Research graph
References from ERGA-BGE reference genome of the bladderpod Alyssoides utriculata (L.) Medik. (Brassicaceae), a yellow-flowering shrub native to Switzerland. Local targets link to admitted publications; unresolved targets remain external evidence.
BlobToolKit–interactive quality assessment of genome assemblies.
10.1534/g3.119.400908 · 2020 · External reference
fastp: an ultra-fast all-in-one FASTQ preprocessor.
10.1093/bioinformatics/bty560 · 2018 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Galaxy Workflow ERGA-BGE Genome Report ASM analyses (one-asm Long Reads + HiC).
10.48546/workflowhub.workflow.1104.1 · 2024 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies.
10.1093/bioinformatics/btaa025 · 2020 · External reference
PretextView (Paired REad TEXTure Viewer): A desktop application for viewing pretext contact maps.
2022 · External reference
BUSCO update: Novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.
10.1093/molbev/msab199 · 2021 · External reference
IAPT/IOPB chromosome data 1.
10.2307/25065590 · 2006 · External reference
Cutadapt removes adapter sequences from high-throughput sequencing reads.
10.14806/ej.17.1.200 · 2011 · External reference
Biodiversity: An atlas of European reference genomes.
10.1038/d41586-023-02229-w · 2023 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
10.1038/s41467-020-14998-3 · 2020 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
Rapid and sensitive detection of genome contamination at scale with FCS-GX.
2024 · External reference
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
10.1186/s12859-023-05385-y · 2023 · External reference
YaHS: yet another Hi-C scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
Oatk: a de novo assembly tool for complex plant organelle genomes.
10.1186/s13059-025-03676-6 · 2025 · External reference
