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References from A colorful legacy of hybridization in wood-warblers includes frequent sharing of carotenoid genes among species and genera. Local targets link to admitted publications; unresolved targets remain external evidence.
Adaptive evolution and explosive speciation: the cichlid fish model
10.1038/nrg1316 · 2004 · External reference
Natural selection for Miillerian mimicry in Heliconius erato in Costa Rica
10.1126/science.176.4037.936 · 1972 · External reference
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
10.1038/s41467-018-05479-9 · 2018 · External reference
Genomic architecture and introgression shape a butterfly radiation
10.1126/science.aaw2090 · 2019 · External reference
Rampant genome-wide admixture across the Heliconius radiation
10.1093/gbe/evab099 · 2021 · External reference
Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids
10.1126/science.ade2833 · 2023 · External reference
Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares
10.1126/science.aar5273 · 2018 · External reference
Extremely divergent haplotypes in two toxin gene complexes encode alternative venom types within rattlesnake species
10.1016/j.cub.2018.02.031 · 2018 · External reference
Earth history and the passerine superradiation
10.1073/pnas.1813206116 · 2019 · External reference
Unresolved reference
2013 · External reference
The relationships and evolution of the Dendroica coronata complex
10.2307/4083405 · 1969 · External reference
Historical aspects of hybridization between blue-winged and golden-winged warblers
1980 · External reference
Three hybrid zones between hermit and Townsend’s warblers in Washington and Oregon
10.2307/4089188 · 1998 · External reference
Extensive hybridization in a contact zone between MacGillivray’s warblers Oporornis tolmiei and mourning warblers O. Philadelphia detected using molecular and morphological analyses
10.1111/j.1600-048x.2009.04687.x · 2009 · External reference
Extensive hybridization between two Andean warbler species with shallow divergence in mtDNA
2021 · External reference
Intergeneric hybrids in the family Pipridae
10.2307/1365294 · 1961 · External reference
Still another parulid intergeneric hybrid (Mniotilta × Dendroica) and its taxonomic and evolutionary implications
1978 · External reference
A wood-warbler produced through both interspecific and intergeneric hybridization
10.1098/rsbl.2018.0557 · 2018 · External reference
Genomic identification of intergeneric hybrids in New World wood-warblers (Aves: Parulidae)
10.1093/biolinnean/blaa085 · 2020 · External reference
A mitochondrial enzyme degrades carotenoids and protects against oxidative stress
10.1096/fj.10-173906 · 2011 · External reference
Substrate specificity of purified recombinant chicken β-carotene 9’,10’-oxygenase (BCO2)
10.1074/jbc.m116.723684 · 2016 · External reference
Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken
10.1371/journal.pgen.1000010 · 2008 · External reference
Plumage genes and little else distinguish the genomes of hybridizing warblers
10.1016/j.cub.2016.06.034 · 2016 · External reference
Carotenoid pigmentation in salmon: variation in expression at BCO2-l locus controls a key fitness trait affecting red coloration
2019 · External reference
A genetic mechanism for sexual dichromatism in birds
10.1126/science.aba0803 · 2020 · External reference
Genetic basis and evolutionary forces of sexually dimorphic color variation in a toad-headed agamid lizard
2024 · External reference
Pigmentation genes show evidence of repeated divergence and multiple bouts of introgression in setophaga warblers
10.1016/j.cub.2020.10.094 · 2021 · External reference
A mechanism for red coloration in vertebrates
10.1016/j.cub.2022.08.013 · 2022 · External reference
Substrates, intermediates, and products of avian ketocarotenoid metabolism
10.1016/j.bbalip.2025.159654 · 2025 · External reference
Genetic basis for red coloration in birds
10.1016/j.cub.2016.03.076 · 2016 · External reference
Spread of yellow-bill-color alleles favored by selection in the long-tailed finch hybrid system
10.1016/j.cub.2024.10.019 · 2024 · External reference
Unresolved reference
External reference
Unresolved reference
1991 · External reference
A phylogenomic tree of wood-warblers (Aves: Parulidae): dealing with good, bad, and ugly samples
10.1016/j.ympev.2024.108235 · 2025 · External reference
Evaluating the use of ABBA-BABA statistics to locate introgressed loci
10.1093/molbev/msu269 · 2015 · External reference
Evaluation of Vermivora × Oporornis hybrid wood-warblers
1988 · External reference
New insights into New World biogeography: an integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies
10.1642/auk-14-110.1 · 2015 · External reference
A new time tree of birds reveals the interplay between dispersal, geographic range size, and diversification
10.1016/j.cub.2025.07.004 · 2025 · External reference
Genetic confirmation of a hybrid between two highly divergent cardinalid species: a rose-breasted grosbeak (Pheucticus ludovicianus) and a scarlet tanager (Piranga olivacea)
2022 · External reference
Contemporary intergeneric hybridization and backcrossing among birds-of-paradise
10.1093/evlett/qrae023 · 2024 · External reference
A novel AAT-deletion mutation in the coding sequence of the BCO2 gene in yellow-fat rabbits
10.1007/s13353-015-0290-9 · 2015 · External reference
Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard
10.1073/pnas.1820320116 · 2019 · External reference
A multispecies BCO2 beak color polymorphism in the Darwin’s finch radiation
10.1016/j.cub.2021.09.085 · 2021 · External reference
Sequential introgression of a carotenoid processing gene underlies sexual ornament diversity in a genus of manakins
2024 · External reference
Phylogenetic affinities and inter‐island differentiation in the Vitelline Warbler Dendroica vitellina, a West Indian endemic
10.1111/j.1474-919x.2005.00464.x · 2005 · External reference
Recombination and selection against introgressed DNA
10.1093/evolut/qpad021 · 2023 · External reference
Preformative molt extent of Cardellina warblers increases with breeding latitude and migration distance
10.1676/22-00048 · 2023 · External reference
Feather carotenoids of the American Redstart (Setophaga ruticilla) across age and sex classes and the reliability of standard color metrics to capture pigment variation
10.1016/j.cbpb.2024.111027 · 2025 · External reference
Slate-throated Redstart (Myioborus miniatus), version 2.0.
10.2173/bow.sltred.02 · 2022 · External reference
Ancient admixture in human history
10.1534/genetics.112.145037 · 2012 · External reference
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
10.1038/nature11041 · 2012 · External reference
Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice
10.1016/j.cub.2011.06.043 · 2011 · External reference
Evolutionary implications of divergent clines in an avian (Manacus: Aves) hybrid zone
10.1111/j.0014-3820.2001.tb01322.x · 2001 · External reference
Experimental evidence that extra-pair mating drives asymmetrical introgression of a sexual trait
2013 · External reference
Sexual selection drives asymmetric introgression in wall lizards
10.1111/ele.12531 · 2015 · External reference
CYP2J19 mediates carotenoid colour introgression across a natural avian hybrid zone
10.1111/mec.15691 · 2020 · External reference
Perceptual biases and mate choice
10.1146/annurev-ecolsys-110512-135901 · 2013 · External reference
Plumage coloration is a sexually selected indicator of male quality
10.1038/350337a0 · 1991 · External reference
Selective sweeps on different pigmentation genes mediate convergent evolution of island melanism in two incipient bird species
10.1371/journal.pgen.1010474 · 2022 · External reference
Concerted variation in melanogenesis genes underlies emergent patterning of plumage in capuchino seedeaters
2022 · External reference
Interspecific hybrid ancestry of a plant adaptive radiation: allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications
10.1093/oxfordjournals.molbev.a026200 · 1999 · External reference
Reassessing niche partitioning in MacArthur’s warblers: foraging behaviour, morphology and diet differentiation in a phylogenetic context
10.1098/rsbl.2025.0001 · 2025 · External reference
Hybridization in birds-of-paradise: widespread ancestral gene flow despite strong sexual selection in a lek-mating system
10.1016/j.isci.2024.110300 · 2024 · External reference
Genomes of the extinct Bachman’s warbler show high divergence and no evidence of admixture with other extant Vermivora warblers
10.1016/j.cub.2023.05.058 · 2023 · External reference
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
10.1186/s13104-016-1900-2 · 2016 · External reference
Fast gapped-read alignment with Bowtie 2
10.1038/nmeth.1923 · 2012 · External reference
One is not enough: on the effects of reference genome for the mapping and subsequent analyses of short-reads
10.1371/journal.pcbi.1008678 · 2021 · External reference
Origin matters: using a local reference genome improves measures in population genomics
10.1111/1755-0998.13838 · 2023 · External reference
Twelve years of SAMtools and BCFtools
10.1093/gigascience/giab008 · 2021 · External reference
The colorful legacy of hybridization in parulid warblers
2025 · External reference
Tetrapods: 5,472 baits targeting 5,060 conserved loci
2018 · External reference
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
10.1093/molbev/mst010 · 2013 · External reference
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
10.1093/oxfordjournals.molbev.a026334 · 2000 · External reference
PHYLUCE is a software package for the analysis of conserved genomic loci
10.1093/bioinformatics/btv646 · 2016 · External reference
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
10.1093/molbev/msaa015 · 2020 · External reference
Improved robustness to gene tree incompleteness, estimation errors, and systematic homology errors with weighted TREE-QMC
2025 · External reference
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
10.1093/bioinformatics/bty633 · 2019 · External reference
Unresolved reference
2024 · External reference
Liftoff: accurate mapping of gene annotations
10.1093/bioinformatics/btaa1016 · 2021 · External reference
A draft sequence of the Neandertal genome
10.1126/science.1188021 · 2010 · External reference
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
10.1093/bib/bbs017 · 2013 · External reference
Dsuite - Fast D-statistics and related admixture evidence from VCF files
10.1111/1755-0998.13265 · 2021 · External reference