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References from The genome sequence of the Tufted Button, Acleris cristana (Denis & Schiffermüller, 1775). Local targets link to admitted publications; unresolved targets remain external evidence.
Cooler: Scalable storage for Hi-C data and other genomically labeled arrays.
10.1093/bioinformatics/btz540 · 2020 · External reference
The Ensembl gene annotation system.
10.1093/database/baw093 · 2016 · External reference
MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.
10.1111/1755-0998.13160 · 2020 · External reference
Basic Local Alignment Search Tool.
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
UniProt: The Universal Protein Knowledgebase in 2023.
2023 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND.
2021 · External reference
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.
10.1534/g3.119.400908 · 2020 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Twelve years of SAMtools and BCFtools.
10.1093/gigascience/giab008 · 2021 · External reference
Nextflow enables reproducible computational workflows.
10.1038/nbt.3820 · 2017 · External reference
Acleris cristana (Denis & Schiffermüller, 1775), GBIF Backbone Taxonomy.
External reference
Identifying and removing haplotypic duplication in primary genome assemblies.
10.1093/bioinformatics/btaa025 · 2020 · External reference
PretextView (Paired REad TEXTure Viewer): A desktop application for viewing pretext contact maps.
External reference
10.1093/gigascience/giaa153
10.1093/gigascience/giaa153 · 2021 · External reference
HiGlass: Web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
Minimap2: Pairwise alignment for nucleotide sequences.
10.1093/bioinformatics/bty191 · 2018 · External reference
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.
10.1093/molbev/msab199 · 2021 · External reference
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
10.1016/j.cell.2014.11.021 · 2014 · External reference
Towards complete and error-free genome assemblies of all vertebrate species.
10.1038/s41586-021-03451-0 · 2021 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
NCBI taxonomy: A comprehensive update on curation, resources and tools.
10.1093/database/baaa062 · 2020 · External reference
Chromosomal Evolution in Tortricid Moths: Conserved Karyotypes with Diverged Features.
10.1371/journal.pone.0064520 · 2013 · External reference
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
10.1093/bioinformatics/btv351 · 2015 · External reference
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio High Fidelity reads.
10.1101/2022.12.23.521667 · 2022 · External reference
UniProt: a worldwide hub of protein knowledge.
10.1093/nar/gky1049 · 2019 · External reference
10.1109/ipdps.2019.00041
10.1109/ipdps.2019.00041 · 2019 · External reference
10.1093/bioinformatics/btac808
10.1093/bioinformatics/btac808 · 2023 · External reference
