Research graph
References from ERGA-BGE reference genome of Placobdella costata: an ectoparasitic glossiphoniid leech of freshwater turtles with a Palearctic distribution. Local targets link to admitted publications; unresolved targets remain external evidence.
The Ensembl gene annotation system.
10.1093/database/baw093 · 2016 · External reference
MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.
10.1111/1755-0998.13160 · 2020 · External reference
Sanger Tree of Life HMW DNA fragmentation: diagenode Megaruptor®3 for LI pacBio.
10.17504/protocols.io.81wgbxzq3lpk/v1 · 2023 · External reference
Placobdella nabeulensis sp. nov. (Hirudinea: Glossiphoniidae), a new glossiphoniiform leech from Palearctic North Africa.
10.1007/s11033-023-08594-z · 2023 · External reference
Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life.
10.12688/wellcomeopenres.18658.1 · 2023 · External reference
Sucking of Human blood by Placobdella costata (O. F. Müller, 1846) (Hirudinida: Glossiphoniidae): Case study with notes on body form.
10.1002/ece3.8261 · 2021 · External reference
Snail plots are badges of genome assembly quality.
10.1093/g3journal/jkag074 · 2026 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Sanger Tree of Life wet laboratory protocol collection V1.
10.17504/protocols.io.8epv5xxy6g1b/v1 · External reference
Sanger Tree of Life sample homogenisation: PowerMash.
10.17504/protocols.io.5qpvo3r19v4o/v1 · External reference
JBrowse 2: a modular genome browser with views of synteny and structural variation.
10.1186/s13059-023-02914-z · 2023 · External reference
Sanger Tree of Life RNA Extraction: Automated MagMax™ mirVana.
10.17504/protocols.io.6qpvr36n3vmk/v1 · 2023 · External reference
Haemogregarines from western Palaearctic freshwater turtles (genera Emys, Mauremys) are conspecific with Haemogregarina stepanowi Danilewsky, 1885.
10.1017/s0031182013001820 · 2014 · External reference
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.
10.1093/bioinformatics/btac460 · 2022 · External reference
Enright AJ: miRBase: microRNA sequences, targets and gene nomenclature.
10.1093/nar/gkj112 · 2006 · External reference
PretextView (Paired REad TEXTure Viewer): a desktop application for viewing pretext contact maps.
2022 · External reference
Significantly improving the quality of genome assemblies through curation.
10.1093/gigascience/giaa153 · 2021 · External reference
Sanger Tree of Life sample preparation: triage and dissection.
10.17504/protocols.io.x54v9prmqg3e/v1 · 2023 · External reference
Non-coding RNA analysis using the Rfam database.
10.1002/cpbi.51 · 2018 · External reference
HiGlass: web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
The evolution of parental care in freshwater leeches.
10.1078/1431-7613-00034 · 2001 · External reference
Extensive sampling sheds light on species-level diversity in Palearctic Placobdella (Annelida: Clitellata: Glossiphoniiformes).
10.1007/s10750-021-04786-5 · 2022 · External reference
Bacterial endosymbionts of Placobdella (Annelida: Hirudinea: Glossiphoniidae): phylogeny, genetic distance, and vertical transmission.
10.1007/s10750-019-04175-z · 2020 · External reference
BUSCO: Assessing genomic data quality and beyond.
10.1002/cpz1.323 · 2021 · External reference
Biodiversity: An atlas of European reference genomes.
10.1038/d41586-023-02229-w · 2023 · External reference
Infernal 1.1: 100-fold faster RNA homology searches.
10.1093/bioinformatics/btt509 · 2013 · External reference
Quality assessment of gene repertoire annotations with OMArk.
10.1038/s41587-024-02147-w · 2025 · External reference
Sanger Tree of Life HMW DNA extraction: automated MagAttract v.3.
10.17504/protocols.io.4r3l21684g1y/v1 · External reference
Sanger Tree of Life fragmented DNA clean up: automated SPRI V.2.
10.17504/protocols.io.q26g7p1wkgwz/v2 · External reference
sanger-tol/treeval v1.0.0 – Ancient Atlantis.
10.5281/zenodo.10047654 · 2023 · External reference
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
10.1016/j.cell.2014.11.021 · 2014 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
Phylogenetic evaluation of systematics and biogeography of the leech family Glossiphoniidae.
10.1071/is04034 · 2005 · External reference
UniProt: a worldwide hub of protein knowledge.
10.1093/nar/gkae1010 · 2019 · External reference
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
10.1186/s12859-023-05385-y · 2023 · External reference
10.1109/ipdps.2019.00041
10.1109/ipdps.2019.00041 · 2019 · External reference
YaHS: Yet another Hi-C Scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
