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References from The genome sequence of Heath Groundsel,Senecio sylvaticus L., 1753 (Asterales: Asteraceae). Local targets link to admitted publications; unresolved targets remain external evidence.
Basic Local Alignment Search Tool.
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
UniProt: The Universal Protein Knowledgebase in 2023.
10.1093/nar/gkac1052 · 2023 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND.
10.1038/s41592-021-01101-x · 2021 · External reference
BlobToolKit – interactive quality assessment of genome assemblies.
10.1534/g3.119.400908 · 2020 · External reference
Silica gel: An ideal material for field preservation of leaf samples for DNA studies.
10.2307/1222975 · 1991 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with Hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Haplotype-resolved assembly of diploid genomes without parental data.
10.1038/s41587-022-01261-x · 2022 · External reference
Twelve years of SAMtools and BCFtools.
10.1093/gigascience/giab008 · 2021 · External reference
Plant genome size estimation by flow cytometry: Inter-laboratory comparison.
10.1093/oxfordjournals.aob.a010312 · 1998 · External reference
MultiQC: Summarize analysis results for multiple tools and samples in a single report.
10.1093/bioinformatics/btw354 · 2016 · External reference
The nf-core framework for community-curated bioinformatics pipelines.
10.1038/s41587-020-0439-x · 2020 · External reference
Gfastats: Conversion, evaluation and manipulation of genome sequences using assembly graphs.
10.1093/bioinformatics/btac460 · 2022 · External reference
On the path to reference genomes for all biodiversity: Laboratory protocols and lessons learned from processing over 2,000 species in the Sanger Tree of Life.
10.1093/gigascience/giaf119 · 2025 · External reference
Significantly improving the quality of genome assemblies through curation.
10.1093/gigascience/giaa153 · 2021 · External reference
HiGlass: Web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
Singularity: Scientific containers for mobility of compute.
10.1371/journal.pone.0177459 · 2017 · External reference
Minimap2: Pairwise alignment for nucleotide sequences.
10.1093/bioinformatics/bty191 · 2018 · External reference
Two new nuclear isolation buffers for plant DNA flow cytometry: A test with 37 species.
10.1093/aob/mcm152 · 2007 · External reference
BUSCO update: Novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.
10.1093/molbev/msab199 · 2021 · External reference
Docker: Lightweight Linux containers for consistent development and deployment.
10.5555/2600239.2600241 · 2014 · External reference
10.1007/978-1-0716-0997-2_17
10.1007/978-1-0716-0997-2_17 · 2021 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
10.1038/s41467-020-14998-3 · 2020 · External reference
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
10.1016/j.cell.2014.11.021 · 2014 · External reference
BOLD: The Barcode of Life Data System (http://www.barcodinglife.org).
10.1111/j.1471-8286.2007.01678.x · 2007 · External reference
Towards complete and error-free genome assemblies of all vertebrate species.
10.1038/s41586-021-03451-0 · 2021 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
NCBI taxonomy: A comprehensive update on curation, resources and tools.
10.1093/database/baaa062 · 2020 · External reference
A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project.
10.12688/wellcomeopenres.21143.1 · 2024 · External reference
10.1109/ipdps.2019.00041
10.1109/ipdps.2019.00041 · 2019 · External reference
The rayless plants of Senecio sylvaticus in Sweden.
2004 · External reference
Oatk: A de novo assembly tool for complex plant organelle genomes.
10.1186/s13059-025-03676-6 · 2025 · External reference
YaHS: Yet another Hi-C scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
