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References from Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines. Local targets link to admitted publications; unresolved targets remain external evidence.
On best practices in the development of bioinformatics software.
10.3389/fgene.2014.00199 · 2014 · External reference
Nextflow enables reproducible computational workflows.
10.1038/nbt.3820 · 2017 · External reference
Multiqc: summarize analysis results for multiple tools and samples in a single report.
10.1093/bioinformatics/btw354 · 2016 · External reference
The nf-core framework for community-curated bioinformatics pipelines.
10.1038/s41587-020-0439-x · 2020 · External reference
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software.
10.1093/gigascience/giz109 · 2019 · External reference
FAIR Computational Workflows.
10.1162/dint_a_00033 · 2020 · External reference
The birth of bio-data science: Trends, expectations, and applications.
10.1016/j.gpb.2020.01.002 · 2020 · External reference
Recommendations for the packaging and containerizing of bioinformatics software [version 2; peer review: 2 approved, 1 approved with reservations].
10.12688/f1000research.15140.2 · 2018 · External reference
Bioconda: sustainable and comprehensive software distribution for the life sciences.
10.1038/s41592-018-0046-7 · 2018 · External reference
bioinfo-pf-curie/geniac: version-1.0.0
External reference
bioinfo-pf-curie/geniac-demo: version-1.0.0
External reference
Using prototyping to choose a bioinformatics workflow manage-ment system.
10.1371/journal.pcbi.1008622 · 2021 · External reference
QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing [version 3; peer review: 2 approved].
10.12688/f1000research.22954.3 · 2020 · External reference
biogitflow: development workflow protocols for bioinformatics pipelines with git and gitlab.
10.12688/f1000research.24714.3 · 2020 · External reference
Singularity: Scientific containers for mobility of compute.
10.1371/journal.pone.0177459 · 2017 · External reference
bioinfo-pf-curie/geniac-demo-dsl2: version-1.0.0
2021 · External reference
Engineering bioinformatics: building reliability, performance and productivity into bioinformatics software.
10.1080/21655979.2015.1050162 · 2015 · External reference
A review of bioinformatic pipeline frameworks.
10.1093/bib/bbw020 · 2017 · External reference
Docker: Lightweight linux containers for consistent development and deployment.
2014 · External reference
Streamlining data-intensive biology with workflow systems.
10.1093/gigascience/giaa140 · 2021 · External reference
bioinfo-pf-curie/geniac-template: version-1.0.0
2021 · External reference
Scalable Workflows and Reproducible Data Analysis for Genomics.
10.1007/978-1-4939-9074-0_24 · 2019 · External reference
Practical guide for managing large-scale human genome data in research.
10.1038/s10038-020-00862-1 · 2021 · External reference
The fair guiding principles for scientific data management and stewardship.
10.1038/sdata.2016.18 · 2016 · External reference