Research graph
References from Discovery of Post‐Translationally Modified Epitopes in Autoimmunity: Someone Has to Fish so Everyone Can Eat. Local targets link to admitted publications; unresolved targets remain external evidence.
T‐Cell Antigen Receptor Genes and T‐Cell Recognition
10.1038/334395a0 · 1988 · External reference
Understanding the Drivers of MHC Restriction of T Cell Receptors
10.1038/s41577-018-0007-5 · 2018 · External reference
Present Yourself! By MHC Class I and MHC Class II Molecules
10.1016/j.it.2016.08.010 · 2016 · External reference
‘Shared‐Hook’ and ‘Changed‐Hook’ Binding Activities of Herpesviral Core Nuclear Egress Complexes Identified by Random Mutagenesis
10.3390/cells11244030 · 2022 · External reference
1,2,3, MHC: A Review of Mass‐Spectrometry‐Based Immunopeptidomics Methods for Relative and Absolute Quantification of pMHCs
10.1016/j.iotech.2021.100042 · 2021 · External reference
Comprehensive Assessment of T‐Cell Receptor Beta‐Chain Diversity in Alphabeta T Cells
10.1182/blood-2009-04-217604 · 2009 · External reference
The Naive T‐Cell Receptor Repertoire Has an Extremely Broad Distribution of Clone Sizes
10.7554/elife.49900 · 2020 · External reference
Diversity and Clonal Selection in the Human T‐Cell Repertoire
10.1073/pnas.1409155111 · 2014 · External reference
Glycosylation in Cellular Mechanisms of Health and Disease
10.1016/j.cell.2006.08.019 · 2006 · External reference
Protein Phosphorylation in Signaling–50 Years and Counting
10.1016/j.tibs.2005.04.013 · 2005 · External reference
Acetylation and Methylation of Histones and Their Possible Role in the Regulation of RNA Synthesis
10.1073/pnas.51.5.786 · 1964 · External reference
Effect of Posttranslational Modifications on Enzyme Function and Assembly
10.1016/j.jprot.2013.03.025 · 2013 · External reference
Protein Posttranslational Modifications in Health and Diseases: Functions, Regulatory Mechanisms, and Therapeutic Implications
10.1002/mco2.261 · 2023 · External reference
Oxidative Post‐Translational Modifications and Their Involvement in the Pathogenesis of Autoimmune Diseases
10.1016/j.redox.2014.05.004 · 2014 · External reference
Pathological Impact of Redox Post‐Translational Modifications
10.1089/ars.2023.0252 · 2024 · External reference
Protein Carbamylation Is a Hallmark of Aging
10.1073/pnas.1517096113 · 2016 · External reference
Mechanisms and Consequences of Carbamoylation
10.1038/nrneph.2017.103 · 2017 · External reference
The Functional Diversity of Protein Lysine Methylation
10.1002/msb.134974 · 2014 · External reference
Decoding the Protein Methylome: Identification, Validation, and Functional Insights
10.1016/j.bmc.2024.118056 · 2025 · External reference
Beyond Histones–The Expanding Roles of Protein Lysine Methylation
10.1111/febs.14056 · 2017 · External reference
The World of Protein Acetylation
10.1016/j.bbapap.2016.06.007 · 2016 · External reference
Functions and Mechanisms of Non‐Histone Protein Acetylation
10.1038/s41580-018-0081-3 · 2019 · External reference
Protein Acetylation and Deacetylation: An Important Regulatory Modification in Gene Transcription (Review)
2020 · External reference
Citrullination: A Posttranslational Modification in Health and Disease
10.1016/j.biocel.2006.03.008 · 2006 · External reference
Citrullination in Health and Disease: From Physiological Function to Gene Regulation
10.1016/j.gendis.2024.101355 · 2025 · External reference
Citrullination in the Pathology of Inflammatory and Autoimmune Disorders: Recent Advances and Future Perspectives
10.1007/s00018-022-04126-3 · 2022 · External reference
Citrullination Is an Inflammation‐Dependent Process
10.1136/ard.2005.049403 · 2006 · External reference
Joint Inflammation Related Citrullination of Functional Arginines in Extracellular Proteins
10.1038/s41598-017-08597-4 · 2017 · External reference
Biological Relevance of Citrullinations: Diagnostic, Prognostic and Therapeutic Options
10.3109/08916934.2014.962024 · 2015 · External reference
Implications of Post‐Translational Modifications in Autoimmunity With Emphasis on Citrullination, Homocitrullination and Acetylation for the Pathogenesis, Diagnosis and Prognosis of Rheumatoid Arthritis
10.3390/ijms232415803 · 2022 · External reference
Beyond Citrullination: Other Post‐Translational Protein Modifications in Rheumatoid Arthritis
10.1038/nrrheum.2017.15 · 2017 · External reference
Posttranslational Modifications of Self‐Antigens
10.1196/annals.1313.001 · 2005 · External reference
Post‐Translational Modifications of Self Antigens: Implications for Autoimmunity
10.1016/j.coi.2004.09.001 · 2004 · External reference
The Clinical Significance of Posttranslational Modification of Autoantigens
10.1007/s12016-014-8424-0 · 2014 · External reference
Citrullinated Glucose‐Regulated Protein 78 Is an Autoantigen in Type 1 Diabetes
10.2337/db14-0621 · 2015 · External reference
Myelin Localization of Peptidylarginine Deiminases 2 and 4: Comparison of PAD2 and PAD4 Activities
10.1038/labinvest.3700748 · 2008 · External reference
Citrullination and PAD Enzyme Biology in Type 1 Diabetes ‐ Regulators of Inflammation, Autoimmunity, and Pathology
10.3389/fimmu.2021.678953 · 2021 · External reference
Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid‐Derived CD4(+) T Cells in Multiple Sclerosis
10.3389/fimmu.2019.00540 · 2019 · External reference
Autoimmunity in Rheumatoid Arthritis: Different Antigens–Common Principles
10.1136/annrheumdis-2012-202349 · 2013 · External reference
Citrulline Is an Essential Constituent of Antigenic Determinants Recognized by Rheumatoid Arthritis‐Specific Autoantibodies
10.1172/jci1316 · 1998 · External reference
Inflammation‐Induced Citrullinated Glucose‐Regulated Protein 78 Elicits Immune Responses in Human Type 1 Diabetes
10.2337/db18-0295 · 2018 · External reference
The Role of Citrullinated Proteins Suggests a Novel Mechanism in the Pathogenesis of Multiple Sclerosis
10.1007/s11064-006-9144-5 · 2007 · External reference
Autoantibodies to Posttranslational Modifications in Rheumatoid Arthritis
10.1155/2014/492873 · 2014 · External reference
T‐Cell Autoreactivity to Citrullinated Autoantigenic Peptides in Rheumatoid Arthritis Patients Carrying HLA‐DRB1 Shared Epitope Alleles
10.1186/ar3848 · 2012 · External reference
Autoantibodies Recognizing Carbamylated Proteins Are Present in Sera of Patients With Rheumatoid Arthritis and Predict Joint Damage
10.1073/pnas.1114465108 · 2011 · External reference
Carbamylation‐Dependent Activation of T Cells: A Novel Mechanism in the Pathogenesis of Autoimmune Arthritis
10.4049/jimmunol.1000075 · 2010 · External reference
Rheumatoid Arthritis Antigens Homocitrulline and Citrulline Are Generated by Local Myeloperoxidase and Peptidyl Arginine Deiminases 2, 3 and 4 in Rheumatoid Nodule and Synovial Tissue
10.1186/s13075-016-1140-9 · 2016 · External reference
Apoptosis‐Induced Acetylation of Histones Is Pathogenic in Systemic Lupus Erythematosus
10.1002/art.22646 · 2007 · External reference
Apoptosis‐Associated Acetylation on Histone H2B Is an Epitope for Lupus Autoantibodies
10.1016/j.molimm.2009.08.009 · 2009 · External reference
Presence of Anti‐Acetylated Peptide Antibodies (AAPA) in Inflammatory Arthritis and Other Rheumatic Diseases Suggests Discriminative Diagnostic Capacity Towards Early Rheumatoid Arthritis
10.1177/1759720x211022533 · 2021 · External reference
Generation of Neoantigenic Epitopes After Posttranslational Modification of Type II Collagen by Factors Present Within the Inflamed Joint
10.1002/art.21479 · 2005 · External reference
Autoantibodies to Posttranslationally Modified Type II Collagen as Potential Biomarkers for Rheumatoid Arthritis
10.1002/art.37964 · 2013 · External reference
Islet Glutamic Acid Decarboxylase Modified by Reactive Oxygen Species Is Recognized by Antibodies From Patients With Type 1 Diabetes Mellitus
10.1046/j.1365-2249.2001.01653.x · 2001 · External reference
Acetylated Histones Contribute to the Immunostimulatory Potential of Neutrophil Extracellular Traps in Systemic Lupus Erythematosus
10.1111/cei.12359 · 2015 · External reference
T Cell Recognition and Therapeutic Effect of a Phosphorylated Synthetic Peptide of the 70K snRNP Protein Administered in MR/Lpr Mice
10.1002/immu.200310002 · 2003 · External reference
Spliceosomal Peptide P140 for Immunotherapy of Systemic Lupus Erythematosus: Results of an Early Phase II Clinical Trial
10.1002/art.24027 · 2008 · External reference
Autoantibody Against N(Epsilon)‐(Carboxymethyl)lysine: An Advanced Glycation End Product of the Maillard Reaction
10.2337/diabetes.48.9.1842 · 1999 · External reference
Detection of Autoantibodies Against Advanced Glycation Endproducts and AGE‐Immune Complexes in Serum of Patients With Diabetes Mellitus
10.1016/s0009-8981(00)00389-2 · 2001 · External reference
Glycation End‐Products Specific Auto‐Antibodies in Systemic Lupus Erythematosus
10.6026/97320630018127 · 2022 · External reference
Gliadin‐Specific, HLA‐DQ(Alpha 1*0501, Beta 1*0201) Restricted T Cells Isolated From the Small Intestinal Mucosa of Celiac Disease Patients
10.1084/jem.178.1.187 · 1993 · External reference
The Intestinal T Cell Response to Alpha‐Gliadin in Adult Celiac Disease Is Focused on a Single Deamidated Glutamine Targeted by Tissue Transglutaminase
10.1084/jem.191.4.603 · 2000 · External reference
Posttranslational Modification of HLA‐DQ Binding Islet Autoantigens in Type 1 Diabetes
10.2337/db12-1214 · 2014 · External reference
Recognition of Posttranslationally Modified GAD65 Epitopes in Subjects With Type 1 Diabetes
10.2337/db13-1952 · 2014 · External reference
Human Islets and Dendritic Cells Generate Post‐Translationally Modified Islet Autoantigens
10.1111/cei.12775 · 2016 · External reference
T‐Cell Epitopes and Neo‐Epitopes in Type 1 Diabetes: A Comprehensive Update and Reappraisal
10.2337/dbi19-0022 · 2020 · External reference
Apoptosis‐Induced Histone H3 Methylation Is Targeted by Autoantibodies in Systemic Lupus Erythematosus
10.1136/ard.2010.129320 · 2011 · External reference
Hybrid Insulin Peptides Are Autoantigens in Type 1 Diabetes
10.2337/db19-0128 · 2019 · External reference
A Chemical Approach to Assess the Impact of Post‐Translational Modification on MHC Peptide Binding and Effector Cell Engagement
10.1021/acschembio.4c00312 · 2024 · External reference
The Shared Susceptibility Epitope of HLA‐DR4 Binds Citrullinated Self‐Antigens and the TCR
10.1126/sciimmunol.abe0896 · 2021 · External reference
The Interplay Between Citrullination and HLA‐DRB1 Polymorphism in Shaping Peptide Binding Hierarchies in Rheumatoid Arthritis
10.1074/jbc.ra117.001013 · 2018 · External reference
The Molecular Basis of T Cell Receptor Recognition of Citrullinated Tenascin‐C Presented by HLA‐DR4
10.1016/j.jbc.2025.110326 · 2025 · External reference
The Molecular Basis Underlying T Cell Specificity Towards Citrullinated Epitopes Presented by HLA‐DR4
10.1038/s41467-024-50511-w · 2024 · External reference
T Cells Specific for Post‐Translational Modifications Escape Intrathymic Tolerance Induction
10.1038/s41467-017-02763-y · 2018 · External reference
Non‐Genetically Encoded Epitopes Are Relevant Targets in Autoimmune Diabetes
2021 · External reference
Aberrant Expression of Transglutaminase 2 in Pancreas and Thymus of NOD Mice Underscores the Importance of Deamidation in Neoantigen Generation
10.3389/fendo.2022.908248 · 2022 · External reference
The Beta Cell‐Immune Cell Interface in Type 1 Diabetes (T1D)
10.1016/j.molmet.2023.101809 · 2023 · External reference
Islet Autoimmunity in Human Type 1 Diabetes: Initiation and Progression From the Perspective of the Beta Cell
10.1007/s00125-023-05970-z · 2023 · External reference
IRE1α Implications in Endoplasmic Reticulum Stress‐Mediated Development and Pathogenesis of Autoimmune Diseases
10.3389/fimmu.2018.01289 · 2018 · External reference
Antigen Presentation by MHC Class I and Its Regulation by Interferon Gamma
10.1016/s0952-7915(99)80014-4 · 1999 · External reference
Interferon‐Gamma, the Functional Plasticity of the Ubiquitin‐Proteasome System, and MHC Class I Antigen Processing
10.1111/j.0105-2896.2005.00308.x · 2005 · External reference
Projection of an Immunological Self Shadow Within the Thymus by the Aire Protein
10.1126/science.1075958 · 2002 · External reference
Anti‐Citrullinated Peptide Antibody Assays and Their Role in the Diagnosis of Rheumatoid Arthritis
10.1002/art.24827 · 2009 · External reference
Peptidylarginine Deiminases in Citrullination, Gene Regulation, Health and Pathogenesis
10.1016/j.bbagrm.2013.07.003 · 2013 · External reference
NLRP3 Inflammasome Promotes PAD2/PAD4 Release and Protein Citrullination in Rheumatoid Arthritis
10.1038/s42003-026-10277-x · 2026 · External reference
PADI2 Is Significantly Associated With Rheumatoid Arthritis
10.1371/journal.pone.0081259 · 2013 · External reference
Peptidyl Arginine Deiminase Type 2 (PAD‐2) and PAD‐4 but Not PAD‐1, PAD‐3, and PAD‐6 Are Expressed in Rheumatoid Arthritis Synovium in Close Association With Tissue Inflammation
10.1002/art.22983 · 2007 · External reference
PADI4 Polymorphisms Confer Risk of Anti‐CCP‐Positive Rheumatoid Arthritis in Synergy With HLA‐DRB1*04 and Smoking
10.3389/fimmu.2021.707690 · 2021 · External reference
Expression of Peptidylarginine Deiminase Type 4 (PAD4) in Various Tumors
10.1002/mc.20169 · 2006 · External reference
Localization of Peptidylarginine Deiminase 4 (PADI4) and Citrullinated Protein in Synovial Tissue of Rheumatoid Arthritis
10.1093/rheumatology/keh414 · 2005 · External reference
Increased Levels of Peptidylarginine Deiminase 2 in Synovial Fluid From Anti‐CCP‐Positive Rheumatoid Arthritis Patients: Association With Disease Activity and Inflammatory Markers
10.1093/rheumatology/kev440 · 2016 · External reference
The Shared Epitope Hypothesis. An Approach to Understanding the Molecular Genetics of Susceptibility to Rheumatoid Arthritis
10.1002/art.1780301102 · 1987 · External reference
Association Between HLA Class II Genes and Autoantibodies to Cyclic Citrullinated Peptides (CCPs) Influences the Severity of Rheumatoid Arthritis
10.1002/art.20316 · 2004 · External reference
Human Leukocyte Antigen‐Disease Associations in Rheumatoid Arthritis
10.1016/j.rdc.2017.04.003 · 2017 · External reference
Myelin Basic Protein Citrullination in Multiple Sclerosis: A Potential Therapeutic Target for the Pathology
10.1007/s11064-016-1920-2 · 2016 · External reference
NETs Are a Source of Citrullinated Autoantigens and Stimulate Inflammatory Responses in Rheumatoid Arthritis
10.1126/scitranslmed.3005580 · 2013 · External reference
Citrullination of Autoantigens Implicates NETosis in the Induction of Autoimmunity
10.1136/annrheumdis-2013-203844 · 2014 · External reference
Spontaneous Secretion of the Citrullination Enzyme PAD2 and Cell Surface Exposure of PAD4 by Neutrophils
10.3389/fimmu.2017.01200 · 2017 · External reference
Characterization of Circulating Extracellular Traps and Immune Responses to Citrullinated LL37 in Psoriasis
10.3389/fimmu.2023.1247592 · 2023 · External reference
The Antimicrobial Peptide LL37 Is a T‐Cell Autoantigen in Psoriasis
10.1038/ncomms6621 · 2014 · External reference
T Cell Epitopes and Post‐Translationally Modified Epitopes in Type 1 Diabetes
10.1007/s11892-015-0657-7 · 2015 · External reference
Biomarkers of Autoimmunity and Beta Cell Metabolism in Type 1 Diabetes
10.3389/fimmu.2022.1028130 · 2022 · External reference
Pathogenic CD4 T Cells in Type 1 Diabetes Recognize Epitopes Formed by Peptide Fusion
10.1126/science.aad2791 · 2016 · External reference
Lysosomal Cathepsin Creates Chimeric Epitopes for Diabetogenic CD4 T Cells via Transpeptidation
10.1084/jem.20192135 · 2021 · External reference
Cathepsin D Drives the Formation of Hybrid Insulin Peptides Relevant to the Pathogenesis of Type 1 Diabetes
10.2337/db22-0303 · 2022 · External reference
Hybrid Insulin Peptides Are Neo‐Epitopes for CD4 T Cells in Autoimmune Diabetes
10.1097/med.0000000000000490 · 2019 · External reference
Acceleration of Diabetes in Young NOD Mice With a CD4+ Islet‐Specific T Cell Clone
10.1126/science.2205920 · 1990 · External reference
An Insulin‐IAPP Hybrid Peptide Is an Endogenous Antigen for CD4 T Cells in the Non‐Obese Diabetic Mouse
10.1016/j.jaut.2016.10.007 · 2017 · External reference
Expanding the Case for Hybrid Insulin Peptides in Type 1 Diabetes
10.2337/dbi25-0008 · 2025 · External reference
HLA‐DQ2 and ‐DQ8 Signatures of Gluten T Cell Epitopes in Celiac Disease
10.1172/jci27620 · 2006 · External reference
Coeliac Disease: Dissecting a Complex Inflammatory Disorder
10.1038/nri885 · 2002 · External reference
IL‐15, Gluten and HLA‐DQ8 Drive Tissue Destruction in Coeliac Disease
10.1038/s41586-020-2003-8 · 2020 · External reference
T Cell Antigen Discovery
10.1038/s41592-020-0867-z · 2021 · External reference
Personalized T Cell‐Mediated Cancer Immunotherapy: Progress and Challenges
10.1016/j.copbio.2017.03.024 · 2017 · External reference
Identification of Hybrid Insulin Peptides (HIPs) in Mouse and Human Islets by Mass Spectrometry
10.1021/acs.jproteome.8b00875 · 2019 · External reference
Hybrid Insulin Peptide Isomers Spontaneously Form in Pancreatic Beta‐Cells From an Aspartic Anhydride Intermediate
10.1016/j.jbc.2023.105264 · 2023 · External reference
The Rheumatoid Arthritis‐Associated Citrullinome
10.1016/j.chembiol.2018.03.002 · 2018 · External reference
Assessing the Citrullinome in Rheumatoid Arthritis Synovial Fluid With and Without Enrichment of Citrullinated Peptides
10.1021/pr500030x · 2014 · External reference
Lysine Acetylation Targets Protein Complexes and Co‐Regulates Major Cellular Functions
10.1126/science.1175371 · 2009 · External reference
System‐Wide Analysis of Protein Acetylation and Ubiquitination Reveals a Diversified Regulation in Human Cancer Cells
10.3390/biom10030411 · 2020 · External reference
Global, In Vivo, and Site‐Specific Phosphorylation Dynamics in Signaling Networks
10.1016/j.cell.2006.09.026 · 2006 · External reference
Accurate Identification of Deamidation and Citrullination From Global Shotgun Proteomics Data Using a Dual‐Search Delta Score Strategy
10.1021/acs.jproteome.9b00766 · 2020 · External reference
Unambiguous Determination of Isobaric Histone Modifications by Reversed‐Phase Retention Time and High‐Mass Accuracy
10.1016/j.ab.2009.08.027 · 2010 · External reference
Mass Spectrometry for Lysine Methylation: Principles, Progress, and Prospects
2025 · External reference
Quantitation of the Immunodominant 33‐Mer Peptide From α‐Gliadin in Wheat Flours by Liquid Chromatography Tandem Mass Spectrometry
10.1038/srep45092 · 2017 · External reference
Immunopeptidomics for Autoimmunity: Unlocking the Chamber of Immune Secrets
10.1038/s41540-024-00482-x · 2025 · External reference
The MHC‐II Peptidome of Pancreatic Islets Identifies Key Features of Autoimmune Peptides
10.1038/s41590-020-0623-7 · 2020 · External reference
Sliding Window Interaction Grammar (SWING): A Generalized Interaction Language Model for Peptide and Protein Interactions
10.1038/s41592-025-02723-1 · 2025 · External reference
The Immunoreactive Platform of the Pancreatic Islets Influences the Development of Autoreactivity
10.2337/dbi18-0048 · 2019 · External reference
The Antigen Presentation Landscape of Cytokine‐Stressed Human Pancreatic Islets
10.1016/j.celrep.2025.115927 · 2025 · External reference
Deciphering the MHC Immunopeptidome of Human Cancers With Ligand.MHC Atlas
10.1093/bib/bbaf314 · 2025 · External reference
Using Mass Spectrometry to Identify Neoantigens in Autoimmune Diseases: The Type 1 Diabetes Example
10.1016/j.smim.2023.101730 · 2023 · External reference
Data‐Independent Immunopeptidomics Discovery of Low‐Abundant Bacterial Epitopes
10.1021/acs.jproteome.5c00449 · 2025 · External reference
Benchmarking Bioinformatics Pipelines in Data‐Independent Acquisition Mass Spectrometry for Immunopeptidomics
10.1016/j.mcpro.2023.100515 · 2023 · External reference
Skyline: An Open Source Document Editor for Creating and Analyzing Targeted Proteomics Experiments
10.1093/bioinformatics/btq054 · 2010 · External reference
Extending the Limits of Quantitative Proteome Profiling With Data‐Independent Acquisition and Application to Acetaminophen‐Treated Three‐Dimensional Liver Microtissues
10.1074/mcp.m114.044305 · 2015 · External reference
DIA‐NN: Neural Networks and Interference Correction Enable Deep Proteome Coverage in High Throughput
10.1038/s41592-019-0638-x · 2020 · External reference
Deep Learning Enables De Novo Peptide Sequencing From Data‐Independent‐Acquisition Mass Spectrometry
10.1038/s41592-018-0260-3 · 2019 · External reference
Exploring the Dynamic Landscape of Immunopeptidomics: Unravelling Posttranslational Modifications and Navigating Bioinformatics Terrain
10.1002/mas.21905 · 2025 · External reference
A Mass‐Tolerant Database Search Identifies a Large Proportion of Unassigned Spectra in Shotgun Proteomics as Modified Peptides
10.1038/nbt.3267 · 2015 · External reference
Digging Deeper Into the Immunopeptidome: Characterization of Post‐Translationally Modified Peptides Presented by MHC I
10.1007/s42485-021-00066-x · 2021 · External reference
Unraveling the Glycosylated Immunopeptidome With HLA‐Glyco
10.1038/s41467-023-39270-2 · 2023 · External reference
Immunopeptidomic Analysis Reveals That Deamidated HLA‐Bound Peptides Arise Predominantly From Deglycosylated Precursors
10.1074/mcp.ra119.001846 · 2020 · External reference
Identification of Modified Peptides Using Localization‐Aware Open Search
10.1038/s41467-020-17921-y · 2020 · External reference
PTM‐Shepherd: Analysis and Summarization of Post‐Translational and Chemical Modifications From Open Search Results
10.1074/mcp.tir120.002216 · 2021 · External reference
The Importance of Being Presented: Target Validation by Immunopeptidomics for Epitope‐Specific Immunotherapies
10.3389/fimmu.2022.883989 · 2022 · External reference
High‐Throughput, Targeted MHC Class I Immunopeptidomics Using a Functional Genetics Screening Platform
10.1038/s41587-022-01566-x · 2023 · External reference
The Immune Epitope Database (IEDB): 2018 Update
10.1093/nar/gky1006 · 2019 · External reference
NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA‐A and ‐B Locus Protein of Known Sequence
10.1371/journal.pone.0000796 · 2007 · External reference
MHCflurry 2.0: Improved Pan‐Allele Prediction of MHC Class I‐Presented Peptides by Incorporating Antigen Processing
10.1016/j.cels.2020.06.010 · 2020 · External reference
NetMHCpan‐4.1 and NetMHCIIpan‐4.0: Improved Predictions of MHC Antigen Presentation by Concurrent Motif Deconvolution and Integration of MS MHC Eluted Ligand Data
10.1093/nar/gkaa379 · 2020 · External reference
Robust Prediction of HLA Class II Epitopes by Deep Motif Deconvolution of Immunopeptidomes
10.1038/s41587-019-0289-6 · 2019 · External reference
MHCSeqNet2‐Improved Peptide‐Class I MHC Binding Prediction for Alleles With Low Data
10.1093/bioinformatics/btad780 · 2024 · External reference
The Immune Epitope Database (IEDB): 2024 Update
10.1093/nar/gkae1092 · 2025 · External reference
Allele‐Specific Motifs Revealed by Sequencing of Self‐Peptides Eluted From MHC Molecules
1991 · External reference
Allele‐Specific Motifs Revealed by Sequencing of Self‐Peptides Eluted From MHC Molecules
10.1038/351290a0 · 1991 · External reference
SYFPEITHI: Database for MHC Ligands and Peptide Motifs
10.1007/s002510050595 · 1999 · External reference
Prediction of MHC Class I Binding Peptides Using Profile Motifs
10.1016/s0198-8859(02)00432-9 · 2002 · External reference
Peptides Naturally Presented by MHC Class I Molecules
10.1146/annurev.iy.11.040193.001241 · 1993 · External reference
Dataset Size and Composition Impact the Reliability of Performance Benchmarks for Peptide‐MHC Binding Predictions
10.1186/1471-2105-15-241 · 2014 · External reference
Systematically Benchmarking Peptide‐MHC Binding Predictors: From Synthetic to Naturally Processed Epitopes
10.1371/journal.pcbi.1006457 · 2018 · External reference
HLA‐DR1001 Presents “Altered‐Self” Peptides Derived From Joint‐Associated Proteins by Accepting Citrulline in Three of Its Binding Pockets
10.1002/art.27594 · 2010 · External reference
Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands
10.1074/mcp.tir119.001641 · 2020 · External reference
NetMHCIIphosPan: A Machine Learning Tool for Predicting HLA Class II Antigen Presentation of Phosphorylated Peptides
10.1021/acs.jproteome.5c01284 · 2026 · External reference
Evolution of MHC‐Based Technologies Used for Detection of Antigen‐Responsive T Cells
10.1007/s00262-017-1971-5 · 2017 · External reference
De Novo Identification of CD4(+) T Cell Epitopes
10.1038/s41592-024-02255-0 · 2024 · External reference
MHC Class II Tetramers
10.4049/jimmunol.1102398 · 2012 · External reference
Citrulline‐Specific Th1 Cells Are Increased in Rheumatoid Arthritis and Their Frequency Is Influenced by Disease Duration and Therapy
10.1002/art.38637 · 2014 · External reference
Multi‐HLA Class II Tetramer Analyses of Citrulline‐Reactive T Cells and Early Treatment Response in Rheumatoid Arthritis
10.1186/s12865-020-00357-w · 2020 · External reference
The CD4+ T Cell Repertoire Specific for Citrullinated Peptides Shows Evidence of Immune Tolerance
10.1084/jem.20230209 · 2023 · External reference
Tetramer Visualization of Gut‐Homing Gluten‐Specific T Cells in the Peripheral Blood of Celiac Disease Patients
10.1073/pnas.0608610104 · 2007 · External reference
TCR Sequencing of Single Cells Reactive to DQ2.5‐Glia‐α2 and DQ2.5‐Glia‐ω2 Reveals Clonal Expansion and Epitope‐Specific V‐Gene Usage
10.1038/mi.2015.147 · 2016 · External reference
Discriminative T‐Cell Receptor Recognition of Highly Homologous HLA‐DQ2‐Bound Gluten Epitopes
10.1074/jbc.ra118.005736 · 2019 · External reference
CD4 T Cells Reactive to Hybrid Insulin Peptides Are Indicators of Disease Activity in the NOD Mouse
10.2337/db18-0200 · 2018 · External reference
Increased Effector Memory Insulin‐Specific CD4(+) T Cells Correlate With Insulin Autoantibodies in Patients With Recent‐Onset Type 1 Diabetes
10.2337/db17-0666 · 2017 · External reference
High‐Throughput Determination of the Antigen Specificities of T Cell Receptors in Single Cells
10.1038/nbt.4282 · 2018 · External reference
High‐Throughput and High‐Dimensional Single‐Cell Analysis of Antigen‐Specific CD8(+) T Cells
10.1038/s41590-021-01073-2 · 2021 · External reference
Simultaneous Detection of Many T‐Cell Specificities Using Combinatorial Tetramer Staining
10.1038/nmeth.1344 · 2009 · External reference
Novel T‐Cell Reactivities to Hybrid Insulin Peptides in Islet Autoantibody‐Positive At‐Risk Individuals
10.2337/db24-0611 · 2025 · External reference
Mapping T Cell Responses to Native and Neo‐Islet Antigen Epitopes in at Risk and Type 1 Diabetes Subjects
10.3389/fimmu.2021.675746 · 2021 · External reference
Citrullinated Epitopes Identified on Tumour MHC Class II by Peptide Elution Stimulate Both Regulatory and Th1 Responses and Require Careful Selection for Optimal Anti‐Tumour Responses
10.3389/fimmu.2021.764462 · 2021 · External reference
Reduced TCR‐Dependent Activation Through Citrullination of a T‐Cell Epitope Enhances Th17 Development by Disruption of the STAT3/5 Balance
10.1002/eji.201546217 · 2016 · External reference
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T Cell Antigen Discovery via Trogocytosis
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Recognition of Multiple Hybrid Insulin Peptides by a Single Highly Diabetogenic T‐Cell Receptor
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CD4+ T Cells From Individuals With Type 1 Diabetes Respond to a Novel Class of Deamidated Peptides Formed in Pancreatic Islets
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Citrullination of a Phage‐Displayed Human Peptidome Library Reveals the Fine Specificities of Rheumatoid Arthritis‐Associated Autoantibodies
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Molecular Mechanism of Phosphopeptide Neoantigen Immunogenicity
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Rheumatoid Arthritis and Citrullination
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Citrullination and Deamidation in Type 1 Diabetes: Linking Beta Cell Stress to Neoantigen‐Driven Autoimmunity
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Complementary Effects of Carbamylated and Citrullinated LL37 in Autoimmunity and Inflammation in Systemic Lupus Erythematosus
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Persistence of Elevated Deamidated Gliadin Peptide Antibodies on a Gluten‐Free Diet Indicates Nonresponsive Coeliac Disease
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Peptidylarginine Deiminases and Deiminated Proteins at the Epidermal Barrier
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Demonstration of Extracellular Peptidylarginine Deiminase (PAD) Activity in Synovial Fluid of Patients With Rheumatoid Arthritis Using a Novel Assay for Citrullination of Fibrinogen
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Neutrophil Extracellular Traps in Rheumatoid Arthritis: Pathogenic Mechanisms and Therapeutic Potential
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Mapping Citrullinated Sites in Multiple Organs of Mice Using Hypercitrullinated Library
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Enabling Global Analysis of Protein Citrullination via Biotin Thiol Tag‐Assisted Mass Spectrometry
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Intestinal Anti‐Tissue Transglutaminase2 Autoantibodies: Pathogenic and Clinical Implications for Celiac Disease
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The Oral Transglutaminase 2 Inhibitor ZED1227 Accumulates in the Villous Enterocytes in Celiac Disease Patients During Gluten Challenge and Drug Treatment
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Kidney‐Infiltrating T Cells in Murine Lupus Nephritis Are Metabolically and Functionally Exhausted
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Rheumatoid Arthritis Synovial Fibroblasts Modulate T Cell Activation
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Ultrasound‐Guided Synovial Biopsy: A Safe, Well‐Tolerated and Reliable Technique for Obtaining High‐Quality Synovial Tissue From Both Large and Small Joints in Early Arthritis Patients
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HLA‐Transgenic Mouse Models to Study Autoimmune Central Nervous System Diseases
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Synovial Fluid CD69(+)CD8(+) T Cells With Tissue‐Resident Phenotype Mediate Perforin‐Dependent Citrullination in Rheumatoid Arthritis
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