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References from Chromosome-level genome assembly and annotation of the parthenogenetic nematode Acrobeloides nanus. Local targets link to admitted publications; unresolved targets remain external evidence.
Molecular phylogeny of Acrobeloides and Cephalobus (Nematoda: Cephalobidae) reveals paraphyletic taxa and recurrent evolution of simple labial morphology.
10.1163/156854106779799178 · 2006 · External reference
Nematodes: the worm and its relatives.
10.1371/journal.pbio.1001050 · 2011 · External reference
Evolutionary plasticity in nematode Hox gene complements and genomic loci arrange-ment.
10.1038/s41598-024-79962-3 · 2024 · External reference
A revision of the nematode family Cephalobidae Chitwood and Chitwood, 1934.
1937 · External reference
Feeding of the nematode Acrobeloides nanus. on bacteria.
1993 · External reference
A case study of soil nematode populations under intensive cucumber monoculture in hungary.
10.2478/helm-2024-0026 · 2024 · External reference
Geographic distribution of nematodes in the atacama is associated with elevation, climate gradients and parthenogenesis.
10.1038/s41467-025-67117-5 · 2026 · External reference
Namibian fairy circles: Hostile territory for soil nematodes.
10.1371/journal.pone.0315884 · 2025 · External reference
Egg development in parthenogenetic nematodes: variations in meiosis and axis formation.
10.1387/ijdb.052030vl · 2006 · External reference
Rapid adaptive divergence of life-history traits in response to abiotic stress within a natural population of a parthenogenetic nematode.
10.1098/rspb.2006.3602 · 2006 · External reference
The Life-History Traits of Soil-Dwelling Nematode (Acrobeloides sp.) Exhibit More Resilience to Water Restriction Than Caenorhabditis elegans.
10.1093/icb/icad129 · 2023 · External reference
Anhydrobiotic coiling of nematodes in soil.
1979 · External reference
Experiments on anhydrobiosis in Acrobeloides nanus (de Man, 1880) Anderson, 1986 (Nematoda).
10.1163/002825989x00232 · 1989 · External reference
Anhydrobiosis in invertebrates.
10.1303/aez.2006.15 · 2006 · External reference
Response of secondary production and its components to multiple stressors in nematode field populations.
10.1111/j.1365-2664.2007.01257.x · 2007 · External reference
Utility of nematode Acrobeloides nanus for assessing subacute toxicity of heavy metals.
10.1007/s10661-009-0891-z · 2010 · External reference
Regulative development in a nematode embryo: a hierarchy of cell fate transformations.
10.1006/dbio.1999.9423 · 1999 · External reference
Specification of gut cell fate differs significantly between the nematodes Acrobeloides nanus and Caenorhabditis elegans.
10.1006/dbio.1998.9054 · 1998 · External reference
Three sons of fortune: early embryogenesis, evolution and ecology of nematodes.
10.1002/bies.1119 · 2001 · External reference
The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression.
10.1073/pnas.1720817115 · 2018 · External reference
The Nematode Community of a Marginal Soil at Cambérène, Senegal, with Special Attention to Functional Morphology and Niche Partitioning in the Family Cephalobidae.
1992 · External reference
Characterisation of four species of the genus Acrobeloides Cobb, 1924 (Rhabditida, Cephalobidae) from xeric areas in Spain, with revision of the genus and restoration of Paracephalobus Akhtar, 1962.
10.1016/j.jcz.2024.07.006 · 2024 · External reference
The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution.
10.1038/s42003-023-05621-4 · 2023 · External reference
Revisiting genomes of non-model species with long reads yields new insights into their biology and evolution.
10.3389/fgene.2024.1308527 · 2024 · External reference
A simple approach for effective shearing and reliable concentration measurement of ultra-high-molecular-weight DNA.
10.2144/btn-2021-0051 · 2021 · External reference
Twelve years of SAMtools and BCFtools.
10.1093/gigascience/giab008 · 2021 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Basic local alignment search tool.
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
BUSCO update: novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.
10.1093/molbev/msab199 · 2021 · External reference
BlobToolKit–interactive quality assessment of genome assemblies.
10.1534/g3.119.400908 · 2020 · External reference
Minimap2: pairwise alignment for nucleotide sequences.
10.1093/bioinformatics/bty191 · 2018 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies.
10.1093/bioinformatics/btaa025 · 2020 · External reference
Foreign Contamination Screen.
2022 · External reference
Wellcome Sanger Institute. assembly-stats.
2014 · External reference
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies.
10.1093/bioinformatics/btw663 · 2016 · External reference
koszullab/hicstuff.
2020 · External reference
“instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder.”
2020 · External reference
A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes.
10.1093/g3journal/jkaa020 · 2021 · External reference
Rapid and sensitive detection of genome contamination at scale with FCS-GX.
10.1186/s13059-024-03198-7 · 2024 · External reference
JBrowse 2: a modular genome browser with views of synteny and structural variation.
10.1186/s13059-023-02914-z · 2023 · External reference
HiGlass: web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
PretextView (Paired REad TEXTure Viewer): a desktop application for viewing pretext contact maps.
2022 · External reference
Benchmarking transposable element annotation methods for creation of a streamlined, com-prehensive pipeline.
2019 · External reference
FelixKrueger/TrimGalore: v0.6.10 - add default decompression path.
2023 · External reference
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.
10.1038/s41587-019-0201-4 · 2019 · External reference
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
10.1101/gr.278090.123 · 2024 · External reference
Using native and syntenically mapped cDNA alignments to improve de novo gene finding.
10.1093/bioinformatics/btn013 · 2008 · External reference
Gene identification in novel eukaryotic genomes by self-training algorithm.
10.1093/nar/gki937 · 2005 · External reference
AGAT: Another Gff Analysis Toolkit to handle annotations in any GTF/GFF format.
2020 · External reference
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
10.1186/s12859-023-05385-y · 2023 · External reference
The mitochondrial genome of Acrobeloides varius (Cephalobomorpha) confirms non-monophyly of Tylenchina (Nematoda).
10.7717/peerj.9108 · 2020 · External reference
The genome of Litomosoides sigmodontis illuminates the origins of Y chromosomes in filarial nematodes.
10.1371/journal.pgen.1011116 · 2024 · External reference
Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.
10.1186/s12859-021-04118-3 · 2021 · External reference
Chromosome-wide evolution and sex determination in the three-sexed nematode Auanema rhodensis.
10.1534/g3.119.0011 · 2019 · External reference
Acrobeloides nanus, genome note.
10.6084/m9.figshare.31316383.v1 · 2026 · External reference