Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Problems With GO Enrichment as an Endpoint for Ecological Omics Interpretation. Local targets link to admitted publications; unresolved targets remain external evidence.
10.3389/fpls.2024.1377937/bibtex
10.3389/fpls.2024.1377937/bibtex · External reference
10.1038/s41598‐024‐60261‐w
10.1038/s41598‐024‐60261‐w · External reference
10.1371/journal.pclm.0000403
10.1371/journal.pclm.0000403 · External reference
10.1002/ece3.73007
10.1002/ece3.73007 · External reference
10.1002/jez.b.70032
10.1002/jez.b.70032 · External reference
10.1186/s12862‐025‐02378‐8
10.1186/s12862‐025‐02378‐8 · External reference
10.1111/mec.17787
10.1111/mec.17787 · External reference
10.1111/mec.17545
10.1111/mec.17545 · External reference
10.1038/nmeth.4463
10.1038/nmeth.4463 · External reference
10.1093/genetics/iyad031
10.1093/genetics/iyad031 · External reference
10.1093/nargab/lqae167
10.1093/nargab/lqae167 · External reference
10.1093/nar/gkad1020
10.1093/nar/gkad1020 · External reference
10.1038/s41467‐021‐23579‐x
10.1038/s41467‐021‐23579‐x · External reference
10.1111/1462‐2920.16238
10.1111/1462‐2920.16238 · External reference
10.1111/nph.19471
10.1111/nph.19471 · External reference
10.1093/nargab/lqaa017
10.1093/nargab/lqaa017 · External reference
10.1371/journal.pcbi.1012346
10.1371/journal.pcbi.1012346 · External reference
10.1093/nar/gkw957
10.1093/nar/gkw957 · External reference
10.1093/bioadv/vbaf023
10.1093/bioadv/vbaf023 · External reference
10.1093/bioinformatics/btad549
10.1093/bioinformatics/btad549 · External reference
10.1093/gigascience/giad088
10.1093/gigascience/giad088 · External reference
10.3389/fpls.2024.1309956/bibtex
10.3389/fpls.2024.1309956/bibtex · External reference
10.1186/s12859‐021‐04370‐7/figures/8
10.1186/s12859‐021‐04370‐7/figures/8 · External reference
10.7554/elife.73425
10.7554/elife.73425 · External reference
10.1186/s13326‐016‐0097‐6/figures/3
10.1186/s13326‐016‐0097‐6/figures/3 · External reference
10.1093/bib/bbae069
10.1093/bib/bbae069 · External reference
10.1111/mec.14528
10.1111/mec.14528 · External reference
10.1093/molbev/msab293
10.1093/molbev/msab293 · External reference
10.1007/s00018‐023‐04837‐1
10.1007/s00018‐023‐04837‐1 · External reference
10.1093/nar/gkw1108
10.1093/nar/gkw1108 · External reference
10.1093/nar/gky1055
10.1093/nar/gky1055 · External reference
10.1111/nph.18072
10.1111/nph.18072 · External reference
10.1186/s12864‐021‐07659‐2/figures/7
10.1186/s12864‐021‐07659‐2/figures/7 · External reference
10.1186/s40793‐022‐00425‐1/figures/2
10.1186/s40793‐022‐00425‐1/figures/2 · External reference
10.1021/acs.est.0c07262/asset/images/large/es0c07262_0005.jpeg
10.1021/acs.est.0c07262/asset/images/large/es0c07262_0005.jpeg · External reference
10.1007/978‐1‐0716‐1103‐6_8
10.1007/978‐1‐0716‐1103‐6_8 · External reference
10.1016/j.cej.2023.146507
10.1016/j.cej.2023.146507 · External reference
10.1093/bioinformatics/btac230
10.1093/bioinformatics/btac230 · External reference
10.1371/journal.pcbi.1010348
10.1371/journal.pcbi.1010348 · External reference
10.1073/pnas.1722151115/suppl_file/pnas.1722151115.sapp.pdf
10.1073/pnas.1722151115/suppl_file/pnas.1722151115.sapp.pdf · External reference
10.1073/pnas.1920779117/suppl_file/pnas.1920779117.sapp.pdf
10.1073/pnas.1920779117/suppl_file/pnas.1920779117.sapp.pdf · External reference
10.1128/msystems.00951‐22/suppl_file/msystems.00951‐22‐s0009.docx
10.1128/msystems.00951‐22/suppl_file/msystems.00951‐22‐s0009.docx · External reference
10.1016/j.chemosphere.2023.138886
10.1016/j.chemosphere.2023.138886 · External reference
10.3390/e22040427
10.3390/e22040427 · External reference
10.1093/database/baac062
10.1093/database/baac062 · External reference
10.1093/g3journal/jkad072
10.1093/g3journal/jkad072 · External reference
10.3389/fmars.2021.649909/bibtex
10.3389/fmars.2021.649909/bibtex · External reference
10.1109/tcbbio.2024.3498458
10.1109/tcbbio.2024.3498458 · External reference
10.1016/j.cmpb.2015.12.002
10.1016/j.cmpb.2015.12.002 · External reference
10.1111/mec.16588
10.1111/mec.16588 · External reference
10.1007/s10499‐026‐02618‐8
10.1007/s10499‐026‐02618‐8 · External reference
10.1093/bib/bbac003
10.1093/bib/bbac003 · External reference
10.3390/biology9090295
10.3390/biology9090295 · External reference
10.1111/eva.12178
10.1111/eva.12178 · External reference
10.1007/978‐1‐0716‐3838‐5_20/figures/5
10.1007/978‐1‐0716‐3838‐5_20/figures/5 · External reference
10.1002/pmic.201800070
10.1002/pmic.201800070 · External reference
10.1111/nph.17697
10.1111/nph.17697 · External reference
10.1093/gigascience/giac023
10.1093/gigascience/giac023 · External reference
10.3390/cells10020334
10.3390/cells10020334 · External reference
10.1111/mec.14584
10.1111/mec.14584 · External reference
10.1111/mec.17378
10.1111/mec.17378 · External reference
10.1016/j.isci.2024.109355
10.1016/j.isci.2024.109355 · External reference
10.1002/bies.201800169
10.1002/bies.201800169 · External reference
10.1038/s41467‐021‐22862‐1
10.1038/s41467‐021‐22862‐1 · External reference
10.1101/gr.240663.118
10.1101/gr.240663.118 · External reference
10.1128/aem.00639‐16/suppl_file/zam999117234sd2.xlsx
10.1128/aem.00639‐16/suppl_file/zam999117234sd2.xlsx · External reference
10.1007/978‐1‐4939‐3743‐1_14
10.1007/978‐1‐4939‐3743‐1_14 · External reference
10.1093/bib/bbz158
10.1093/bib/bbz158 · External reference
10.3390/genes14010031
10.3390/genes14010031 · External reference
10.1093/bioinformatics/bts727
10.1093/bioinformatics/bts727 · External reference
10.1038/s41467‐021‐23303‐9
10.1038/s41467‐021‐23303‐9 · External reference
10.1093/nar/gkae1038
10.1093/nar/gkae1038 · External reference
10.1128/msystems.00417‐22
10.1128/msystems.00417‐22 · External reference
10.1016/j.gpb.2022.04.008
10.1016/j.gpb.2022.04.008 · External reference
10.1016/j.tree.2022.07.004/asset/3d22bbfc‐b140‐4ff4‐a92c‐110d92ba1a2a/main.assets/gr1.jpg
10.1016/j.tree.2022.07.004/asset/3d22bbfc‐b140‐4ff4‐a92c‐110d92ba1a2a/main.assets/gr1.jpg · External reference
10.1038/s41467‐024‐49679‐y
10.1038/s41467‐024‐49679‐y · External reference
10.1038/s41467‐025‐57957‐6
10.1038/s41467‐025‐57957‐6 · External reference
10.1016/j.xgen.2024.100586
10.1016/j.xgen.2024.100586 · External reference
10.1111/1755‐0998.13106
10.1111/1755‐0998.13106 · External reference
10.1186/s12870‐021‐03406‐7
10.1186/s12870‐021‐03406‐7 · External reference
10.1038/s41598‐018‐19333‐x
10.1038/s41598‐018‐19333‐x · External reference
10.1111/mec.15720
10.1111/mec.15720 · External reference
10.1186/s13059‐020‐1949‐z/figures/4
10.1186/s13059‐020‐1949‐z/figures/4 · External reference
10.1038/s41437‐020‐00380‐y
10.1038/s41437‐020‐00380‐y · External reference
10.1016/j.tree.2021.01.005/asset/0530a886‐2640‐4ad2‐9a86‐58d67a410fdb/main.assets/b1.jpg
10.1016/j.tree.2021.01.005/asset/0530a886‐2640‐4ad2‐9a86‐58d67a410fdb/main.assets/b1.jpg · External reference
10.1093/gigascience/giy103
10.1093/gigascience/giy103 · External reference
10.1186/1756‐0500‐4‐267/tables/1
10.1186/1756‐0500‐4‐267/tables/1 · External reference
10.1093/bioinformatics/btad637
10.1093/bioinformatics/btad637 · External reference
10.1093/bioinformatics/btu031
10.1093/bioinformatics/btu031 · External reference
10.1371/journal.pcbi.1002375
10.1371/journal.pcbi.1002375 · External reference
10.1146/annurev‐biochem‐030409‐143718/1
10.1146/annurev‐biochem‐030409‐143718/1 · External reference
10.3390/genes14020416
10.3390/genes14020416 · External reference
10.3390/microorganisms8050744
10.3390/microorganisms8050744 · External reference
10.1371/journal.pone.0176129
10.1371/journal.pone.0176129 · External reference
10.1128/mbio.03714‐21
10.1128/mbio.03714‐21 · External reference
10.1038/s42003‐024‐06454‐5
10.1038/s42003‐024‐06454‐5 · External reference
10.1093/nar/gkab1034
10.1093/nar/gkab1034 · External reference
10.3389/fbioe.2019.00229/bibtex
10.3389/fbioe.2019.00229/bibtex · External reference
10.1371/journal.pone.0130383
10.1371/journal.pone.0130383 · External reference
10.1093/bioinformatics/btz595
10.1093/bioinformatics/btz595 · External reference
10.1093/bioinformatics/btac256
10.1093/bioinformatics/btac256 · External reference
10.1093/plcell/koac267
10.1093/plcell/koac267 · External reference
10.1016/j.cell.2021.04.005/asset/16c497ea‐86d1‐4a20‐9a9d‐4812f7786df4/main.assets/gr6.jpg
10.1016/j.cell.2021.04.005/asset/16c497ea‐86d1‐4a20‐9a9d‐4812f7786df4/main.assets/gr6.jpg · External reference
10.3389/fgene.2021.713230/xml
10.3389/fgene.2021.713230/xml · External reference
10.1016/j.compbiolchem.2021.107455
10.1016/j.compbiolchem.2021.107455 · External reference
10.1186/s12870‐023‐04712‐y/figures/6
10.1186/s12870‐023‐04712‐y/figures/6 · External reference
10.1093/aobpla/plab043
10.1093/aobpla/plab043 · External reference
10.1093/plcell/koaf169
10.1093/plcell/koaf169 · External reference
10.3389/fmicb.2022.1040579/bibtex
10.3389/fmicb.2022.1040579/bibtex · External reference
10.3389/fgene.2021.645443/bibtex
10.3389/fgene.2021.645443/bibtex · External reference
10.1111/ede.70036
10.1111/ede.70036 · External reference
10.1111/nph.17892
10.1111/nph.17892 · External reference
10.3390/ijms232214172/s1
10.3390/ijms232214172/s1 · External reference
10.1093/bib/bbac409
10.1093/bib/bbac409 · External reference
10.1186/s12864‐019‐5817‐8/figures/4
10.1186/s12864‐019‐5817‐8/figures/4 · External reference
10.3389/fgene.2020.00654/bibtex
10.3389/fgene.2020.00654/bibtex · External reference
10.1093/bib/bbae372
10.1093/bib/bbae372 · External reference
10.1093/plcell/koaf195
10.1093/plcell/koaf195 · External reference
10.1371/journal.pcbi.1011254
10.1371/journal.pcbi.1011254 · External reference
10.1093/gbe/evaa132
10.1093/gbe/evaa132 · External reference
10.1111/mec.17758
10.1111/mec.17758 · External reference
10.1093/bioinformatics/btae552
10.1093/bioinformatics/btae552 · External reference
10.1038/s41592‐022‐01431‐4
10.1038/s41592‐022‐01431‐4 · External reference
10.1038/s41467‐020‐18795‐w
10.1038/s41467‐020‐18795‐w · External reference
10.1038/s41598‐018‐30188‐0
10.1038/s41598‐018‐30188‐0 · External reference
10.3390/genes15060658
10.3390/genes15060658 · External reference
10.1016/j.crmeth.2023.100498
10.1016/j.crmeth.2023.100498 · External reference
10.1111/1755‐0998.13285
10.1111/1755‐0998.13285 · External reference
10.3389/fpls.2023.1088643/xml
10.3389/fpls.2023.1088643/xml · External reference
10.1093/bib/bbac143
10.1093/bib/bbac143 · External reference
10.1002/ece3.71453
10.1002/ece3.71453 · External reference
10.1371/journal.pcbi.1012745
10.1371/journal.pcbi.1012745 · External reference
10.1016/j.gde.2026.102478
10.1016/j.gde.2026.102478 · External reference
10.1111/1462‐2920.16637
10.1111/1462‐2920.16637 · External reference
10.1093/nar/gkac330
10.1093/nar/gkac330 · External reference
10.3390/genes15050566/s1
10.3390/genes15050566/s1 · External reference
10.1111/nph.70220
10.1111/nph.70220 · External reference
10.1038/s41477‐023‐01439‐4
10.1038/s41477‐023‐01439‐4 · External reference
10.1016/j.copbio.2017.07.015
10.1016/j.copbio.2017.07.015 · External reference
10.1186/s40168‐022‐01391‐z
10.1186/s40168‐022‐01391‐z · External reference
10.1038/s43247‐025‐02167‐7
10.1038/s43247‐025‐02167‐7 · External reference
10.3390/genes12030352
10.3390/genes12030352 · External reference
10.3389/fgene.2021.695399/xml
10.3389/fgene.2021.695399/xml · External reference
10.1186/s12859‐021‐04414‐y/figures/7
10.1186/s12859‐021‐04414‐y/figures/7 · External reference
10.1186/s12859‐022‐04828‐2/figures/4
10.1186/s12859‐022‐04828‐2/figures/4 · External reference
10.1002/jez.b.23287
10.1002/jez.b.23287 · External reference
10.1016/j.prostaglandins.2025.107053
10.1016/j.prostaglandins.2025.107053 · External reference
10.1016/j.tree.2012.07.014
10.1016/j.tree.2012.07.014 · External reference
10.3390/microorganisms12122665/s1
10.3390/microorganisms12122665/s1 · External reference
10.1016/j.celrep.2024.113747/asset/5670f915‐4242‐4afc‐a2fe‐9cca5feaef3e/main.assets/gr1.jpg
10.1016/j.celrep.2024.113747/asset/5670f915‐4242‐4afc‐a2fe‐9cca5feaef3e/main.assets/gr1.jpg · External reference
10.1093/database/baaf036
10.1093/database/baaf036 · External reference
10.1002/mas.21808
10.1002/mas.21808 · External reference
10.1016/j.scitotenv.2022.153322
10.1016/j.scitotenv.2022.153322 · External reference
10.1016/j.copbio.2023.103048
10.1016/j.copbio.2023.103048 · External reference
10.1371/journal.pone.0130500
10.1371/journal.pone.0130500 · External reference
10.1111/mec.12309
10.1111/mec.12309 · External reference
10.1111/mec.17626
10.1111/mec.17626 · External reference
10.1152/physiolgenomics.00043.2013/suppl_file/tables2.xlsx
10.1152/physiolgenomics.00043.2013/suppl_file/tables2.xlsx · External reference
10.1038/s41596‐018‐0103‐9
10.1038/s41596‐018‐0103‐9 · External reference
10.1073/pnas.2411831122/suppl_file/pnas.2411831122.sd13.csv
10.1073/pnas.2411831122/suppl_file/pnas.2411831122.sd13.csv · External reference
10.1093/nar/gkac1080
10.1093/nar/gkac1080 · External reference
10.7554/elife.93429
10.7554/elife.93429 · External reference
10.1073/pnas.1400592111/suppl_file/pnas.1400592111.sd03.txt
10.1073/pnas.1400592111/suppl_file/pnas.1400592111.sd03.txt · External reference
10.3390/biotech14030058
10.3390/biotech14030058 · External reference
10.1186/s12864‐018‐5032‐z/figures/8
10.1186/s12864‐018‐5032‐z/figures/8 · External reference
10.1016/b978-0-323-89775-4.00015-8
10.1016/b978-0-323-89775-4.00015-8 · 2022 · External reference
10.1038/s41467‐017‐02391‐6
10.1038/s41467‐017‐02391‐6 · External reference
10.1080/15592324.2019.1665455
10.1080/15592324.2019.1665455 · External reference
10.1016/j.tree.2014.11.009
10.1016/j.tree.2014.11.009 · External reference
10.3390/jof8070724/s1
10.3390/jof8070724/s1 · External reference
10.1111/nph.20026
10.1111/nph.20026 · External reference
10.1186/s12859‐017‐1571‐6/figures/7
10.1186/s12859‐017‐1571‐6/figures/7 · External reference
10.1111/mec.16377
10.1111/mec.16377 · External reference
10.1073/pnas.2516477123
10.1073/pnas.2516477123 · External reference
10.1186/s12859‐020‐03794‐x/tables/2
10.1186/s12859‐020‐03794‐x/tables/2 · External reference
10.1093/bioinformatics/btac117
10.1093/bioinformatics/btac117 · External reference
10.1093/g3journal/jkae156
10.1093/g3journal/jkae156 · External reference
10.1093/bioinformatics/btaf195
10.1093/bioinformatics/btaf195 · External reference
10.1016/j.ygeno.2022.110528
10.1016/j.ygeno.2022.110528 · External reference
10.1111/eva.12935
10.1111/eva.12935 · External reference
10.1186/s12859‐018‐2355‐3/figures/5
10.1186/s12859‐018‐2355‐3/figures/5 · External reference
10.1016/j.cels.2022.03.001
10.1016/j.cels.2022.03.001 · External reference
10.1186/s13059‐018‐1520‐3/metrics
10.1186/s13059‐018‐1520‐3/metrics · External reference
10.1093/bib/bbac219
10.1093/bib/bbac219 · External reference
10.1093/nar/gkac1000
10.1093/nar/gkac1000 · External reference
10.1186/1471‐2105‐13‐136/tables/8
10.1186/1471‐2105‐13‐136/tables/8 · External reference
10.1073/pnas.2100678118/suppl_file/pnas.2100678118.sd07.xlsx
10.1073/pnas.2100678118/suppl_file/pnas.2100678118.sd07.xlsx · External reference
10.1038/ncomms15599
10.1038/ncomms15599 · External reference
10.1038/s41586‐023‐06139‐9
10.1038/s41586‐023‐06139‐9 · External reference
10.1007/978‐1‐4939‐3743‐1_2
10.1007/978‐1‐4939‐3743‐1_2 · External reference
10.1038/s41588‐019‐0500‐1
10.1038/s41588‐019‐0500‐1 · External reference
10.1186/s12859‐022‐04557‐6/tables/6
10.1186/s12859‐022‐04557‐6/tables/6 · External reference
10.1186/s13059‐015‐0761‐7/metrics
10.1186/s13059‐015‐0761‐7/metrics · External reference
10.1038/s41598‐018‐23395‐2
10.1038/s41598‐018‐23395‐2 · External reference
10.1093/bioinformatics/bty929
10.1093/bioinformatics/bty929 · External reference
10.1093/molbev/msaf148
10.1093/molbev/msaf148 · External reference
10.1038/s41467‐020‐14766‐3
10.1038/s41467‐020‐14766‐3 · External reference
10.3389/fgene.2020.00457
10.3389/fgene.2020.00457 · External reference
10.1111/ppl.14441
10.1111/ppl.14441 · External reference
10.1093/nar/gkac420
10.1093/nar/gkac420 · External reference
10.7554/elife.41855
10.7554/elife.41855 · External reference
10.1021/acs.jproteome.0c00926/suppl_file/pr0c00926_si_001.pdf
10.1021/acs.jproteome.0c00926/suppl_file/pr0c00926_si_001.pdf · External reference
10.3390/genes12101645
10.3390/genes12101645 · External reference
10.1073/pnas.1820691116/suppl_file/pnas.1820691116.sd01.xlsx
10.1073/pnas.1820691116/suppl_file/pnas.1820691116.sd01.xlsx · External reference
10.1128/msystems.01280‐22
10.1128/msystems.01280‐22 · External reference
10.1002/evl3.154
10.1002/evl3.154 · External reference
10.1186/s12859‐020‐3447‐4
10.1186/s12859‐020‐3447‐4 · External reference
10.1038/s41540‐022‐00232‐x
10.1038/s41540‐022‐00232‐x · External reference
10.3390/genes14050989/s1
10.3390/genes14050989/s1 · External reference
10.1093/bioinformatics/btaa548
10.1093/bioinformatics/btaa548 · External reference
10.1371/journal.pcbi.1009935
10.1371/journal.pcbi.1009935 · External reference
10.1093/bioinformatics/btx415
10.1093/bioinformatics/btx415 · External reference
10.1098/rsob.180241
10.1098/rsob.180241 · External reference
10.1093/nar/gks461
10.1093/nar/gks461 · External reference
10.1038/s41477‐021‐00929‐7
10.1038/s41477‐021‐00929‐7 · External reference
10.1016/j.xinn.2021.100141
10.1016/j.xinn.2021.100141 · External reference
10.3389/fpls.2022.1053699/xml
10.3389/fpls.2022.1053699/xml · External reference
10.1007/s11356‐022‐20041‐3/metrics
10.1007/s11356‐022‐20041‐3/metrics · External reference
10.1002/pld3.499
10.1002/pld3.499 · External reference
10.1371/journal.pone.0284274
10.1371/journal.pone.0284274 · External reference
10.1186/s12915‐024‐02000‐1
10.1186/s12915‐024‐02000‐1 · External reference
10.1186/gb‐2010‐11‐2‐r14/tables/4
10.1186/gb‐2010‐11‐2‐r14/tables/4 · External reference
10.1038/s41467‐024‐48814‐z
10.1038/s41467‐024‐48814‐z · External reference
10.3389/fphys.2022.806171/bibtex
10.3389/fphys.2022.806171/bibtex · External reference
10.1029/2017jg004309
10.1029/2017jg004309 · External reference
10.1371/journal.pcbi.1012278
10.1371/journal.pcbi.1012278 · External reference
10.3389/fcell.2024.1431173/bibtex
10.3389/fcell.2024.1431173/bibtex · External reference
10.1038/s41598‐018‐33219‐y
10.1038/s41598‐018‐33219‐y · External reference
10.1016/j.tig.2023.01.003/asset/5dff7c8c‐de5d‐4fc3‐9859‐bcec2d04d537/main.assets/gr2.sml
10.1016/j.tig.2023.01.003/asset/5dff7c8c‐de5d‐4fc3‐9859‐bcec2d04d537/main.assets/gr2.sml · External reference
10.3389/fmars.2023.1130855/bibtex
10.3389/fmars.2023.1130855/bibtex · External reference
10.3389/fgene.2020.00400/xml
10.3389/fgene.2020.00400/xml · External reference
10.1016/j.jgg.2023.08.007
10.1016/j.jgg.2023.08.007 · External reference
10.1038/s41467‐019‐09234‐6
10.1038/s41467‐019‐09234‐6 · External reference
10.1016/j.jes.2024.02.029
10.1016/j.jes.2024.02.029 · External reference
10.1093/bioadv/vbae159
10.1093/bioadv/vbae159 · External reference
