Research graph
References from A framework to determine active neurons and networks within the mouse brain reveals how brain activity changes over the course of the day. Local targets link to admitted publications; unresolved targets remain external evidence.
A mesoscale connectome of the mouse brain
10.1038/nature13186 · 2014 · External reference
High-resolution data-driven model of the mouse connectome
10.1162/netn_a_00066 · 2018 · External reference
Hierarchical organization of cortical and thalamic connectivity
10.1038/s41586-019-1716-z · 2019 · External reference
Functional connectomics spanning multiple areas of mouse visual cortex
10.1038/s41586-025-08790-w · 2025 · External reference
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
10.1038/s41586-023-06812-z · 2023 · External reference
Molecularly defined and spatially resolved cell atlas of the whole mouse brain
10.1038/s41586-023-06808-9 · 2023 · External reference
Sleep and circadian rhythmicity as entangled processes serving homeostasis
10.1038/s41583-023-00764-z · 2024 · External reference
Neuro-orchestration of sleep and wakefulness
10.1038/s41593-022-01236-w · 2023 · External reference
Neural networks of the mouse neocortex
10.1016/j.cell.2014.02.023 · 2014 · External reference
Functional connectivity hubs of the mouse brain
10.1016/j.neuroimage.2015.04.033 · 2015 · External reference
Large-scale brain networks and psychopathology: A unifying triple network model
10.1016/j.tics.2011.08.003 · 2011 · External reference
Rat brains also have a default mode network
10.1073/pnas.1200506109 · 2012 · External reference
A triple-network organization for the mouse brain
10.1038/s41380-021-01298-5 · 2022 · External reference
Regional, layer, and cell-type-specific connectivity of the mouse default mode network
10.1016/j.neuron.2020.11.011 · 2021 · External reference
Network dynamics mediate circadian clock plasticity
10.1016/j.neuron.2016.12.022 · 2017 · External reference
Time of day is associated with paradoxical reductions in global signal fluctuation and functional connectivity
10.1371/journal.pbio.3000602 · 2020 · External reference
Time-of-day influences resting-state functional cortical connectivity
10.3389/fnins.2023.1192674 · 2023 · External reference
Classifying fMRI-derived resting-state connectivity patterns according to their daily rhythmicity
10.1016/j.neuroimage.2012.08.010 · 2013 · External reference
The regulation and function of c-fos and other immediate early genes in the nervous system
10.1016/0896-6273(90)90106-p · 1990 · External reference
Catching the engram: Strategies to examine the memory trace
10.1186/1756-6606-5-32 · 2012 · External reference
Exploring memory representations with activity-based genetics
10.1101/cshperspect.a021832 · 2015 · External reference
Neuronal ensembles sufficient for recovery sleep and the sedative actions of α2 adrenergic agonists
10.1038/nn.3957 · 2015 · External reference
Temporal evolution of cortical ensembles promoting remote memory retrieval
10.1038/s41593-018-0318-7 · 2019 · External reference
Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues
10.1038/s41467-020-15906-5 · 2020 · External reference
The Allen mouse brain common coordinate framework: A 3D reference atlas
10.1016/j.cell.2020.04.007 · 2020 · External reference
Complex brain networks: Graph theoretical analysis of structural and functional systems
10.1038/nrn2575 · 2009 · External reference
Complex network measures of brain connectivity: Uses and interpretations
10.1016/j.neuroimage.2009.10.003 · 2010 · External reference
The mesoSPIM initiative: Open-source light-sheet microscopes for imaging cleared tissue
10.1038/s41592-019-0554-0 · 2019 · External reference
A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing
10.1038/s41593-018-0109-1 · 2018 · External reference
Spatial modulation of dark versus bright stimulus responses in the mouse visual system
10.1016/j.cub.2021.06.094 · 2021 · External reference
The mouse posterior parietal cortex: Anatomy and functions
10.1016/j.neures.2018.10.008 · 2019 · External reference
Three types of cortical layer 5 neurons that differ in brain-wide connectivity and function
10.1016/j.neuron.2015.11.002 · 2015 · External reference
A role for the cortex in sleep-wake regulation
10.1038/s41593-021-00894-6 · 2021 · External reference
RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells
2015 · External reference
The thalamic reticular nucleus: Structure, function and concept
10.1016/j.brainresrev.2004.04.008 · 2004 · External reference
Ventral tegmental area: Cellular heterogeneity, connectivity and behaviour
10.1038/nrn.2016.165 · 2017 · External reference
Network structure of the mouse brain connectome with voxel resolution
10.1126/sciadv.abb7187 · 2020 · External reference
A transcriptional signature of hub connectivity in the mouse connectome
10.1073/pnas.1513302113 · 2016 · External reference
Wiring cost and topological participation of the mouse brain connectome
10.1073/pnas.1420315112 · 2015 · External reference
Modularity and community structure in networks
10.1073/pnas.0601602103 · 2006 · External reference
The development of brain network hubs
10.1016/j.dcn.2018.12.005 · 2019 · External reference
Brain network communication: Concepts, models and applications
10.1038/s41583-023-00718-5 · 2023 · External reference
The role of the posterior hypothalamus in the modulation and production of rhythmic theta oscillations
10.1016/j.neuroscience.2021.07.001 · 2021 · External reference
Motor functions of the superior colliculus
10.1146/annurev-neuro-061010-113728 · 2011 · External reference
Immediate early gene c-fos in the brain: Focus on glial cells
10.3390/brainsci12060687 · 2022 · External reference
Permanent genetic access to transiently active neurons via TRAP: Targeted recombination in active populations
10.1016/j.neuron.2013.03.025 · 2013 · External reference
Molecular tools to capture active neural circuits
10.3389/fncir.2024.1449459 · 2024 · External reference
Cellular scaling rules for rodent brains
10.1073/pnas.0604911103 · 2006 · External reference
IntelliCage as a tool for measuring mouse behavior – 20 years perspective
10.1016/j.bbr.2020.112620 · 2020 · External reference
Cortical layer-specific critical dynamics triggering perception
10.1126/science.aaw5202 · 2019 · External reference
Layer-specific network oscillation and spatiotemporal receptive field in the visual cortex
10.1073/pnas.0903962106 · 2009 · External reference
Layer-specific physiological features and interlaminar interactions in the primary visual cortex of the mouse
10.1016/j.neuron.2018.12.009 · 2019 · External reference
What do we know about laminar connectivity?
10.1016/j.neuroimage.2017.07.032 · 2019 · External reference
Daily light-induced transcription in visual cortex neurons drives downward firing rate homeostasis and stabilizes sensory processing
10.1016/j.celrep.2024.114701 · 2024 · External reference
Circadian time- and sleep-dependent modulation of cortical parvalbumin-positive inhibitory neurons
2023 · External reference
Daily oscillation of the excitation-inhibition balance in visual cortical circuits
2020 · External reference
Realization of cellomics to dive into the whole-body or whole-organ cell cloud
10.1038/s41592-024-02307-5 · 2024 · External reference
Modeling the cell-type-specific mesoscale murine connectome with anterograde tracing experiments
10.1162/netn_a_00337 · 2023 · External reference
Resting-state functional connectivity emerges from structurally and dynamically shaped slow linear fluctuations
10.1523/jneurosci.1091-13.2013 · 2013 · External reference
Hierarchical organization unveiled by functional connectivity in complex brain networks
10.1103/physrevlett.97.238103 · 2006 · External reference
The spike-timing dependence of plasticity
10.1016/j.neuron.2012.08.001 · 2012 · External reference
Integrating multimodal data to understand cortical circuit architecture and function
10.1038/s41593-025-01904-7 · 2025 · External reference
Optogenetics
10.1038/nmeth.f.324 · 2011 · External reference
The mesoSPIM initiative: Open-source light-sheet microscopes for imaging cleared tissue
10.1038/s41592-019-0554-0 · 2019 · External reference
BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples
10.1038/s41592-019-0501-0 · 2019 · External reference
CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping
10.1016/j.crmeth.2021.100038 · 2021 · External reference
ilastik: Interactive machine learning for (bio)image analysis
10.1038/s41592-019-0582-9 · 2019 · External reference
Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis
10.1016/j.cell.2014.03.042 · 2014 · External reference
Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain
10.1016/j.media.2007.06.004 · 2008 · External reference
PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
10.21105/joss.01450 · 2019 · External reference
