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References from ERGA-BGE reference genome of the European bladdernut (Staphylea pinnata). Local targets link to admitted publications; unresolved targets remain external evidence.
The Ensembl gene annotation system.
10.1093/database/baw093 · 2016 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
UniProt: A worldwide hub of protein knowledge.
10.1093/nar/gky1049 · 2019 · External reference
miRBase: microRNA sequences, targets and gene nomenclature.
10.1093/nar/gkj112 · 2006 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies.
10.1093/bioinformatics/btaa025 · 2020 · External reference
PretextView (Paired REad TEXTure Viewer): A desktop application for viewing pretext contact maps.
2022 · External reference
BUSCO: Assessing Genomic Data Quality and Beyond.
10.1002/cpz1.323 · 2021 · External reference
Biodiversity: An atlas of European reference genomes.
10.1038/d41586-023-02229-w · 2023 · External reference
Rfam 12.0: Updates to the RNA families database.
10.1093/nar/gku1063 · 2015 · External reference
Infernal 1.1: 100-fold faster RNA homology searches.
10.1093/bioinformatics/btt509 · 2013 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
HMW DNA extraction for Long Read Sequencing using CTAB.
10.17504/protocols.io.bp2l694yzlqe/v1 · 2022 · External reference
High molecular weight DNA extraction from recalcitrant plant species for third generation sequencing.
10.1038/protex.2018.059 · 2018 · External reference
YaHS: Yet another Hi-C scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
