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References from The genome sequence of the Smooth Newt, Lissotriton vulgaris (Linnaeus, 1758) (Caudata: Salamandridae). Local targets link to admitted publications; unresolved targets remain external evidence.
Basic Local Alignment Search Tool.
10.1016/s0022-2836(05)80360-2 · 1990 · External reference
Sensitive protein alignments at tree-of-life scale using DIAMOND.
10.1038/s41592-021-01101-x · 2021 · External reference
Snail plots are badges of genome assembly quality.
10.1093/g3journal/jkag074 · 2026 · External reference
BlobToolKit – interactive quality assessment of genome assemblies.
10.1534/g3.119.400908 · 2020 · External reference
Haplotype-resolved de novo assembly using phased assembly graphs with Hifiasm.
10.1038/s41592-020-01056-5 · 2021 · External reference
Gfastats: Conversion, evaluation and manipulation of genome sequences using assembly graphs.
10.1093/bioinformatics/btac460 · 2022 · External reference
Amphibian Species of the World: An online reference.
10.5531/db.vz.0001 · 2026 · External reference
Identifying and removing haplotypic duplication in primary genome assemblies.
10.1093/bioinformatics/btaa025 · 2020 · External reference
On the path to reference genomes for all biodiversity: Laboratory protocols and lessons learned from processing over 2,000 species in the Sanger Tree of Life.
10.1093/gigascience/giaf119 · 2025 · External reference
Significantly improving the quality of genome assemblies through curation.
10.1093/gigascience/giaa153 · 2021 · External reference
HiGlass: Web-based visual exploration and analysis of genome interaction maps.
10.1186/s13059-018-1486-1 · 2018 · External reference
Singularity: Scientific containers for mobility of compute.
10.1371/journal.pone.0177459 · 2017 · External reference
Correlations of geographic distribution and temperature of embryonic development with the nuclear DNA content in the Salamandridae (Urodela, Amphibia).
10.1139/g07-010 · 2007 · External reference
10.1007/978-1-4757-6781-0_14
10.1007/978-1-4757-6781-0_14 · 1977 · External reference
BUSCO update: Novel and streamlined workflows along with broader and deeper phylogenetic coverage for scoring of eukaryotic, prokaryotic, and viral genomes.
10.1093/molbev/msab199 · 2021 · External reference
Phylogenomics yields new systematic and taxonomical insights for Lissotriton newts, a genus with a strong legacy of introgressive hybridization.
10.1016/j.ympev.2024.108282 · 2025 · External reference
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.
10.1038/s41467-020-14998-3 · 2020 · External reference
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
10.1016/j.cell.2014.11.021 · 2014 · External reference
Towards complete and error-free genome assemblies of all vertebrate species.
10.1038/s41586-021-03451-0 · 2021 · External reference
Merqury: Reference-free quality, completeness, and phasing assessment for genome assemblies.
10.1186/s13059-020-02134-9 · 2020 · External reference
A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project.
10.12688/wellcomeopenres.21143.1 · 2024 · External reference
MitoHiFi: A Python pipeline for mitochondrial genome assembly from PacBio high fidelity reads.
10.1186/s12859-023-05385-y · 2023 · External reference
10.1109/ipdps.2019.00041
10.1109/ipdps.2019.00041 · 2019 · External reference
The distributions of the six species constituting the smooth newt species complex (Lissotriton vulgaris sensu lato and L. montandoni)–an addition to the New Atlas of Amphibians and Reptiles of Europe.
10.1163/15685381-17000128 · 2018 · External reference
YaHS: Yet another Hi-C scaffolding tool.
10.1093/bioinformatics/btac808 · 2023 · External reference
