Research graph
References from The genome sequence of a ground beetle, Amara ovata Motschulsky, 1844 (Coleoptera: Carabidae). Local targets link to admitted publications; unresolved targets remain external evidence.
Basic Local Alignment Search Tool.
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
UniProt: The Universal Protein Knowledgebase in 2023.
10.1093/nar/gkac1052 · 2023 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND.
10.1038/s41592-021-01101-x · 2021 · External reference
BlobToolKit – interactive quality assessment of genome assemblies.
10.1534/g3.119.400908 · 2020 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with Hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Haplotype-resolved assembly of diploid genomes without parental data.
10.1038/s41587-022-01261-x · 2022 · External reference
A sampling strategy for genome sequencing the British terrestrial Arthropod fauna.
10.12688/wellcomeopenres.18925.1 · 2023 · External reference
Twelve years of SAMtools and BCFtools.
10.1093/gigascience/giab008 · 2021 · External reference
Sequence locally, think globally: The Darwin Tree of Life Project.
10.1073/pnas.2115642118 · 2022 · External reference
MultiQC: Summarize analysis results for multiple tools and samples in a single report.
10.1093/bioinformatics/btw354 · 2016 · External reference
The nf-core framework for community-curated bioinformatics pipelines.
10.1038/s41587-020-0439-x · 2020 · External reference
Gfastats: Conversion, evaluation and manipulation of genome sequences using assembly graphs.
10.1093/bioinformatics/btac460 · 2022 · External reference
On the path to reference genomes for all biodiversity: Laboratory protocols and lessons learned from processing over 2,000 species in the Sanger Tree of Life.
10.1093/gigascience/giaf119 · 2025 · External reference
Significantly improving the quality of genome assemblies through curation.
10.1093/gigascience/giaa153 · 2021 · External reference
HiGlass: Web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
Singularity: Scientific containers for mobility of compute.
10.1371/journal.pone.0177459 · 2017 · External reference
Specimen and sample metadata standards for biodiversity genomics: A proposal from the Darwin Tree of Life project.
10.12688/wellcomeopenres.17605.1 · 2022 · External reference
Minimap2: Pairwise alignment for nucleotide sequences.
10.1093/bioinformatics/bty191 · 2018 · External reference
Amara ovata und A. similata (Coleoptera, Carabidae), zwei phytophage laufkäferarten in rapsfeldern.
1998 · External reference
BUSCO update: Novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.
10.1093/molbev/msab199 · 2021 · External reference
338 coleopteran genomes reveal exceptional rearrangement variation compared to other insect orders.
10.64898/2026.07.17.739156 · 2026 · External reference
Docker: Lightweight Linux containers for consistent development and deployment.
10.5555/2600239.2600241 · 2014 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
10.1038/s41467-020-14998-3 · 2020 · External reference
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
10.1016/j.cell.2014.11.021 · 2014 · External reference
A DNA barcode library for ground beetles of Germany: The genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae).
10.3897/zookeys.759.24129 · 2018 · External reference
Towards complete and error-free genome assemblies of all vertebrate species.
10.1038/s41586-021-03451-0 · 2021 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
NCBI taxonomy: A comprehensive update on curation, resources and tools.
10.1093/database/baaa062 · 2020 · External reference
A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project.
10.12688/wellcomeopenres.21143.1 · 2024 · External reference
MitoHiFi: A Python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
10.1186/s12859-023-05385-y · 2023 · External reference
10.1109/ipdps.2019.00041
10.1109/ipdps.2019.00041 · 2019 · External reference
YaHS: Yet another Hi-C scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
