Research graph
References from Genotyping-by-Sequencing dataset of 86 diverse rice (Oryza sativa L.) accessions comprising Indonesian local varieties, improved cultivars, and breeding lines. Local targets link to admitted publications; unresolved targets remain external evidence.
Trimmomatic: a flexible trimmer for Illumina sequence data.
10.1093/bioinformatics/btu170 · 2014 · External reference
Twelve years of SAMtools and BCFtools.
10.1093/gigascience/giab008 · 2021 · External reference
Landrace germplasm for improving yield and abiotic stress adaptation.
10.1016/j.tplants.2015.10.012 · 2016 · External reference
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species.
10.1371/journal.pone.0019379 · 2011 · External reference
Fast and accurate short read alignment with Burrows–Wheeler transform.
10.1093/bioinformatics/btp324 · 2009 · External reference
Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa.
10.1073/pnas.0603152103 · 2006 · External reference
High quality DNA extraction protocol from recalcitrant plant tissues.
10.17504/protocols.io.i8jchun · 2017 · External reference
10.1007/978-3-030-75875-2_1
10.1007/978-3-030-75875-2_1 · External reference
OsGERLP: A novel aluminum tolerance rice gene isolated from a local cultivar in Indonesia.
10.1016/j.plaphy.2021.02.019 · External reference
10.1007/978-981-97-1699-9_25
10.1007/978-981-97-1699-9_25 · 2024 · External reference
Genome-wide SNP discovery and population structure analysis of 244 Indonesian local rice accessions.
10.4308/hjb.33.1.142-152 · 2026 · External reference
Genome-wide SNP discovery, linkage mapping, and analysis of QTL for morpho-physiological traits in rice during vegetative stage under drought stress.
10.1007/s12298-021-01095-y · 2021 · External reference
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
10.1093/nar/gkq603 · 2010 · External reference
Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
10.1038/s41586-018-0063-9 · 2018 · External reference
