Research graph
References from The genome sequence of a coronate scyphozoan jellyfish, Nausithoe racemosa (Komai, 1936) (Coronatae: Nausithoidae), and a metagenome-assembled genome of the associated cyanobacterium Moorena producens. Local targets link to admitted publications; unresolved targets remain external evidence.
A global estimate of genetic and geographic differentiation in macromedusae—implications for identifying the causes of jellyfish blooms.
10.3354/meps12521 · 2018 · External reference
Basic Local Alignment Search Tool.
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
10.1007/978-94-009-1497-1
10.1007/978-94-009-1497-1 · 1997 · External reference
UniProt: The Universal Protein Knowledgebase in 2023.
10.1093/nar/gkac1052 · 2023 · External reference
Evolutionary relationships among scyphozoan jellyfish families based on complete taxon sampling and phylogenetic analyses of 18S and 28S ribosomal DNA.
10.1093/icb/icq074 · 2010 · External reference
High-quality metagenome assembly from long accurate reads with metaMDBG.
10.1038/s41587-023-01983-6 · 2024 · External reference
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
10.1038/nbt.3893 · 2017 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND.
10.1038/s41592-021-01101-x · 2021 · External reference
BlobToolKit – interactive quality assessment of genome assemblies.
10.1534/g3.119.400908 · 2020 · External reference
GTDB-Tk v2: Memory friendly classification with the genome taxonomy database.
10.1093/bioinformatics/btac672 · 2022 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with Hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Haplotype-resolved assembly of diploid genomes without parental data.
10.1038/s41587-022-01261-x · 2022 · External reference
Phylogeny of Medusozoa and the evolution of cnidarian life cycles.
10.1046/j.1420-9101.2002.00403.x · 2002 · External reference
Twelve years of SAMtools and BCFtools.
10.1093/gigascience/giab008 · 2021 · External reference
Review of the diversity, traits, and ecology of zooxanthellate jellyfishes.
10.1007/s00227-019-3581-6 · 2019 · External reference
MultiQC: Summarize analysis results for multiple tools and samples in a single report.
10.1093/bioinformatics/btw354 · 2016 · External reference
The nf-core framework for community-curated bioinformatics pipelines.
10.1038/s41587-020-0439-x · 2020 · External reference
Gfastats: Conversion, evaluation and manipulation of genome sequences using assembly graphs.
10.1093/bioinformatics/btac460 · 2022 · External reference
Evolution and development of scyphozoan jellyfish.
10.1111/brv.12393 · 2018 · External reference
Genetic and behavioral variation in motile marine holobionts (Scyphozoa–Symbiodiniaceae).
2024 · External reference
The ecology and phylogeny of the Mediterranean Nausithoidae (Cnidaria, Scyphozoa).
2007 · External reference
On the path to reference genomes for all biodiversity: Lessons learned and laboratory protocols created in the Sanger Tree of Life core laboratory over the first 2000 species.
10.1101/2025.04.11.648334 · 2025 · External reference
Significantly improving the quality of genome assemblies through curation.
10.1093/gigascience/giaa153 · 2021 · External reference
The holopelagic life cycle of the deep-sea medusa Periphylla periphylla (Scyphozoa, Coronatae).
10.1080/00364827.1999.10420451 · 1999 · External reference
HiGlass: Web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
Bericht über einige im Herbste 1852 in Messina angestellte vergleichend-anatomische Untersuchungen.
1853 · External reference
Singularity: Scientific containers for mobility of compute.
10.1371/journal.pone.0177459 · 2017 · External reference
Systematic revision of Symbiodiniaceae highlights the antiquity and diversity of coral endosymbionts.
10.1016/j.cub.2018.07.008 · 2018 · External reference
Minimap2: Pairwise alignment for nucleotide sequences.
10.1093/bioinformatics/bty191 · 2018 · External reference
BUSCO update: Novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.
10.1093/molbev/msab199 · 2021 · External reference
Docker: Lightweight Linux containers for consistent development and deployment.
10.5555/2600239.2600241 · 2014 · External reference
A morphological review of the jellyfish genus Nausithoe Kölliker, 1853 (Nausithoideae, Coronatae, Scyphozoa, Cnidaria).
10.11646/zootaxa.5336.1.1 · 2023 · External reference
Coronatae Vanhöffen, 1892 in Ocean Biodiversity Information System.
2026 · External reference
dRep: A tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.
10.1038/ismej.2017.126 · 2017 · External reference
CheckM: Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
10.1101/gr.186072.114 · 2015 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
10.1038/s41467-020-14998-3 · 2020 · External reference
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
10.1016/j.cell.2014.11.021 · 2014 · External reference
Towards complete and error-free genome assemblies of all vertebrate species.
10.1038/s41586-021-03451-0 · 2021 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
MAGScoT: A fast, lightweight and accurate bin-refinement tool.
10.1093/bioinformatics/btac694 · 2022 · External reference
NCBI taxonomy: A comprehensive update on curation, resources and tools.
10.1093/database/baaa062 · 2020 · External reference
Prokka: Rapid prokaryotic genome annotation.
10.1093/bioinformatics/btu153 · 2014 · External reference
Gymnodinium linucheae sp. Nov.: The dinoflagellate symbiont of the jellyfish Linuche unguiculata.
10.1080/09670269500650911 · 1995 · External reference
MitoHiFi: A Python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
10.1186/s12859-023-05385-y · 2023 · External reference
10.1109/ipdps.2019.00041
10.1109/ipdps.2019.00041 · 2019 · External reference
YaHS: Yet another Hi-C scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
