026 · External reference

An updated tribal classification of Lamiaceae based on plastome phylogenomics

10.1186/s12915-020-00931-z · 2021 · External reference

Systematic placement of the enigmatic Southeast Asian genus Paralamium and an updated phylogeny of tribe Pogostemoneae (Lamiaceae subfamily Lamioideae)

10.3389/fpls.2021.646133 · 2021 · External reference

Home at last: Molecular phylogenetic analyses support subsuming Metastachydium within Phlomoides (Lamiaceae)

10.1002/tax.12935 · 2023 · External reference