Contact and support
Need help, have a question, or want to contact the ResearchHub team?
© 2026 ResearchHub. Built for responsible scholarly connection.
Privacy-aware community infrastructureResearch graph
References from Evo 2’s perception of single nucleotide substitutions in the genes of two plant model organisms. Local targets link to admitted publications; unresolved targets remain external evidence.
Deciphering the Linguistic Blueprint of DNA: Context-Sensitive Structures, Statistical Patterns, and Regulatory Implications.
10.1186/s44342-025-00052-5 · 2025 · External reference
Quarto.
10.5281/zenodo.5960048 · 2025 · External reference
Spatial Variation in the Mutation Rate Within the Plant Shoot Apical Meristem.
10.1073/pnas.2514507122 · 2025 · External reference
Analysis of the Genome Sequence of the Flowering Plant Arabidopsis Thaliana.
10.1038/35048692 · 2000 · External reference
Advancing Regulatory Variant Effect Prediction with AlphaGenome.
10.1038/s41586-025-10014-0 · 2026 · External reference
Gene-LLMs: A Comprehensive Survey of Transformer-Based Genomic Language Models for Regulatory and Clinical Genomics.
10.3389/fgene.2025.1634882 · 2025 · External reference
Fitting Linear Mixed-Effects Models Using lme4.
10.18637/jss.v067.i01 · 2015 · External reference
On the Opportunities and Risks of Foundation Models.
10.48550/arxiv.2108.07258 · 2022 · External reference
Genome Modelling and Design Across All Domains of Life with Evo 2.
10.1038/s41586-026-10176-5 · 2026 · External reference
Genomic Language Models Could Transform Medicine but Not Yet.
10.1038/s41746-025-01603-4 · 2025 · External reference
Generative Design and Construction of Functional Plasmids with a DNA Language Model.
10.64898/2025.12.06.692736 · 2025 · External reference
The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics.
10.1101/2023.01.11.523679 · 2024 · External reference
Effect Sizes for Nonparametric Tests.
10.11613/bm.2026.010101 · 2026 · External reference
Linguistic Structure from a Bottleneck on Sequential Information Processing.
10.1038/s41562-025-02336-w · 2025 · External reference
No Gene in the Genome Makes Sense Except in the Light of Evolution.
10.1146/annurev-genom-090413-025621 · 2014 · External reference
Life as a Function: Why Transformer Architectures Struggle to Gain Genome-Level Foundational Capabilities.
10.1101/2025.01.13.632745 · 2025 · External reference
The Ensembl Genome Database Project.
10.1093/nar/30.1.38 · 2002 · External reference
Orchestrating High-Throughput Genomic Analysis with Bioconductor.
10.1038/nmeth.3252 · 2015 · External reference
Gt: Easily Create Presentation-Ready Display Tables.
2026 · External reference
The Map-Based Sequence of the Rice Genome.
10.1038/nature03895 · 2005 · External reference
“Comprehension of Computer Code Relies Primarily on Domain-General Executive Brain Regions.” Edited by Andrea E Martin, Timothy E Behrens, William Matchin, and Ina Bornkessel-Schlesewsky.
10.7554/elife.58906 · 2020 · External reference
Generative Design of Novel Bacteriophages with Genome Language Models.
10.1101/2025.09.12.675911 · 2025 · External reference
GFMBench-API: A Standardized Interface for Benchmarking Genomic Foundation Models.
10.64898/2026.02.19.706811 · 2026 · External reference
PDLLMs: A Group of Tailored DNA Large Language Models for Analyzing Plant Genomes.
10.1016/j.molp.2024.12.006 · 2025 · External reference
performance: An R Package for Assessment, Comparison and Testing of Statistical Models.
10.21105/joss.03139 · 2021 · External reference
Evo 2’s Perception of Single Nucleotide Substitutions in the Genes of Two Plant Model Organisms.
10.5281/zenodo.22011583 · External reference
Evo 2′s Perception of Single Nucleotide Substitutions in the Genes of Two Plant Model Organisms.
10.64898/2026.07.01.729829 · External reference
Comparison of Equations Describing the Ranked Frequency Distributions of Graphemes and Phonemes.
10.1080/09296179608599620 · 1996 · External reference
Artificial Intelligence Index Report 2025.
10.48550/arxiv.2504.07139 · 2025 · External reference
Semantic Design of Functional de Novo Genes from a Genomic Language Model.
10.1038/s41586-025-09749-7 · 2025 · External reference
10.18653/v1/2021.deelio-1.5
10.18653/v1/2021.deelio-1.5 · 2021 · External reference
The Coefficient of Determination r 2 and Intra-Class Correlation Coefficient from Generalized Linear Mixed-Effects Models Revisited and Expanded.
10.1098/rsif.2017.0213 · 2017 · External reference
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA.
10.48550/arxiv.2412.05430 · 2024 · External reference
Genome-Wide Functional Annotation of Variants: A Systematic Review of State-of-the-Art Tools, Techniques and Resources.
10.3389/fphar.2025.1474026 · 2025 · External reference
Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review.
10.1146/annurev-genom-112921-123710 · 2022 · External reference
Causes of Mutation Rate Variability in Plant Genomes.
10.1146/annurev-arplant-070522-054109 · 2023 · External reference
H3K4me1 Recruits DNA Repair Proteins in Plants.
10.1093/plcell/koae089 · 2024 · External reference
A Practical Guide for Evaluating LLMs and LLM-Reliant Systems.
10.48550/arxiv.2506.13023 · 2025 · External reference
The Language of Genes.
10.1038/nature01255 · 2002 · External reference
A Comprehensive Survey of Genome Language Models in Bioinformatics.
10.1093/bib/bbaf724 · 2026 · External reference
Leveraging Large Language Models to Predict Antibiotic Resistance in Mycobacterium Tuberculosis.
10.1093/bioinformatics/btaf232 · 2025 · External reference
Reticulate: Interface to’Python’.
2025 · External reference
Renv: Project Environments.
2026 · External reference
De Novo Gene Birth.
10.1371/journal.pgen.1008160 · 2019 · External reference
A Critique and Improvement of the ‘CL’ Common Language Effect Size Statistics of McGraw and Wong.
10.2307/1165329 · 2000 · External reference
10.1007/978-3-319-24277-4
10.1007/978-3-319-24277-4 · 2016 · External reference
Welcome to the tidyverse.
10.21105/joss.01686 · 2019 · External reference
Ensembl Genomes 2022: An Expanding Genome Resource for Non-Vertebrates.
10.1093/nar/gkab1007 · 2021 · External reference
10.1016/j.csbj.2025.01.011 · 2025 · Admitted local publication
DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome.
10.48550/arxiv.2306.15006 · 2024 · External reference
